mRNA_M-pyrifera_M_contig80930.18927.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80930.18927.1
Unique NamemRNA_M-pyrifera_M_contig80930.18927.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80930.18927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80930contigM-pyrifera_M_contig80930:45..917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size873
Cds size855
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.8252432-CDS-M-pyrifera_M_contig80930:44..8991622816713.8252432-CDS-M-pyrifera_M_contig80930:44..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80930 45..899 -
1692278135.7138586-CDS-M-pyrifera_M_contig80930:44..8991692278135.7138586-CDS-M-pyrifera_M_contig80930:44..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80930 45..899 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.837824-UTR-M-pyrifera_M_contig80930:899..9171622816713.837824-UTR-M-pyrifera_M_contig80930:899..917Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80930 900..917 -
1692278135.7251177-UTR-M-pyrifera_M_contig80930:899..9171692278135.7251177-UTR-M-pyrifera_M_contig80930:899..917Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80930 900..917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80930.18927.1prot_M-pyrifera_M_contig80930.18927.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80930 45..899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80930.18927.1

>prot_M-pyrifera_M_contig80930.18927.1 ID=prot_M-pyrifera_M_contig80930.18927.1|Name=mRNA_M-pyrifera_M_contig80930.18927.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=285bp
MFVDALEQVADSFGLTLDTSRTPSLVRDTSFNAVHLKGKYNLELAIGNLE
RYHAMQHDYRLLIDGDRLLTITTQEYARYNARTVVYPIDWATGQTTSEIF
HAVEGILEGNDGVTQIQKVSASLVVFAVPEVQDEARSIIEQLRSTFEISE
HQRDQNARVAQQERIQEIQRKLSSVKIKLQELEFENSDRLSTISEMSRVD
LTPEDAHKLSRLSDEQLALRREIEEAKAHYEYLRDLLIQQEYQHLELSAE
HGAGLSAVPPRSSNPMGMDVITITGPNVMRAGVYE
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mRNA from alignment at M-pyrifera_M_contig80930:45..917-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80930.18927.1 ID=mRNA_M-pyrifera_M_contig80930.18927.1|Name=mRNA_M-pyrifera_M_contig80930.18927.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=873bp|location=Sequence derived from alignment at M-pyrifera_M_contig80930:45..917- (Macrocystis pyrifera P11B4 male)
TTCAATCTCGATAACTTGATGTTCGTCGATGCACTCGAGCAAGTCGCTGA
TAGCTTTGGATTGACGCTCGATACGAGTCGGACCCCTTCGCTTGTTCGGG
ATACTTCGTTCAATGCTGTGCATCTGAAGGGCAAATACAATCTCGAACTC
GCGATCGGGAATCTGGAGCGTTATCACGCGATGCAGCACGACTATCGCTT
GCTCATCGACGGCGATCGTCTCCTGACAATCACAACGCAGGAGTACGCTC
GTTACAACGCACGCACAGTCGTGTATCCGATCGATTGGGCAACAGGACAA
ACTACATCAGAGATCTTCCACGCAGTCGAGGGGATCCTCGAGGGAAACGA
CGGCGTGACCCAGATCCAGAAAGTGTCTGCATCACTCGTCGTCTTCGCTG
TCCCAGAAGTACAGGATGAAGCACGCAGCATCATCGAGCAGCTGCGTTCG
ACATTCGAGATCTCAGAGCATCAGCGTGATCAGAACGCTCGGGTCGCGCA
GCAAGAACGCATCCAAGAGATCCAGCGAAAACTCTCGAGCGTGAAGATCA
AGCTGCAAGAGCTCGAGTTCGAAAACAGCGATCGATTGAGCACGATTTCG
GAAATGAGTCGAGTTGATCTGACGCCCGAAGACGCTCATAAACTCTCACG
GCTCAGCGACGAGCAGCTGGCGCTCCGCAGAGAGATCGAAGAAGCCAAAG
CGCACTACGAGTATCTGCGTGATCTGTTGATCCAGCAGGAATATCAGCAT
CTTGAACTGAGTGCTGAGCACGGCGCCGGCTTGTCAGCAGTGCCGCCGCG
ATCCTCGAACCCCATGGGGATGGATGTCATCACGATCACGGGACCAAATG
TCATGCGTGCGGGAGTCTATGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80930:45..917-

>mRNA_M-pyrifera_M_contig80930.18927.1 ID=mRNA_M-pyrifera_M_contig80930.18927.1|Name=mRNA_M-pyrifera_M_contig80930.18927.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1710bp|location=Sequence derived from alignment at M-pyrifera_M_contig80930:45..917- (Macrocystis pyrifera P11B4 male)
ATGTTCGTCGATGCACTCGAGCAAGTCGCTGATAGCTTTGGATTGACGCT
CGATACGAGTCGGACCCCTTCGCTTGTTCGGGATACTTCGTTCAATGCTG
TGCATCTGAAGGGCAAATACAATCTCGAACTCGCGATCGGGAATCTGGAG
CGTTATCACGCGATGCAGCACGACTATCGCTTGCTCATCGACGGCGATCG
TCTCCTGACAATCACAACGCAGGAGTACGCTCGTTACAACGCACGCACAG
TCGTGTATCCGATCGATTGGGCAACAGGACAAACTACATCAGAGATCTTC
CACGCAGTCGAGGGGATCCTCGAGGGAAACGACGGCGTGACCCAGATCCA
GAAAGTGTCTGCATCACTCGTCGTCTTCGCTGTCCCAGAAGTACAGGATG
AAGCACGCAGCATCATCGAGCAGCTGCGTTCGACATTCGAGATCTCAGAG
CATCAGCGTGATCAGAACGCTCGGGTCGCGCAGCAAGAACGCATCCAAGA
GATCCAGCGAAAACTCTCGAGCGTGAAGATCAAGCTGCAAGAGCTCGAGT
TCGAAAACAGCGATCGATTGAGCACGATTTCGGAAATGAGTCGAGTTGAT
CTGACGCCCGAAGACGCTCATAAACTCTCACGGCTCAGCGACGAGCAGCT
GGCGCTCCGCAGAGAGATCGAAGAAGCCAAAGCGCACTACGAGTATCTGC
GTGATCTGTTGATCCAGCAGGAATATCAGCATCTTGAACTGAGTGCTGAG
CACGGCGCCGGCTTGTCAGCAGTGCCGCCGCGATCCTCGAACCCCATGGG
GATGGATGTCATCACGATCACGGGACCAAATGTCATGCGTGCGGGAGTCT
ATGAGATGTTCGTCGATGCACTCGAGCAAGTCGCTGATAGCTTTGGATTG
ACGCTCGATACGAGTCGGACCCCTTCGCTTGTTCGGGATACTTCGTTCAA
TGCTGTGCATCTGAAGGGCAAATACAATCTCGAACTCGCGATCGGGAATC
TGGAGCGTTATCACGCGATGCAGCACGACTATCGCTTGCTCATCGACGGC
GATCGTCTCCTGACAATCACAACGCAGGAGTACGCTCGTTACAACGCACG
CACAGTCGTGTATCCGATCGATTGGGCAACAGGACAAACTACATCAGAGA
TCTTCCACGCAGTCGAGGGGATCCTCGAGGGAAACGACGGCGTGACCCAG
ATCCAGAAAGTGTCTGCATCACTCGTCGTCTTCGCTGTCCCAGAAGTACA
GGATGAAGCACGCAGCATCATCGAGCAGCTGCGTTCGACATTCGAGATCT
CAGAGCATCAGCGTGATCAGAACGCTCGGGTCGCGCAGCAAGAACGCATC
CAAGAGATCCAGCGAAAACTCTCGAGCGTGAAGATCAAGCTGCAAGAGCT
CGAGTTCGAAAACAGCGATCGATTGAGCACGATTTCGGAAATGAGTCGAG
TTGATCTGACGCCCGAAGACGCTCATAAACTCTCACGGCTCAGCGACGAG
CAGCTGGCGCTCCGCAGAGAGATCGAAGAAGCCAAAGCGCACTACGAGTA
TCTGCGTGATCTGTTGATCCAGCAGGAATATCAGCATCTTGAACTGAGTG
CTGAGCACGGCGCCGGCTTGTCAGCAGTGCCGCCGCGATCCTCGAACCCC
ATGGGGATGGATGTCATCACGATCACGGGACCAAATGTCATGCGTGCGGG
AGTCTATGAG
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