mRNA_M-pyrifera_M_contig81804.19145.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81804.19145.1
Unique NamemRNA_M-pyrifera_M_contig81804.19145.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81804.19145.1 vs. uniprot
Match: A0A6B2KW35_9EUKA (Sister chromatid cohesion protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KW35_9EUKA)

HSP 1 Score: 154 bits (390), Expect = 1.930e-38
Identity = 105/299 (35.12%), Postives = 153/299 (51.17%), Query Frame = 1
Query:   16 TSVALPLLVCESTEALQLRAIAVLCSVFGRYDAHRGMIFQDLFHSLDKLPTGKRGLRKYRVETEGKVVFIQVISAAVLLMLQ-SCG----RSSDGTSWALNGYEAASASAKVLLTLFIQKFTTKATAW-----QVEYRAILENLTQDFLLVAHLPHWPMAEVLLSVLSGMYLSALAQQGKQAKALEGLRKIATQQLGAVATKLRQEASHAKECRLFSL--APKDDSEEQTQGS----CSCGQVLVN---RFMLSCERCGTWFHGECMGVDPNNVPSEWHCRPCRTILRALESVGEMSED 855
            T++ LP    E   + QL A+ V+ ++F RY  HRGMI  DLF+ L KLPT KR LR Y++  + K   IQ++SA ++  +Q S G    + SD  S  +N Y  A   A   +  F++   +  TA      + EYR IL NL +D L   +LP WP +E+LLSVL    +  + ++       E LR ++ Q LG +A++++Q+    KE  LF    A K + +    G     C C Q +       M+ C+RC  WFH EC+ VD  N P  W+C PC  ILR +    +   D
Sbjct:  183 TAITLPTFFVEGIYSTQLSALNVIRAIFSRYPKHRGMILDDLFNDLIKLPTSKRDLRNYQLVDQKKS--IQMVSALLMHCIQCSAGIPKEKDSDNESEGVNSYTVAIMCANNFIQSFMKNCISTNTAQSNKEKEAEYRTILSNLVEDLLTTLNLPEWPSSELLLSVLGRNLVQNVVKKDTN----EALRMLSIQLLGTIASRVQQDVILCKESTLFVFPKARKLNEDGSVVGGEIDECICKQTIEGISTASMIDCDRCRRWFHCECVAVDQVNPPKTWYCDPC-LILRQINQHKKQLHD 474          
BLAST of mRNA_M-pyrifera_M_contig81804.19145.1 vs. uniprot
Match: UPI001C41EEB2 (nipped-B-like protein B isoform X1 n=4 Tax=Solea senegalensis TaxID=28829 RepID=UPI001C41EEB2)

HSP 1 Score: 116 bits (290), Expect = 3.620e-25
Identity = 76/227 (33.48%), Postives = 124/227 (54.63%), Query Frame = 1
Query:   46 ESTEALQLRAIAVLCSVFGRYDAHRGMIFQDLFHSLDKLPTGKRGLRKYRVETEGKVVFIQVISAAVLLMLQSCGR-------------SSDGTSWALNGYEAASASAKVLLTLFIQKFTTKATAWQVEYRAILENLTQDFLLVAHLPHWPMAEVLLSVLSGMYLSALAQQGKQAKALEGLRKIATQQLGAVATKLRQEASHAKEC-----RLFSLAPKDDSEEQTQ 672
            E+   LQL AI ++ +VF RY+ HR +I +++F SL +LPTGKR LR +R+ ++G+ V+IQ+++A VL ++Q   R               D   +  N YE A  +A+  L++F++K  +K    + +YR + EN   D L   + P WP AE+LLS+L  +    L  Q    +    LR  +   LG VA++LR++A ++K       R+   +P +D  +Q Q
Sbjct: 1380 ENVSELQLCAITLVTAVFSRYEKHRQLILEEIFTSLARLPTGKRSLRNFRINSDGENVYIQMVTALVLQLIQCVVRLPYEREEADESKKKVDKDVFITNSYETAMRTAQNFLSVFLKKCGSKQG--EEDYRPLFENFVHDLLSAVNRPEWPAAELLLSLLGRL----LVHQFSNKQTEMALRVASLDYLGTVASRLRKDAVNSKMDQKAIDRILRESPGNDEIQQLQ 1600          
BLAST of mRNA_M-pyrifera_M_contig81804.19145.1 vs. uniprot
Match: A0A267DR52_9PLAT (Nipped-B protein n=6 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DR52_9PLAT)

HSP 1 Score: 112 bits (279), Expect = 9.770e-24
Identity = 72/198 (36.36%), Postives = 112/198 (56.57%), Query Frame = 1
Query:   46 ESTEALQLRAIAVLCSVFGRYDAHRGMIFQDLFHSLDKLPTGKRGLRKYRVETEGKVVFIQVISAAVLLMLQSC---------GRSSDGTSWA--LNGYEAASASAKVLLTLFIQKFTTKATAWQVEYRAILENLTQDFLLVAHLPHWPMAEVLLSVLSGMYLSALAQQGKQAKALEGLRKIATQQLGAVATKLRQEA 606
            E+ E LQL A+ +  SVF +Y+ HR +I +DLF SL +LP+ KR LR +R+ +E     IQ+++A  LL++QS           +  D T+    L+ YE+A  +A+V L +F+ K   KA   + +YR I E   +D LL  + P WP AE+ LS+L G+ +   A +       + LR  +   LG VA++LR++A
Sbjct:  672 ENVENLQLSALRLCTSVFCQYEKHRQLILEDLFASLARLPSSKRSLRSFRLNSEES---IQMLTALSLLLVQSVVLLPAKVPSSKDQDNTAAMALLDAYESAKKTAQVFLVVFLNKCAKKAE--EQDYRGIFEKFVEDLLLAVNKPEWPAAEMFLSLLGGLLVKQFADRSVD----QALRVASLDYLGTVASRLRKDA 860          
BLAST of mRNA_M-pyrifera_M_contig81804.19145.1 vs. uniprot
Match: A0A822HM29_9NEOB (Nipped-B protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822HM29_9NEOB)

HSP 1 Score: 111 bits (277), Expect = 1.710e-23
Identity = 74/229 (32.31%), Postives = 122/229 (53.28%), Query Frame = 1
Query:   46 ESTEALQLRAIAVLCSVFGRYDAHRGMIFQDLFHSLDKLPTGKRGLRKYRVET---EGKVVFIQVISAAVLLMLQ--------------SCGRSSDGTSWALNGYEAASASAKVLLTLFIQKFTTKATAWQVEYRAILENLTQDFLLVAHLPHWPMAEVLLSVLSGMYLSALAQQGKQAKALEGLRKIATQQLGAVATKLRQEASHAKEC-----RLFSLAPKDDSEEQ 666
            E+   LQL AI ++ +VF RY+ HR +I ++LF SL +LPT KR LR +R+ +   +G+ ++IQ+++A VL ++Q                 +  D   +  N YE A  +A+  L++F++K  +K    + +YR + EN  QD L   + P WP AE+LLS+L  + +   + +  +      LR  +   LG VA +LR++A  +K       R+   APK + E Q
Sbjct:  232 ENVSELQLCAIKLVTAVFSRYEKHRQLILEELFTSLARLPTSKRSLRNFRLNSSDDDGEAMYIQMVTALVLQLIQCVVHLPSDREHAEEESNKKIDQDVFITNSYETAMRTAQNFLSIFLKKCGSKQG--EEDYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEM----ALRVASLDYLGTVAARLRKDAVSSKMDQGSIDRILKQAPKGEDEIQ 454          
BLAST of mRNA_M-pyrifera_M_contig81804.19145.1 vs. uniprot
Match: A0A7K9E5S5_BARMA (NIPBL protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7K9E5S5_BARMA)

HSP 1 Score: 106 bits (264), Expect = 2.400e-23
Identity = 68/210 (32.38%), Postives = 114/210 (54.29%), Query Frame = 1
Query:   46 ESTEALQLRAIAVLCSVFGRYDAHRGMIFQDLFHSLDKLPTGKRGLRKYRV---ETEGKVVFIQVISAAVLLMLQ----------------SCGRSSDGTSWALNGYEAASASAKVLLTLFIQKFTTKATAWQVEYRAILENLTQDFLLVAHLPHWPMAEVLLSVLSGMYLSALAQQGKQAKALEGLRKIATQQLGAVATKLRQEASHAK 618
            E+   LQL AI ++ +VF RY+ HR +I +++F SL +LPT KR LR +R+   +T+G+ ++IQ+++A VL ++Q                   +  D      N YE A  +A+  L++F++K  +K    + +YR + EN  QD L   + P WP AE+LLS+L  + +   + +  +      LR  +   LG VA +LR++A  +K
Sbjct:   12 ENVSELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDTDGEPMYIQMVTALVLQLIQCVVHLPSAEKDSNSEEELNKKVDQDVLITNSYETAMRTAQNFLSIFLKKCGSKQG--EEDYRPLFENFIQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEM----ALRVASLDYLGTVAARLRKDAVTSK 215          
BLAST of mRNA_M-pyrifera_M_contig81804.19145.1 vs. uniprot
Match: A0A8C5P6K7_9ANUR (Nipped-B protein n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5P6K7_9ANUR)

HSP 1 Score: 110 bits (276), Expect = 2.520e-23
Identity = 74/229 (32.31%), Postives = 122/229 (53.28%), Query Frame = 1
Query:   46 ESTEALQLRAIAVLCSVFGRYDAHRGMIFQDLFHSLDKLPTGKRGLRKYRVET---EGKVVFIQVISAAVLLMLQ--------------SCGRSSDGTSWALNGYEAASASAKVLLTLFIQKFTTKATAWQVEYRAILENLTQDFLLVAHLPHWPMAEVLLSVLSGMYLSALAQQGKQAKALEGLRKIATQQLGAVATKLRQEASHAKEC-----RLFSLAPKDDSEEQ 666
            E+   LQL AI ++ +VF RY+ HR +I ++LF SL +LPT KR LR +R+ +   +G+ ++IQ+++A VL ++Q                 +  D   +  N YE A  +A+  L++F++K  +K    + +YR + EN  QD L   + P WP AE+LLS+L  + +   + +  +      LR  +   LG VA +LR++A  +K       R+   APK + E Q
Sbjct: 1577 ENVSELQLCAIKLVTAVFSRYEKHRQLILEELFTSLARLPTSKRSLRNFRLNSSDDDGEAMYIQMVTALVLQLIQCVVHLPSDREHAEEESNKKVDQDVFITNSYETAMRTAQNFLSIFLKKCGSKQG--EEDYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEM----ALRVASLDYLGTVAARLRKDAVTSKMDQGSIDRILKQAPKGEDEIQ 1799          
BLAST of mRNA_M-pyrifera_M_contig81804.19145.1 vs. uniprot
Match: A0A7K5MAR7_CARCD (NIPBL protein (Fragment) n=3 Tax=Passeriformes TaxID=9126 RepID=A0A7K5MAR7_CARCD)

HSP 1 Score: 106 bits (264), Expect = 2.870e-23
Identity = 68/210 (32.38%), Postives = 114/210 (54.29%), Query Frame = 1
Query:   46 ESTEALQLRAIAVLCSVFGRYDAHRGMIFQDLFHSLDKLPTGKRGLRKYRV---ETEGKVVFIQVISAAVLLMLQ----------------SCGRSSDGTSWALNGYEAASASAKVLLTLFIQKFTTKATAWQVEYRAILENLTQDFLLVAHLPHWPMAEVLLSVLSGMYLSALAQQGKQAKALEGLRKIATQQLGAVATKLRQEASHAK 618
            E+   LQL AI ++ +VF RY+ HR +I +++F SL +LPT KR LR +R+   +T+G+ ++IQ+++A VL ++Q                   +  D      N YE A  +A+  L++F++K  +K    + +YR + EN  QD L   + P WP AE+LLS+L  + +   + +  +      LR  +   LG VA +LR++A  +K
Sbjct:   63 ENVSELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDTDGEPMYIQMVTALVLQLIQCVVHLPSAEKDSNSEEESNKKVDQDVLMTNSYETAMRTAQNFLSIFLKKCGSKQG--EEDYRPLFENFIQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEM----ALRVASLDYLGTVAARLRKDAVTSK 266          
BLAST of mRNA_M-pyrifera_M_contig81804.19145.1 vs. uniprot
Match: A0A8J6FJD8_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6FJD8_ELECQ)

HSP 1 Score: 110 bits (275), Expect = 3.270e-23
Identity = 74/229 (32.31%), Postives = 122/229 (53.28%), Query Frame = 1
Query:   46 ESTEALQLRAIAVLCSVFGRYDAHRGMIFQDLFHSLDKLPTGKRGLRKYRVET---EGKVVFIQVISAAVLLMLQ--------------SCGRSSDGTSWALNGYEAASASAKVLLTLFIQKFTTKATAWQVEYRAILENLTQDFLLVAHLPHWPMAEVLLSVLSGMYLSALAQQGKQAKALEGLRKIATQQLGAVATKLRQEASHAKEC-----RLFSLAPKDDSEEQ 666
            ES   LQL AI ++ +VF RY+ HR +I ++LF SL +LPT KR LR +R+ +   +G+ ++IQ+++A VL ++Q                 +  D   +  N YE A  +A+  L++F++K  +K    + +YR + EN  QD L   + P WP AE+LLS+L  + +   + +  +      LR  +   LG VA +LR++A  +K       R+   AP+ + E Q
Sbjct: 1430 ESVSELQLCAIKLVTAVFSRYEKHRQLILEELFTSLARLPTSKRSLRNFRLNSSDDDGEAMYIQMVTALVLQLIQCVVHLPFDKENIEEESNKKIDQDVFITNSYETAMRTAQNFLSIFLKKCGSKQG--EEDYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEM----ALRVASLDYLGTVAARLRKDAVTSKMDQGSIDRILKQAPEGEDEIQ 1652          
BLAST of mRNA_M-pyrifera_M_contig81804.19145.1 vs. uniprot
Match: UPI0008545AAE (nipped-B-like protein isoform X1 n=5 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008545AAE)

HSP 1 Score: 110 bits (275), Expect = 3.400e-23
Identity = 69/208 (33.17%), Postives = 114/208 (54.81%), Query Frame = 1
Query:   46 ESTEALQLRAIAVLCSVFGRYDAHRGMIFQDLFHSLDKLPTGKRGLRKYRVET---EGKVVFIQVISAAVLLMLQ--------------SCGRSSDGTSWALNGYEAASASAKVLLTLFIQKFTTKATAWQVEYRAILENLTQDFLLVAHLPHWPMAEVLLSVLSGMYLSALAQQGKQAKALEGLRKIATQQLGAVATKLRQEASHAK 618
            E+   LQL AI  + +VF RY+ HR +I ++LF SL +LPT KR LR +R+ +   +G+ ++IQ+++A VL ++Q               C +  D   +  N YE A  +A+  L++F++K  +K    + +YR + EN  QD L   + P WP AE+LLS+L  + +   + +  +      LR  +   LG VA +LR++A  +K
Sbjct: 1518 ENVSELQLCAIKQVTAVFSRYEKHRQLILEELFTSLARLPTSKRSLRNFRLNSSDDDGEAMYIQMVTALVLQLIQCVVHLPSDRDHAEEECNKKVDQDVFITNSYETAMRTAQNFLSIFLKKCGSKQG--EEDYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEM----ALRVASLDYLGTVAARLRKDAVTSK 1719          
BLAST of mRNA_M-pyrifera_M_contig81804.19145.1 vs. uniprot
Match: A0A1A8NRQ9_9TELE (Nipped-B protein (Fragment) n=3 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8NRQ9_9TELE)

HSP 1 Score: 109 bits (273), Expect = 5.740e-23
Identity = 76/230 (33.04%), Postives = 120/230 (52.17%), Query Frame = 1
Query:   46 ESTEALQLRAIAVLCSVFGRYDAHRGMIFQDLFHSLDKLPTGKRGLRKYR---VETEGKVVFIQVISAAVLLMLQSC-------------GRSSDGTSWALNGYEAASASAKVLLTLFIQKFTTKATAWQVEYRAILENLTQDFLLVAHLPHWPMAEVLLSVLSGMYLSALAQQGKQAKALEGLRKIATQQLGAVATKLRQEASHAKEC-----RLFSLAPKDDSEEQTQ 672
            E+   LQL AI ++ +VF RY+ HR +I +D+F SL KLPT KR LR +R   ++++G+ ++IQ++SA VL ++Q                +  D  +   N YE A  +A+  L++F++K  +K    + +YR + EN   D L     P WP AE+LLS+L  +    L  Q    +    LR  +   LG VA++LR++A  +K       R+    P  D  +Q Q
Sbjct:   92 ENVSELQLCAITLVTAVFSRYEKHRQLILEDIFTSLAKLPTSKRNLRNFRLNSIDSDGEPLYIQMVSALVLQLIQCVVHFPSEKEAEEGQNKKLDRDALITNTYETAMRTAQNFLSVFLKKCGSKQG--EEDYRPLFENFVHDLLSAVSKPEWPAAELLLSLLGRL----LVHQFSNKQTEMALRVASLDYLGTVASRLRKDALTSKMNQRAIDRILKETPGSDEVQQLQ 315          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81804.19145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B2KW35_9EUKA1.930e-3835.12Sister chromatid cohesion protein n=1 Tax=Arcella ... [more]
UPI001C41EEB23.620e-2533.48nipped-B-like protein B isoform X1 n=4 Tax=Solea s... [more]
A0A267DR52_9PLAT9.770e-2436.36Nipped-B protein n=6 Tax=Macrostomum lignano TaxID... [more]
A0A822HM29_9NEOB1.710e-2332.31Nipped-B protein n=1 Tax=Ranitomeya imitator TaxID... [more]
A0A7K9E5S5_BARMA2.400e-2332.38NIPBL protein (Fragment) n=2 Tax=Neognathae TaxID=... [more]
A0A8C5P6K7_9ANUR2.520e-2332.31Nipped-B protein n=2 Tax=Leptobrachium leishanense... [more]
A0A7K5MAR7_CARCD2.870e-2332.38NIPBL protein (Fragment) n=3 Tax=Passeriformes Tax... [more]
A0A8J6FJD8_ELECQ3.270e-2332.31Uncharacterized protein n=1 Tax=Eleutherodactylus ... [more]
UPI0008545AAE3.400e-2333.17nipped-B-like protein isoform X1 n=5 Tax=Nanorana ... [more]
A0A1A8NRQ9_9TELE5.740e-2333.04Nipped-B protein (Fragment) n=3 Tax=Nothobranchius... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81804contigM-pyrifera_M_contig81804:1..915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue4.7e-22
Seed eggNOG ortholog35128.Thaps21122
KEGG koko:K06672
KEGG Pathwayko04111,map04111
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.HEAT repeat associated with sister chromatid cohesion
EggNOG OGs2XB0M@2836,KOG1020@1,KOG1020@2759
COG Functional cat.BDL
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size915
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.5125656-CDS-M-pyrifera_M_contig81804:0..9151622816725.5125656-CDS-M-pyrifera_M_contig81804:0..915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81804 1..915 +
1692278142.524135-CDS-M-pyrifera_M_contig81804:0..9151692278142.524135-CDS-M-pyrifera_M_contig81804:0..915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81804 1..915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81804.19145.1prot_M-pyrifera_M_contig81804.19145.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81804 1..915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81804.19145.1

>prot_M-pyrifera_M_contig81804.19145.1 ID=prot_M-pyrifera_M_contig81804.19145.1|Name=mRNA_M-pyrifera_M_contig81804.19145.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=305bp
VVCRITSVALPLLVCESTEALQLRAIAVLCSVFGRYDAHRGMIFQDLFHS
LDKLPTGKRGLRKYRVETEGKVVFIQVISAAVLLMLQSCGRSSDGTSWAL
NGYEAASASAKVLLTLFIQKFTTKATAWQVEYRAILENLTQDFLLVAHLP
HWPMAEVLLSVLSGMYLSALAQQGKQAKALEGLRKIATQQLGAVATKLRQ
EASHAKECRLFSLAPKDDSEEQTQGSCSCGQVLVNRFMLSCERCGTWFHG
ECMGVDPNNVPSEWHCRPCRTILRALESVGEMSEDEERLLAAARKVVLHF
LQSQS
back to top

mRNA from alignment at M-pyrifera_M_contig81804:1..915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81804.19145.1 ID=mRNA_M-pyrifera_M_contig81804.19145.1|Name=mRNA_M-pyrifera_M_contig81804.19145.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=915bp|location=Sequence derived from alignment at M-pyrifera_M_contig81804:1..915+ (Macrocystis pyrifera P11B4 male)
GTAGTTTGTCGCATTACCTCTGTTGCGCTTCCGCTACTCGTCTGTGAGTC TACAGAAGCGTTGCAACTCAGGGCCATTGCCGTTCTGTGCTCTGTGTTTG GCCGCTACGATGCTCACCGAGGCATGATCTTCCAAGACCTCTTTCACTCC CTTGACAAGCTGCCTACTGGAAAGAGAGGACTGAGAAAGTACCGAGTGGA GACAGAGGGCAAGGTTGTCTTCATCCAGGTCATCTCAGCAGCAGTGCTGT TGATGCTCCAGAGCTGTGGCAGGAGCAGCGACGGTACTTCCTGGGCACTG AACGGCTACGAGGCGGCGTCTGCAAGTGCCAAGGTCCTTCTTACTCTCTT CATCCAGAAGTTCACCACCAAGGCAACTGCCTGGCAGGTGGAATACCGCG CTATTCTCGAGAACCTCACACAGGACTTCCTGTTGGTTGCACACCTGCCA CACTGGCCCATGGCTGAGGTTCTACTCAGCGTTCTCAGCGGCATGTATCT CTCAGCTCTTGCCCAGCAGGGCAAGCAGGCAAAGGCTCTGGAGGGCTTGC GAAAAATTGCCACCCAGCAACTGGGAGCTGTTGCCACGAAGCTGCGACAA GAGGCAAGCCATGCCAAGGAATGCCGACTCTTCTCCCTTGCTCCCAAGGA CGACAGCGAAGAGCAGACGCAAGGCTCCTGTTCCTGTGGCCAAGTGCTGG TGAACCGCTTCATGCTCTCTTGCGAGAGATGTGGCACTTGGTTTCATGGA GAGTGTATGGGAGTGGATCCCAACAACGTTCCTTCAGAGTGGCATTGTCG GCCCTGCAGAACGATCCTCCGAGCCCTTGAGAGCGTGGGAGAGATGAGCG AAGACGAAGAACGGTTGCTCGCTGCTGCAAGGAAGGTGGTTTTGCACTTT CTCCAGAGTCAGAGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81804:1..915+

>mRNA_M-pyrifera_M_contig81804.19145.1 ID=mRNA_M-pyrifera_M_contig81804.19145.1|Name=mRNA_M-pyrifera_M_contig81804.19145.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1830bp|location=Sequence derived from alignment at M-pyrifera_M_contig81804:1..915+ (Macrocystis pyrifera P11B4 male)
GTAGTTTGTCGCATTACCTCTGTTGCGCTTCCGCTACTCGTCTGTGAGTC
TACAGAAGCGTTGCAACTCAGGGCCATTGCCGTTCTGTGCTCTGTGTTTG
GCCGCTACGATGCTCACCGAGGCATGATCTTCCAAGACCTCTTTCACTCC
CTTGACAAGCTGCCTACTGGAAAGAGAGGACTGAGAAAGTACCGAGTGGA
GACAGAGGGCAAGGTTGTCTTCATCCAGGTCATCTCAGCAGCAGTGCTGT
TGATGCTCCAGAGCTGTGGCAGGAGCAGCGACGGTACTTCCTGGGCACTG
AACGGCTACGAGGCGGCGTCTGCAAGTGCCAAGGTCCTTCTTACTCTCTT
CATCCAGAAGTTCACCACCAAGGCAACTGCCTGGCAGGTGGAATACCGCG
CTATTCTCGAGAACCTCACACAGGACTTCCTGTTGGTTGCACACCTGCCA
CACTGGCCCATGGCTGAGGTTCTACTCAGCGTTCTCAGCGGCATGTATCT
CTCAGCTCTTGCCCAGCAGGGCAAGCAGGCAAAGGCTCTGGAGGGCTTGC
GAAAAATTGCCACCCAGCAACTGGGAGCTGTTGCCACGAAGCTGCGACAA
GAGGCAAGCCATGCCAAGGAATGCCGACTCTTCTCCCTTGCTCCCAAGGA
CGACAGCGAAGAGCAGACGCAAGGCTCCTGTTCCTGTGGCCAAGTGCTGG
TGAACCGCTTCATGCTCTCTTGCGAGAGATGTGGCACTTGGTTTCATGGA
GAGTGTATGGGAGTGGATCCCAACAACGTTCCTTCAGAGTGGCATTGTCG
GCCCTGCAGAACGATCCTCCGAGCCCTTGAGAGCGTGGGAGAGATGAGCG
AAGACGAAGAACGGTTGCTCGCTGCTGCAAGGAAGGTGGTTTTGCACTTT
CTCCAGAGTCAGAGCGTAGTTTGTCGCATTACCTCTGTTGCGCTTCCGCT
ACTCGTCTGTGAGTCTACAGAAGCGTTGCAACTCAGGGCCATTGCCGTTC
TGTGCTCTGTGTTTGGCCGCTACGATGCTCACCGAGGCATGATCTTCCAA
GACCTCTTTCACTCCCTTGACAAGCTGCCTACTGGAAAGAGAGGACTGAG
AAAGTACCGAGTGGAGACAGAGGGCAAGGTTGTCTTCATCCAGGTCATCT
CAGCAGCAGTGCTGTTGATGCTCCAGAGCTGTGGCAGGAGCAGCGACGGT
ACTTCCTGGGCACTGAACGGCTACGAGGCGGCGTCTGCAAGTGCCAAGGT
CCTTCTTACTCTCTTCATCCAGAAGTTCACCACCAAGGCAACTGCCTGGC
AGGTGGAATACCGCGCTATTCTCGAGAACCTCACACAGGACTTCCTGTTG
GTTGCACACCTGCCACACTGGCCCATGGCTGAGGTTCTACTCAGCGTTCT
CAGCGGCATGTATCTCTCAGCTCTTGCCCAGCAGGGCAAGCAGGCAAAGG
CTCTGGAGGGCTTGCGAAAAATTGCCACCCAGCAACTGGGAGCTGTTGCC
ACGAAGCTGCGACAAGAGGCAAGCCATGCCAAGGAATGCCGACTCTTCTC
CCTTGCTCCCAAGGACGACAGCGAAGAGCAGACGCAAGGCTCCTGTTCCT
GTGGCCAAGTGCTGGTGAACCGCTTCATGCTCTCTTGCGAGAGATGTGGC
ACTTGGTTTCATGGAGAGTGTATGGGAGTGGATCCCAACAACGTTCCTTC
AGAGTGGCATTGTCGGCCCTGCAGAACGATCCTCCGAGCCCTTGAGAGCG
TGGGAGAGATGAGCGAAGACGAAGAACGGTTGCTCGCTGCTGCAAGGAAG
GTGGTTTTGCACTTTCTCCAGAGTCAGAGC
back to top