mRNA_M-pyrifera_M_contig80921.18925.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80921.18925.1
Unique NamemRNA_M-pyrifera_M_contig80921.18925.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80921.18925.1 vs. uniprot
Match: A0A812MZH1_9DINO (Protein YIF1 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812MZH1_9DINO)

HSP 1 Score: 82.0 bits (201), Expect = 2.920e-16
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    4 LLEVGIAFGVLRVFASTSSLPLLDLLSLAGYKYVGLCLVAVAYLLGDRYGYYPALLYAIAATTSFVAAFLKAALPPPEASAHKSQNVAVLTIAALQPLLMWWLGS 318
            LLE+G A  +    A+ +  PLLDL++L GYKYVG+ L  +A+LL    G+Y ALLY  AA   F+   L+AA+PP  AS + ++N A+L    LQPL+MWWL S
Sbjct:  220 LLELG-ALRLGLFLAAATPPPLLDLVALGGYKYVGIVLSTLAFLLLGSIGFYVALLYTSAAMAFFLVQTLQAAVPPGTAS-NPNRNYAILAAGGLQPLIMWWLAS 322          
BLAST of mRNA_M-pyrifera_M_contig80921.18925.1 vs. uniprot
Match: UPI000626BCC9 (protein YIF1B-A n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI000626BCC9)

HSP 1 Score: 63.9 bits (154), Expect = 1.220e-9
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    4 LLEVGIAFGVLRVFASTSSLPLLDLLSLAGYKYVGLCLVAVAYLLGDRYGYYPALLYAIAATTSFVAAFLKAALPPP-----EASAHKSQNVAVLTIAALQPLLMWWLGS 318
            ++E+ +    L V    +SL  LDLL+  GYKYVG+ L  +  L   R+GYY  L+Y   +   F+   LK  + P       AS +K +   +L +AALQP+LMWWL S
Sbjct:  219 IIELVVYTITLYVMNMDTSLRTLDLLAYCGYKYVGINLALLTSLAFQRFGYYIVLVYFSISLAFFLVRSLKLRVIPEGHSSYSASGNKRRLYFILFVAALQPILMWWLSS 328          
BLAST of mRNA_M-pyrifera_M_contig80921.18925.1 vs. uniprot
Match: A0A158NAE1_ATTCE (Protein YIF1 n=25 Tax=Myrmicinae TaxID=34695 RepID=A0A158NAE1_ATTCE)

HSP 1 Score: 60.1 bits (144), Expect = 2.800e-8
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = 1
Query:   16 GIAFGVLRVFAST---------SSLPLLDLLSLAGYKYVGLCLVAVAYLLGDRYGYYPALLYAIAATTSFVAAFLKAALPPP-----EASAHKSQNVAVLTIAALQPLLMWWLGSFL 324
             +A+G++ +   T         +SL  LDLL+  GYKYVG+    +  LL  ++GYY  LLY  A+   F+   LK  + P       AS +K +   +L++A +QP+LMWWL   L
Sbjct:  209 ALAWGLIELLVHTVSLYVMNLQTSLATLDLLAYCGYKYVGINAALLISLLFRKFGYYIMLLYFSASLAVFLMRSLKLRVIPQGHSSYTASGNKRRLYFILSLAGIQPVLMWWLSYHL 325          
BLAST of mRNA_M-pyrifera_M_contig80921.18925.1 vs. uniprot
Match: UPI001ED86E03 (protein YIF1B-A n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86E03)

HSP 1 Score: 59.3 bits (142), Expect = 5.170e-8
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    4 LLEVGIAFGVLRVFASTSSLPLLDLLSLAGYKYVGLCLVAVAYLLGDRYGYYPALLYAIAATTSFVAAFLKAA-LPPPEASAH----KSQNVAVLTIAALQPLLMWWLGSFL 324
            L+E+ + F  L +    ++L  LDLL+ AGYKYVG+    +  LL  + GYY  L+Y+  A   F+   L+   LP    SA+    K +   +L +AA+QP++MW+L S L
Sbjct:  206 LVEIVVEFLTLYIANIKTNLKTLDLLAFAGYKYVGIIFAVLLSLLLRKVGYYVGLIYSSIALAFFLVRTLRVQILPESGQSAYSGGGKRRLYILLFVAAIQPVMMWFLSSHL 317          
BLAST of mRNA_M-pyrifera_M_contig80921.18925.1 vs. uniprot
Match: UPI00063EDAB1 (protein YIF1B-A n=1 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI00063EDAB1)

HSP 1 Score: 58.5 bits (140), Expect = 9.940e-8
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 1
Query:   16 GIAFGVLRVFAST---------SSLPLLDLLSLAGYKYVGLCLVAVAYLLGDRYGYYPALLYAIAATTSFVAAFLKAALPPP----EASAHKSQNVAVLTIAALQPLLMWWLGSFL 324
             +A+GV  +   T         +SL  LDLL+  GYKYVG+    +  LL  ++GY+  LLY   +   F+   LK  + P      AS +K +   +L++A +QPLLMWWL  +L
Sbjct:  212 ALAWGVFELVVHTVSLYVMNLQTSLATLDLLAYCGYKYVGINASLLISLLFRKFGYFVMLLYFSVSLGIFLMRSLKLRVIPQGHSYTASGNKRRLYFILSLACVQPLLMWWLSYYL 327          
BLAST of mRNA_M-pyrifera_M_contig80921.18925.1 vs. uniprot
Match: UPI000626A83E (protein YIF1B-A n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI000626A83E)

HSP 1 Score: 58.5 bits (140), Expect = 1.000e-7
Identity = 40/117 (34.19%), Postives = 60/117 (51.28%), Query Frame = 1
Query:   16 GIAFGVLRVFAST---------SSLPLLDLLSLAGYKYVGLCLVAVAYLLGDRYGYYPALLYAIAATTSFVAAFLKAALPPP-----EASAHKSQNVAVLTIAALQPLLMWWLGSFL 324
             +A+G++ +   T         +SL  LDLL+  GYKY G+    +  L+  R GYY  LLY  A+   F+   LK  + P       A+ +K +   +L +AA+QP+LMWWL   L
Sbjct:  210 ALAWGIIELLVHTITLYVMNLDTSLRTLDLLAYCGYKYAGINAALLVSLIFRRVGYYIVLLYTSASLAFFLIRSLKLRVIPEGHSPYTATGNKRRLYFILCLAAVQPVLMWWLSYHL 326          
BLAST of mRNA_M-pyrifera_M_contig80921.18925.1 vs. uniprot
Match: UPI000C253FD4 (protein YIF1B n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C253FD4)

HSP 1 Score: 57.0 bits (136), Expect = 3.700e-7
Identity = 38/102 (37.25%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   55 SSLPLLDLLSLAGYKYVGLCLVAVAYLLGDRYGYYPALLYAIAATTSFVAAFLKAAL------------PPPEASAHKSQNVAVLTIAALQPLLMWWLGSFL 324
            +SL  LDLL+ AGYK+VG+       +LG R GYY +LLY   A + F+   LK  +             P   + HK +   +L +AA+QP+L WWL   L
Sbjct:  255 TSLRTLDLLAYAGYKFVGIITSISISILGGRTGYYSSLLYTNLALSFFLVRSLKVQVLTEAVQDTSYYGGPQTTAGHKRRLYFLLFLAAVQPVLSWWLSYHL 356          
BLAST of mRNA_M-pyrifera_M_contig80921.18925.1 vs. uniprot
Match: A0A834HPE7_RHYFE (Protein YIF1 n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834HPE7_RHYFE)

HSP 1 Score: 54.3 bits (129), Expect = 3.250e-6
Identity = 39/117 (33.33%), Postives = 56/117 (47.86%), Query Frame = 1
Query:   10 EVGIAFGVLRVFASTSSLPLLDLLSLAGYKYVGLCLVAVAYLLGDRYGYYPALLYAIAATTSFVAAFLKAAL------------PPPEASAHKSQNVAVLTIAALQPLLMWWLGSFL 324
            E+ +    L V    +SL  LDLL+ +GYK+VG     +  LLG + G+Y AL+Y   A   F+   LK  +                 + HK +   +L +AA+QPLL WWL   L
Sbjct:  233 ELAVYSCTLYVIQVETSLKTLDLLAYSGYKFVGTIFSILFSLLGGKGGFYLALIYTNLALAFFLVRSLKVQVLAEHGAKDNSYYDSGHTTGHKRRLYFLLFVAAMQPLLSWWLSFHL 349          
BLAST of mRNA_M-pyrifera_M_contig80921.18925.1 vs. uniprot
Match: A0A6J2Y1P7_SITOR (Protein YIF1 n=2 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2Y1P7_SITOR)

HSP 1 Score: 53.9 bits (128), Expect = 4.490e-6
Identity = 37/119 (31.09%), Postives = 57/119 (47.90%), Query Frame = 1
Query:   10 EVGIAFGVLRVFASTSSLPLLDLLSLAGYKYVGLCLVAVAYLLGDRYGYYPALLYAIAATTSFVAAFLKAALPPPEAS--------------AHKSQNVAVLTIAALQPLLMWWLGSFL 324
            E+ I    L +    +SL  LDLL+ AGYK+VG  +  +  ++G + G+Y AL+Y   A   F+   LK  +     +               HK +   +L +AA+QP+L WWL   L
Sbjct:  239 ELAIYSCTLYIIQVETSLKTLDLLAYAGYKFVGTIVSILVSVIGGKIGFYMALIYTNLALAFFLVRSLKVQVLSENGAQDQSYYSAGGVATAGHKRRLYFLLFVAAMQPILSWWLSFHL 357          
BLAST of mRNA_M-pyrifera_M_contig80921.18925.1 vs. uniprot
Match: A0A5C6PD42_9TELE (Protein YIF1 n=2 Tax=Takifugu TaxID=31032 RepID=A0A5C6PD42_9TELE)

HSP 1 Score: 51.6 bits (122), Expect = 2.640e-5
Identity = 42/118 (35.59%), Postives = 58/118 (49.15%), Query Frame = 1
Query:    1 LLLEVGIAFGVLRVFASTSSLPLLDLLSLAGYKYVGLCLVAVAYLLGDRYGYYPALLYAIAATTSFVAAFLKAALPPPEASAHKSQNVA--------VLTIAALQPLLMWWLGSFLQR 330
            L++EV      L + A  + L  +DLL+ +GYKYVG+ +  VA LL  R  YY  LL+  AA   F+   L+  L    A+  K              ++IAA QPL M+WL   L R
Sbjct:  174 LIMEVLAVLLSLYLVAINTDLTTIDLLAFSGYKYVGMIIGVVAGLLFGRLAYYLCLLWCCAAIFVFMIRTLRLKLLSEAAAEGKLVRATRNQLRMYLTMSIAAAQPLFMFWLTYHLIR 291          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80921.18925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A812MZH1_9DINO2.920e-1647.62Protein YIF1 n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
UPI000626BCC91.220e-938.18protein YIF1B-A n=1 Tax=Athalia rosae TaxID=37344 ... [more]
A0A158NAE1_ATTCE2.800e-835.04Protein YIF1 n=25 Tax=Myrmicinae TaxID=34695 RepID... [more]
UPI001ED86E035.170e-836.61protein YIF1B-A n=1 Tax=Ischnura elegans TaxID=197... [more]
UPI00063EDAB19.940e-835.34protein YIF1B-A n=1 Tax=Monomorium pharaonis TaxID... [more]
UPI000626A83E1.000e-734.19protein YIF1B-A n=1 Tax=Orussus abietinus TaxID=22... [more]
UPI000C253FD43.700e-737.25protein YIF1B n=1 Tax=Leptinotarsa decemlineata Ta... [more]
A0A834HPE7_RHYFE3.250e-633.33Protein YIF1 n=1 Tax=Rhynchophorus ferrugineus Tax... [more]
A0A6J2Y1P7_SITOR4.490e-631.09Protein YIF1 n=2 Tax=Sitophilus oryzae TaxID=7048 ... [more]
A0A5C6PD42_9TELE2.640e-535.59Protein YIF1 n=2 Tax=Takifugu TaxID=31032 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80921contigM-pyrifera_M_contig80921:4..339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.7639062-CDS-M-pyrifera_M_contig80921:3..3391622816713.7639062-CDS-M-pyrifera_M_contig80921:3..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80921 4..339 +
1692278135.6871018-CDS-M-pyrifera_M_contig80921:3..3391692278135.6871018-CDS-M-pyrifera_M_contig80921:3..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80921 4..339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80921.18925.1prot_M-pyrifera_M_contig80921.18925.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80921 4..339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80921.18925.1

>prot_M-pyrifera_M_contig80921.18925.1 ID=prot_M-pyrifera_M_contig80921.18925.1|Name=mRNA_M-pyrifera_M_contig80921.18925.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
LLLEVGIAFGVLRVFASTSSLPLLDLLSLAGYKYVGLCLVAVAYLLGDRY
GYYPALLYAIAATTSFVAAFLKAALPPPEASAHKSQNVAVLTIAALQPLL
MWWLGSFLQRE*
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mRNA from alignment at M-pyrifera_M_contig80921:4..339+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80921.18925.1 ID=mRNA_M-pyrifera_M_contig80921.18925.1|Name=mRNA_M-pyrifera_M_contig80921.18925.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig80921:4..339+ (Macrocystis pyrifera P11B4 male)
CTCTTGTTGGAAGTTGGAATTGCTTTTGGTGTGCTGCGAGTCTTTGCCTC TACCTCCTCCCTCCCACTCCTTGACCTCCTTTCTCTTGCTGGCTACAAAT ACGTGGGTTTGTGCCTCGTCGCTGTTGCCTACCTCCTCGGTGATAGATAT GGATACTACCCTGCACTTCTCTACGCCATAGCTGCCACCACTTCCTTCGT TGCTGCATTCCTCAAAGCTGCCTTACCACCTCCCGAAGCCTCTGCTCACA AGTCACAAAACGTTGCTGTCCTCACCATTGCAGCACTCCAACCACTCCTC ATGTGGTGGCTTGGATCCTTCTTACAAAGAGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80921:4..339+

>mRNA_M-pyrifera_M_contig80921.18925.1 ID=mRNA_M-pyrifera_M_contig80921.18925.1|Name=mRNA_M-pyrifera_M_contig80921.18925.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig80921:4..339+ (Macrocystis pyrifera P11B4 male)
CTCTTGTTGGAAGTTGGAATTGCTTTTGGTGTGCTGCGAGTCTTTGCCTC
TACCTCCTCCCTCCCACTCCTTGACCTCCTTTCTCTTGCTGGCTACAAAT
ACGTGGGTTTGTGCCTCGTCGCTGTTGCCTACCTCCTCGGTGATAGATAT
GGATACTACCCTGCACTTCTCTACGCCATAGCTGCCACCACTTCCTTCGT
TGCTGCATTCCTCAAAGCTGCCTTACCACCTCCCGAAGCCTCTGCTCACA
AGTCACAAAACGTTGCTGTCCTCACCATTGCAGCACTCCAACCACTCCTC
ATGTGGTGGCTTGGATCCTTCTTACAAAGAGAGTAACTCTTGTTGGAAGT
TGGAATTGCTTTTGGTGTGCTGCGAGTCTTTGCCTCTACCTCCTCCCTCC
CACTCCTTGACCTCCTTTCTCTTGCTGGCTACAAATACGTGGGTTTGTGC
CTCGTCGCTGTTGCCTACCTCCTCGGTGATAGATATGGATACTACCCTGC
ACTTCTCTACGCCATAGCTGCCACCACTTCCTTCGTTGCTGCATTCCTCA
AAGCTGCCTTACCACCTCCCGAAGCCTCTGCTCACAAGTCACAAAACGTT
GCTGTCCTCACCATTGCAGCACTCCAACCACTCCTCATGTGGTGGCTTGG
ATCCTTCTTACAAAGAGAGTAA
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