mRNA_M-pyrifera_M_contig81308.19017.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81308.19017.1
Unique NamemRNA_M-pyrifera_M_contig81308.19017.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81308.19017.1 vs. uniprot
Match: A0A7S3GCL0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GCL0_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 2.120e-9
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:   22 AALARAVAEKEAELSAMTAYRVRHLERLVEEKEVGLREAQHRFERLREDFEYNLGLLRERDAELEAW 222
            AAL + V +KE EL+ + A+RV+ LE    EKE  +   QHRF+RL+EDF+YNL L+ ERD ELE +
Sbjct:   28 AALGKLVEDKERELAEIHAFRVKSLEAAAVEKEERIGNLQHRFDRLKEDFKYNLRLIEERDEELERY 94
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BLAST of mRNA_M-pyrifera_M_contig81308.19017.1 vs. uniprot
Match: A0A7S3GCK7_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GCK7_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 7.990e-9
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:   22 AALARAVAEKEAELSAMTAYRVRHLERLVEEKEVGLREAQHRFERLREDFEYNLGLLRERDAELEAW 222
            AAL + V +KE EL+ + A+RV+ LE    EKE  +   QHRF+RL+EDF+YNL L+ ERD ELE +
Sbjct:   28 AALGKLVEDKERELAEIHAFRVKSLEAAAVEKEERIGNLQHRFDRLKEDFKYNLRLIEERDEELERY 94
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BLAST of mRNA_M-pyrifera_M_contig81308.19017.1 vs. uniprot
Match: A0A7S2WNF5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WNF5_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 7.260e-5
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   40 VAEKEAELSAMTAYRVRHLERLVEEKEVGLREAQHRFERLREDFEYNLGLLRERDAEL 213
            + +KE EL  +  YR+R LE+ + EKE  L   + RF +L+EDF+YNL L+ +RD EL
Sbjct:   98 IQQKEKELHDINDYRIRSLEQSLREKESQLEVQRERFSKLKEDFQYNLKLIEDRDTEL 155
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BLAST of mRNA_M-pyrifera_M_contig81308.19017.1 vs. uniprot
Match: D7FLG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG3_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 9.850e-5
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   28 LARAVAEKEAELSAMTAYRVRHLERLVEEKEVGLREAQHRFERLREDFEYNLGLLRERDAEL 213
            L + +  KE EL  +  +R+R LE L+EE+E  L ++  R+++L+EDF++NLGL+ +RD EL
Sbjct:  161 LRQLIETKERELHEIHDFRLRSLEGLLEEREATLADSFARYDKLKEDFKFNLGLIEDRDVEL 222
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81308.19017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3GCL0_9EUKA2.120e-952.24Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A7S3GCK7_9EUKA7.990e-952.24Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A7S2WNF5_9STRA7.260e-546.55Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
D7FLG3_ECTSI9.850e-543.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81308contigM-pyrifera_M_contig81308:711..932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size210
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.3558931-UTR-M-pyrifera_M_contig81308:710..7221622816719.3558931-UTR-M-pyrifera_M_contig81308:710..722Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81308 711..722 +
1692278138.934752-UTR-M-pyrifera_M_contig81308:710..7221692278138.934752-UTR-M-pyrifera_M_contig81308:710..722Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81308 711..722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.3679924-CDS-M-pyrifera_M_contig81308:722..9321622816719.3679924-CDS-M-pyrifera_M_contig81308:722..932Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81308 723..932 +
1692278138.9446573-CDS-M-pyrifera_M_contig81308:722..9321692278138.9446573-CDS-M-pyrifera_M_contig81308:722..932Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81308 723..932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81308.19017.1prot_M-pyrifera_M_contig81308.19017.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81308 723..932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81308.19017.1

>prot_M-pyrifera_M_contig81308.19017.1 ID=prot_M-pyrifera_M_contig81308.19017.1|Name=mRNA_M-pyrifera_M_contig81308.19017.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MDDAALARAVAEKEAELSAMTAYRVRHLERLVEEKEVGLREAQHRFERLR
EDFEYNLGLLRERDAELEAW
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mRNA from alignment at M-pyrifera_M_contig81308:711..932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81308.19017.1 ID=mRNA_M-pyrifera_M_contig81308.19017.1|Name=mRNA_M-pyrifera_M_contig81308.19017.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig81308:711..932+ (Macrocystis pyrifera P11B4 male)
CTGTCTCCTGCGATGGACGACGCGGCGCTGGCGCGGGCGGTGGCGGAGAA
GGAGGCCGAGCTGAGCGCGATGACGGCATATCGGGTGCGTCACCTGGAGC
GTCTTGTGGAGGAGAAGGAGGTGGGATTGCGGGAGGCGCAGCATCGGTTC
GAGCGGCTGCGGGAGGACTTTGAGTACAATCTGGGCCTGTTGCGGGAGCG
CGACGCGGAGCTGGAGGCGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81308:711..932+

>mRNA_M-pyrifera_M_contig81308.19017.1 ID=mRNA_M-pyrifera_M_contig81308.19017.1|Name=mRNA_M-pyrifera_M_contig81308.19017.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig81308:711..932+ (Macrocystis pyrifera P11B4 male)
ATGGACGACGCGGCGCTGGCGCGGGCGGTGGCGGAGAAGGAGGCCGAGCT
GAGCGCGATGACGGCATATCGGGTGCGTCACCTGGAGCGTCTTGTGGAGG
AGAAGGAGGTGGGATTGCGGGAGGCGCAGCATCGGTTCGAGCGGCTGCGG
GAGGACTTTGAGTACAATCTGGGCCTGTTGCGGGAGCGCGACGCGGAGCT
GGAGGCGTGGATGGACGACGCGGCGCTGGCGCGGGCGGTGGCGGAGAAGG
AGGCCGAGCTGAGCGCGATGACGGCATATCGGGTGCGTCACCTGGAGCGT
CTTGTGGAGGAGAAGGAGGTGGGATTGCGGGAGGCGCAGCATCGGTTCGA
GCGGCTGCGGGAGGACTTTGAGTACAATCTGGGCCTGTTGCGGGAGCGCG
ACGCGGAGCTGGAGGCGTGG
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