mRNA_M-pyrifera_M_contig81771.19142.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81771.19142.1
Unique NamemRNA_M-pyrifera_M_contig81771.19142.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81771.19142.1 vs. uniprot
Match: A0A7S3UQ97_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQ97_HETAK)

HSP 1 Score: 55.1 bits (131), Expect = 6.600e-8
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    4 MDSGYLRETVSSPLGEALAAAVAAQADDPVQFVGEYLLRFVDRKEAEQKV 153
            MD+ YL++TV +PL EAL +    Q +D V+++G YLL +V+RKE EQK+
Sbjct:    1 MDAQYLKQTVGTPLIEALTSMAVEQPNDAVEYIGNYLLSYVERKEREQKL 50          
BLAST of mRNA_M-pyrifera_M_contig81771.19142.1 vs. uniprot
Match: D8LRV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRV6_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.010e-7
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    4 MDSGYLRETVSSPLGEALAAAVAAQADDPVQFVGEYLLRFVDRKEAEQK 150
            MD+ +L+ TV  PL +AL A V AQ  DP++F+GE LL F+ R+EAE K
Sbjct:   12 MDAEFLKRTVGEPLSDALTALVVAQPADPIEFIGEALLDFIKRREAEAK 60          
BLAST of mRNA_M-pyrifera_M_contig81771.19142.1 vs. uniprot
Match: A0A329SH93_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SH93_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.860e-7
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 KMDSGYLRETVSSPLGEALAAAVAAQADDPVQFVGEYLLRFVDRKEAEQKV 153
            ++D  YLR+TV +PL EA+A     Q +DPV+F+G YLL+ V   EA+QK+
Sbjct:    6 ELDHAYLRQTVGTPLTEAMAQLAILQPEDPVEFLGNYLLKHVANVEAQQKL 56          
BLAST of mRNA_M-pyrifera_M_contig81771.19142.1 vs. uniprot
Match: A0A7S0K0L7_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K0L7_CAFRO)

HSP 1 Score: 52.0 bits (123), Expect = 8.970e-7
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   16 YLRETVSSPLGEALAAAVAAQADDPVQFVGEYLLRFVDRKEAEQK 150
            YL  TVS+ + E +AA VAAQ DDPV F+G YLL+ V+R E E K
Sbjct:   14 YLTATVSASVTEGVAATVAAQPDDPVDFLGRYLLKLVERGETEAK 58          
BLAST of mRNA_M-pyrifera_M_contig81771.19142.1 vs. uniprot
Match: A0A0W8D126_PHYNI (Flagella associated protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D126_PHYNI)

HSP 1 Score: 52.4 bits (124), Expect = 1.700e-6
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 KMDSGYLRETVSSPLGEALAAAVAAQADDPVQFVGEYLLRFVDRKEAEQKV 153
            ++D  YLR+TV +PL EA+A     Q +DPV+F+G YLL+ V   E +QK+
Sbjct:    6 ELDHAYLRQTVGAPLTEAMAQLAILQPEDPVEFLGNYLLKHVANVETQQKL 56          
BLAST of mRNA_M-pyrifera_M_contig81771.19142.1 vs. uniprot
Match: A0A5A8DUH8_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DUH8_CAFRO)

HSP 1 Score: 52.0 bits (123), Expect = 2.330e-6
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   16 YLRETVSSPLGEALAAAVAAQADDPVQFVGEYLLRFVDRKEAEQK 150
            YL  TVS+ + E +AA VAAQ DDPV F+G YLL+ V+R E E K
Sbjct:    4 YLTATVSASVTEGVAATVAAQPDDPVDFLGRYLLKLVERGETEAK 48          
BLAST of mRNA_M-pyrifera_M_contig81771.19142.1 vs. uniprot
Match: A0A8K1CNJ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNJ4_PYTOL)

HSP 1 Score: 51.2 bits (121), Expect = 4.350e-6
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 KMDSGYLRETVSSPLGEALAAAVAAQADDPVQFVGEYLLRFVDRKEAEQKV 153
            + D  YLRETV  PL EA+A     Q +DPV+F+G++LL++VD +  +Q++
Sbjct:    6 EFDHAYLRETVGVPLTEAMAQLAIVQPEDPVEFLGQFLLKYVDNELHKQEL 56          
BLAST of mRNA_M-pyrifera_M_contig81771.19142.1 vs. uniprot
Match: K3WZC9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZC9_GLOUD)

HSP 1 Score: 50.4 bits (119), Expect = 8.140e-6
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    4 MDSGYLRETVSSPLGEALAAAVAAQADDPVQFVGEYLLRFVDRKEAEQK 150
            +D  YLR TV++PL EA+A     Q +DPV+++G YLL+FV+ +   Q+
Sbjct:    8 LDHAYLRTTVAAPLAEAMAQLAILQPEDPVEYLGNYLLKFVENELENQR 56          
BLAST of mRNA_M-pyrifera_M_contig81771.19142.1 vs. uniprot
Match: A0A7S3PSB0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSB0_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 1.080e-5
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1
Query:    4 MDSGYLRETVSSPLGEALAAAVAAQADDPVQFVGEYLLRFVDRKEAEQK 150
            MD+ +L++TV  PL   LAA    Q +D + F+G YLL++V+ KEAE K
Sbjct:    1 MDALWLKKTVGEPLLNGLAATAEFQPEDSIDFLGRYLLKYVELKEAESK 49          
BLAST of mRNA_M-pyrifera_M_contig81771.19142.1 vs. uniprot
Match: A0A0P1AN05_PLAHL (Histone H3 (Lys4) methyltransferase complex, subunit CPS25/DPY-30 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AN05_PLAHL)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    4 MDSGYLRETVSSPLGEALAAAVAAQADDPVQFVGEYLLRFVDRKEAEQKVR 156
            +D  YL ETVS PL EA+A     Q +DP++F+G +LL+ V  +EA+ +++
Sbjct:    7 LDHTYLHETVSVPLTEAMAQLAILQPEDPIEFLGNFLLKHVANEEAQHRIK 57          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81771.19142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A7S3UQ97_HETAK6.600e-850.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D8LRV6_ECTSI1.010e-753.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A329SH93_9STRA4.860e-749.02Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A7S0K0L7_CAFRO8.970e-757.78Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A0W8D126_PHYNI1.700e-647.06Flagella associated protein n=9 Tax=Phytophthora T... [more]
A0A5A8DUH8_CAFRO2.330e-657.78Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A8K1CNJ4_PYTOL4.350e-645.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WZC9_GLOUD8.140e-644.90Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S3PSB0_9STRA1.080e-546.94Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A0P1AN05_PLAHL1.530e-543.14Histone H3 (Lys4) methyltransferase complex, subun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81771contigM-pyrifera_M_contig81771:10..165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.2981555-CDS-M-pyrifera_M_contig81771:9..1621622816725.2981555-CDS-M-pyrifera_M_contig81771:9..162Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81771 10..162 -
1692278142.3720393-CDS-M-pyrifera_M_contig81771:9..1621692278142.3720393-CDS-M-pyrifera_M_contig81771:9..162Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81771 10..162 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.3094459-UTR-M-pyrifera_M_contig81771:162..1651622816725.3094459-UTR-M-pyrifera_M_contig81771:162..165Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81771 163..165 -
1692278142.382985-UTR-M-pyrifera_M_contig81771:162..1651692278142.382985-UTR-M-pyrifera_M_contig81771:162..165Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81771 163..165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81771.19142.1prot_M-pyrifera_M_contig81771.19142.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81771 10..162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81771.19142.1

>prot_M-pyrifera_M_contig81771.19142.1 ID=prot_M-pyrifera_M_contig81771.19142.1|Name=mRNA_M-pyrifera_M_contig81771.19142.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
MDSGYLRETVSSPLGEALAAAVAAQADDPVQFVGEYLLRFVDRKEAEQKV
R
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mRNA from alignment at M-pyrifera_M_contig81771:10..165-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81771.19142.1 ID=mRNA_M-pyrifera_M_contig81771.19142.1|Name=mRNA_M-pyrifera_M_contig81771.19142.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig81771:10..165- (Macrocystis pyrifera P11B4 male)
AAGATGGATTCCGGGTACCTTCGAGAGACGGTGTCTTCTCCGCTGGGGGA GGCTCTGGCGGCTGCGGTGGCGGCGCAGGCGGACGACCCCGTGCAGTTCG TGGGGGAGTATTTGCTGCGTTTCGTGGACCGAAAGGAGGCGGAGCAAAAA GTACGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81771:10..165-

>mRNA_M-pyrifera_M_contig81771.19142.1 ID=mRNA_M-pyrifera_M_contig81771.19142.1|Name=mRNA_M-pyrifera_M_contig81771.19142.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig81771:10..165- (Macrocystis pyrifera P11B4 male)
ATGGATTCCGGGTACCTTCGAGAGACGGTGTCTTCTCCGCTGGGGGAGGC
TCTGGCGGCTGCGGTGGCGGCGCAGGCGGACGACCCCGTGCAGTTCGTGG
GGGAGTATTTGCTGCGTTTCGTGGACCGAAAGGAGGCGGAGCAAAAAGTA
CGGATGGATTCCGGGTACCTTCGAGAGACGGTGTCTTCTCCGCTGGGGGA
GGCTCTGGCGGCTGCGGTGGCGGCGCAGGCGGACGACCCCGTGCAGTTCG
TGGGGGAGTATTTGCTGCGTTTCGTGGACCGAAAGGAGGCGGAGCAAAAA
GTACGG
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