mRNA_M-pyrifera_M_contig81311.19018.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81311.19018.1
Unique NamemRNA_M-pyrifera_M_contig81311.19018.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81311.19018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81311contigM-pyrifera_M_contig81311:130..456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size309
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.410282-UTR-M-pyrifera_M_contig81311:129..1471622816719.410282-UTR-M-pyrifera_M_contig81311:129..147Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81311 130..147 +
1692278138.954092-UTR-M-pyrifera_M_contig81311:129..1471692278138.954092-UTR-M-pyrifera_M_contig81311:129..147Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81311 130..147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.4222112-CDS-M-pyrifera_M_contig81311:147..4561622816719.4222112-CDS-M-pyrifera_M_contig81311:147..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81311 148..456 +
1692278138.9636223-CDS-M-pyrifera_M_contig81311:147..4561692278138.9636223-CDS-M-pyrifera_M_contig81311:147..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81311 148..456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81311.19018.1prot_M-pyrifera_M_contig81311.19018.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81311 148..456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81311.19018.1

>prot_M-pyrifera_M_contig81311.19018.1 ID=prot_M-pyrifera_M_contig81311.19018.1|Name=mRNA_M-pyrifera_M_contig81311.19018.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MNSDGSAVFGGPGDGTPIAIASLVPRGPELRQRLLRSYDRRSAFVHAGTQ
SPQAEEMSEKVGLRPGASLSFAGLRSILRELILHHLPHPPEESALPDVQL
RG*
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mRNA from alignment at M-pyrifera_M_contig81311:130..456+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81311.19018.1 ID=mRNA_M-pyrifera_M_contig81311.19018.1|Name=mRNA_M-pyrifera_M_contig81311.19018.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig81311:130..456+ (Macrocystis pyrifera P11B4 male)
TTCGTGCCGCGGATAACCATGAATAGCGATGGCTCCGCAGTCTTCGGCGG
CCCCGGCGACGGCACACCGATTGCGATCGCTTCCCTCGTGCCCCGCGGCC
CGGAACTGCGGCAGCGGCTGCTACGTAGCTACGACCGGAGGTCCGCGTTC
GTCCATGCGGGTACTCAGTCCCCTCAAGCCGAGGAGATGTCTGAGAAAGT
CGGCCTCCGGCCTGGGGCGTCGCTCTCATTCGCTGGCCTCCGATCGATCC
TCAGAGAGTTGATCCTCCATCACCTGCCACACCCTCCAGAGGAATCAGCC
CTGCCTGACGTGCAGCTGCGAGGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81311:130..456+

>mRNA_M-pyrifera_M_contig81311.19018.1 ID=mRNA_M-pyrifera_M_contig81311.19018.1|Name=mRNA_M-pyrifera_M_contig81311.19018.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig81311:130..456+ (Macrocystis pyrifera P11B4 male)
ATGAATAGCGATGGCTCCGCAGTCTTCGGCGGCCCCGGCGACGGCACACC
GATTGCGATCGCTTCCCTCGTGCCCCGCGGCCCGGAACTGCGGCAGCGGC
TGCTACGTAGCTACGACCGGAGGTCCGCGTTCGTCCATGCGGGTACTCAG
TCCCCTCAAGCCGAGGAGATGTCTGAGAAAGTCGGCCTCCGGCCTGGGGC
GTCGCTCTCATTCGCTGGCCTCCGATCGATCCTCAGAGAGTTGATCCTCC
ATCACCTGCCACACCCTCCAGAGGAATCAGCCCTGCCTGACGTGCAGCTG
CGAGGGTAGATGAATAGCGATGGCTCCGCAGTCTTCGGCGGCCCCGGCGA
CGGCACACCGATTGCGATCGCTTCCCTCGTGCCCCGCGGCCCGGAACTGC
GGCAGCGGCTGCTACGTAGCTACGACCGGAGGTCCGCGTTCGTCCATGCG
GGTACTCAGTCCCCTCAAGCCGAGGAGATGTCTGAGAAAGTCGGCCTCCG
GCCTGGGGCGTCGCTCTCATTCGCTGGCCTCCGATCGATCCTCAGAGAGT
TGATCCTCCATCACCTGCCACACCCTCCAGAGGAATCAGCCCTGCCTGAC
GTGCAGCTGCGAGGGTAG
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