mRNA_M-pyrifera_M_contig81343.19024.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81343.19024.1
Unique NamemRNA_M-pyrifera_M_contig81343.19024.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81343.19024.1 vs. uniprot
Match: D8LI16_ECTSI (NAGPA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI16_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 2.260e-47
Identity = 121/205 (59.02%), Postives = 138/205 (67.32%), Query Frame = 1 
Query:    1 QTSGAATGADQDSSIPDGLDLSELADVLVEAGAVNAVNLVGGSPAALSVNGSAVIGPAGACSDIADSDSGDSGFGKGSTLPRCERPVSSLVCVHPNPPPLVAGAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPTSAHGGMSSNSEGDDWDEGWDXXXXGKEEARLQWTEELCANNGTGTAVGLWEHLDDLEESALRYK 615
            QTSGAA G+DQD++IPDGLDLSELADVLVEAGAVNA+NLVGG+P+A+ VNGSA++ PAG CS  A+      GF  GS LPRCE PVSS+VCVH +PPPL+ GA               XXXXXXXXXXXXXXXXXXX           N+E                EARL+WT ELC  NGTG A  LWEHLD++EES LRYK
Sbjct:  750 QTSGAAAGSDQDTAIPDGLDLSELADVLVEAGAVNAINLVGGAPSAMMVNGSAIVDPAGPCSTSAEDSDSYGGFRDGSALPRCEIPVSSIVCVHLDPPPLIEGAEGIDGTPSPSLQPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDNTE----------------EARLRWTRELCGGNGTGNATSLWEHLDNVEESVLRYK 938
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BLAST of mRNA_M-pyrifera_M_contig81343.19024.1 vs. uniprot
Match: A0A6H5KPM3_9PHAE (NAGPA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPM3_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.280e-35
Identity = 108/203 (53.20%), Postives = 123/203 (60.59%), Query Frame = 1 
Query:   10 GAATGADQDSSIPDGLDLSELADVLVEAGAVNAVNLVGGSPAALSVNGSAVIGPAGACSDIADSDSGD-SGFGKGSTLPRCERPVSSLVCVHPNPPPLVAGAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPTSAHGGMSSNSEGDDWDEGWDXXXXGKEEARLQWTEELCANNGTGTAVGLWEHLDDLEESALRYK 615
            G A G+DQD++IPDGLDLSELAD+LVEAGAVNA+NLVGG+P+A+                + + DSG   GF  GS LPRCE PVSS+VCVH +PPPL+ GA               XXXXXXXXXXXXXXXXXXX           N+E                E RLQWT ELC  NGTG A  LWEHLD +EES LRYK
Sbjct:  153 GKAAGSDQDTAIPDGLDLSELADMLVEAGAVNAINLVGGAPSAM----------------MEEWDSGSYGGFTDGSALPRCEIPVSSIVCVHLDPPPLIEGAEGVDSTPSPSLQPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDNTE----------------EVRLQWTRELCGANGTGNATSLWEHLDSVEESVLRYK 323
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BLAST of mRNA_M-pyrifera_M_contig81343.19024.1 vs. uniprot
Match: A0A8H6PCD6_9EURO (NAGPA domain-containing protein n=1 Tax=Aspergillus hiratsukae TaxID=1194566 RepID=A0A8H6PCD6_9EURO)

HSP 1 Score: 56.6 bits (135), Expect = 4.800e-6
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:   49 DGLDLSELADVLVEAGAVNAVNLVGGSPAALSVNGSAVIGPAGACSDIADSDSGDSGFGKGSTLPRCERPVSSLVCVHPNPPPLVAGA 312
            DG+DL  LAD++VE G + A+NL GG  +  +VNG  V  P+  C+       GDS     + L  CER VS++VC+H +P  LV GA
Sbjct:  253 DGIDLFTLADMMVELGFIQAINLDGGGSSDTAVNGVLVSSPSDRCA-------GDS-----TGLFGCERAVSTIVCLHSSPQQLVVGA 328
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81343.19024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LI16_ECTSI2.260e-4759.02NAGPA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KPM3_9PHAE1.280e-3553.20NAGPA domain-containing protein (Fragment) n=1 Tax... [more]
A0A8H6PCD6_9EURO4.800e-643.18NAGPA domain-containing protein n=1 Tax=Aspergillu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81343contigM-pyrifera_M_contig81343:198..866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue1.2e-42
Seed eggNOG ortholog2880.D8LI16
Preferred nameNAGPA
KEGG koko:K01125
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0002790,GO:0003674,GO:0003824,GO:0003944,GO:0004553,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0005975,GO:0006464,GO:0006605,GO:0006622,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0015929,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0016798,GO:0019538,GO:0031224,GO:0031226,GO:0032940,GO:0033036,GO:0033299,GO:0033365,GO:0034613,GO:0036211,GO:0042886,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:1901564
EggNOG free text desc.N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
EggNOG OGs28JJ0@1,2QRY5@2759
EC3.1.4.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.6365101-CDS-M-pyrifera_M_contig81343:197..5951622816719.6365101-CDS-M-pyrifera_M_contig81343:197..595Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81343 198..595 -
1692278139.0397828-CDS-M-pyrifera_M_contig81343:197..5951692278139.0397828-CDS-M-pyrifera_M_contig81343:197..595Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81343 198..595 -
1622816719.6477523-CDS-M-pyrifera_M_contig81343:649..8661622816719.6477523-CDS-M-pyrifera_M_contig81343:649..866Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81343 650..866 -
1692278139.0500968-CDS-M-pyrifera_M_contig81343:649..8661692278139.0500968-CDS-M-pyrifera_M_contig81343:649..866Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81343 650..866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81343.19024.1prot_M-pyrifera_M_contig81343.19024.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81343 198..866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81343.19024.1

>prot_M-pyrifera_M_contig81343.19024.1 ID=prot_M-pyrifera_M_contig81343.19024.1|Name=mRNA_M-pyrifera_M_contig81343.19024.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
QTSGAATGADQDSSIPDGLDLSELADVLVEAGAVNAVNLVGGSPAALSVN
GSAVIGPAGACSDIADSDSGDSGFGKGSTLPRCERPVSSLVCVHPNPPPL
VAGAGEAGGDSGGGGGSSGNNSSSSSSSSGGGGGGGSGFPTSAHGGMSSN
SEGDDWDEGWDDDGGGKEEARLQWTEELCANNGTGTAVGLWEHLDDLEES
ALRYK
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mRNA from alignment at M-pyrifera_M_contig81343:198..866-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81343.19024.1 ID=mRNA_M-pyrifera_M_contig81343.19024.1|Name=mRNA_M-pyrifera_M_contig81343.19024.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=669bp|location=Sequence derived from alignment at M-pyrifera_M_contig81343:198..866- (Macrocystis pyrifera P11B4 male)
CAGACCTCCGGAGCCGCCACGGGAGCCGACCAGGACTCCTCCATCCCCGA
CGGCCTCGACCTGTCAGAGCTCGCGGACGTCCTTGTCGAAGCGGGCGCTG
TCAACGCGGTCAACCTAGTCGGAGGTTCCCCCGCGGCTCTCAGCGTTAAC
GGGAGCGCTGTCATAGGACCCGCGGGGGCTTGCTCCGACATCGCCGACAG
CGACAGCGGCGACAGCGGTGGCGGCAGCAGCAGCAGTAGCGGTGGCGGCG
GCGGCGGTGGTGGTAGGTCAGGGTTCGGGAAGGGCTCGACGTTGCCTCGG
TGCGAACGACCGGTGTCCAGCCTCGTGTGCGTGCACCCGAATCCTCCGCC
ACTTGTTGCCGGGGCTGGGGAGGCGGGGGGCGACAGCGGCGGCGGCGGCG
GCAGCAGCGGCAACAACAGCAGTAGCAGTAGTAGCAGCAGCGGCGGCGGC
GGCGGCGGCGGGTCAGGTTTCCCCACCTCTGCTCACGGAGGGATGTCTTC
GAACTCGGAGGGAGATGATTGGGACGAAGGGTGGGATGATGACGGCGGGG
GAAAGGAGGAGGCGAGGCTGCAATGGACGGAAGAGCTGTGCGCGAATAAT
GGTACGGGGACTGCGGTGGGGCTGTGGGAGCACCTGGATGATTTGGAGGA
GTCTGCCCTGCGGTACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81343:198..866-

>mRNA_M-pyrifera_M_contig81343.19024.1 ID=mRNA_M-pyrifera_M_contig81343.19024.1|Name=mRNA_M-pyrifera_M_contig81343.19024.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig81343:198..866- (Macrocystis pyrifera P11B4 male)
CAGACCTCCGGAGCCGCCACGGGAGCCGACCAGGACTCCTCCATCCCCGA
CGGCCTCGACCTGTCAGAGCTCGCGGACGTCCTTGTCGAAGCGGGCGCTG
TCAACGCGGTCAACCTAGTCGGAGGTTCCCCCGCGGCTCTCAGCGTTAAC
GGGAGCGCTGTCATAGGACCCGCGGGGGCTTGCTCCGACATCGCCGACAG
CGACAGCGGCGACAGCGCAGACCTCCGGAGCCGCCACGGGAGCCGACCAG
GACTCCTCCATCCCCGACGGCCTCGACCTGTCAGAGCTCGCGGACGTCCT
TGTCGAAGCGGGCGCTGTCAACGCGGTCAACCTAGTCGGAGGTTCCCCCG
CGGCTCTCAGCGTTAACGGGAGCGCTGTCATAGGACCCGCGGGGGCTTGC
TCCGACATCGCCGACAGCGACAGCGGCGACAGCGGGTTCGGGAAGGGCTC
GACGTTGCCTCGGTGCGAACGACCGGTGTCCAGCCTCGTGTGCGTGCACC
CGAATCCTCCGCCACTTGTTGCCGGGGCTGGGGAGGCGGGGGGCGACAGC
GGCGGCGGCGGCGGCAGCAGCGGCAACAACAGCAGTAGCAGTAGTAGCAG
CAGCGGCGGCGGCGGCGGCGGCGGGTCAGGTTTCCCCACCTCTGCTCACG
GAGGGATGTCTTCGAACTCGGAGGGAGATGATTGGGACGAAGGGTGGGAT
GATGACGGCGGGGGAAAGGAGGAGGCGAGGCTGCAATGGACGGAAGAGCT
GTGCGCGAATAATGGTACGGGGACTGCGGTGGGGCTGTGGGAGCACCTGG
ATGATTTGGAGGAGTCTGCCCTGCGGTACAAGGGTTCGGGAAGGGCTCGA
CGTTGCCTCGGTGCGAACGACCGGTGTCCAGCCTCGTGTGCGTGCACCCG
AATCCTCCGCCACTTGTTGCCGGGGCTGGGGAGGCGGGGGGCGACAGCGG
CGGCGGCGGCGGCAGCAGCGGCAACAACAGCAGTAGCAGTAGTAGCAGCA
GCGGCGGCGGCGGCGGCGGCGGGTCAGGTTTCCCCACCTCTGCTCACGGA
GGGATGTCTTCGAACTCGGAGGGAGATGATTGGGACGAAGGGTGGGATGA
TGACGGCGGGGGAAAGGAGGAGGCGAGGCTGCAATGGACGGAAGAGCTGT
GCGCGAATAATGGTACGGGGACTGCGGTGGGGCTGTGGGAGCACCTGGAT
GATTTGGAGGAGTCTGCCCTGCGGTACAAG
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