mRNA_M-pyrifera_M_contig80911.18924.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80911.18924.1
Unique NamemRNA_M-pyrifera_M_contig80911.18924.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80911.18924.1 vs. uniprot
Match: UPI0018A96D9E (hypothetical protein n=1 Tax=Aliikangiella sp. G2MR2-5 TaxID=2788943 RepID=UPI0018A96D9E)

HSP 1 Score: 75.5 bits (184), Expect = 4.980e-14
Identity = 41/152 (26.97%), Postives = 76/152 (50.00%), Query Frame = 1 
Query:    7 KDDFNFMLGEWDADIRRFAADGTVTVETKGSWSAKASFGGKVIEDCLIEQHDGGNDV-AAYSLRTYCEETKRWEMVYFWAEQPASGLMAFVGNRVDNEMHLNLQQLTPNGLVAMAQIRFFDISENRFSWEIRKSLDNGVTWFISGSHKMRRR 459
            K D+ F++G W  + ++  A+G V       W  + +F G +++D     +  G+ V A  +LR++  + ++W+  Y  A         F+G+++D+E+HL+  + + +G     +IRF  I++N F WE   S D  V W +       RR
Sbjct:   36 KKDYEFLIGNWSCEWQKLDANGDVKNRANCQWDGRYTFNGNMVQDDFRMFNPQGDLVYAGTTLRSFSPQIEQWKHTYL-AVMGGPSFEDFIGDKIDDEIHLSATRKSIDGQETFMKIRFHSINKNSFRWESHTSTDKKV-WTLDSRIISNRR 185
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BLAST of mRNA_M-pyrifera_M_contig80911.18924.1 vs. uniprot
Match: UPI001F34F375 (hypothetical protein n=1 Tax=Hyphobacterium sp. SN044 TaxID=2912575 RepID=UPI001F34F375)

HSP 1 Score: 55.8 bits (133), Expect = 3.540e-6
Identity = 43/150 (28.67%), Postives = 67/150 (44.67%), Query Frame = 1 
Query:   13 DFNFMLGEWDADIRRFAADGTVTVETKGSWSAKASF---GGKVIEDCL--IEQHDGGNDVAAYSLRTYCEETKRWEMVYFWAEQPASGLMAFVGNRVDNEMHLN-------LQQLTPNGLVAMAQIRFFDISENRFSWEIRKSLDNGVTW 426
            +++F +GEWDA+ R    DG   V   G+      F   GGK I +    +EQ +G      +S+R Y E  + W M   W      G+ AF+        H         LQQ +  G   + + +F DI+ +RF W+   + D+G +W
Sbjct:   41 EYDFWIGEWDANWRGREEDGLHHV-ADGNRQYHLVFPVLGGKAIIELAQPMEQPEGEARGRGFSIRYYDEAREHWVMAQHWPNPQFDGV-AFLDQLTGRSDHGRIMVYSSALQQTSDAGNPTIRRYQFSDIAADRFRWDGANTTDHGDSW 188
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80911.18924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0018A96D9E4.980e-1426.97hypothetical protein n=1 Tax=Aliikangiella sp. G2M... [more]
UPI001F34F3753.540e-628.67hypothetical protein n=1 Tax=Hyphobacterium sp. SN... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80911contigM-pyrifera_M_contig80911:84..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score90.9
Seed ortholog evalue5.8e-16
Seed eggNOG ortholog1278307.KB907059_gene2692
Hectar predicted targeting categoryother localisation
EggNOG OGs1QNME@1224,1SVDK@1236,28X4T@1,2ZJ39@2
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size474
Cds size474
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.728174-CDS-M-pyrifera_M_contig80911:83..5571622816713.728174-CDS-M-pyrifera_M_contig80911:83..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80911 84..557 -
1692278135.676615-CDS-M-pyrifera_M_contig80911:83..5571692278135.676615-CDS-M-pyrifera_M_contig80911:83..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80911 84..557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80911.18924.1prot_M-pyrifera_M_contig80911.18924.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80911 84..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80911.18924.1

>prot_M-pyrifera_M_contig80911.18924.1 ID=prot_M-pyrifera_M_contig80911.18924.1|Name=mRNA_M-pyrifera_M_contig80911.18924.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
MSKDDFNFMLGEWDADIRRFAADGTVTVETKGSWSAKASFGGKVIEDCLI
EQHDGGNDVAAYSLRTYCEETKRWEMVYFWAEQPASGLMAFVGNRVDNEM
HLNLQQLTPNGLVAMAQIRFFDISENRFSWEIRKSLDNGVTWFISGSHKM
RRREGSS*
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mRNA from alignment at M-pyrifera_M_contig80911:84..557-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80911.18924.1 ID=mRNA_M-pyrifera_M_contig80911.18924.1|Name=mRNA_M-pyrifera_M_contig80911.18924.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig80911:84..557- (Macrocystis pyrifera P11B4 male)
ATGAGCAAAGACGATTTCAACTTCATGCTGGGAGAATGGGATGCGGATAT
TCGCCGCTTTGCAGCAGACGGAACAGTGACCGTGGAAACCAAAGGGAGCT
GGTCTGCTAAAGCGTCATTTGGCGGCAAAGTCATAGAAGACTGCTTGATT
GAGCAACACGATGGCGGCAATGATGTTGCGGCATATAGTCTTCGTACCTA
CTGTGAGGAAACGAAACGATGGGAAATGGTCTACTTTTGGGCTGAACAAC
CCGCATCTGGACTGATGGCTTTCGTAGGAAATCGAGTAGACAACGAAATG
CACCTGAACCTCCAACAACTCACCCCGAACGGATTAGTTGCAATGGCTCA
GATTCGCTTCTTCGATATTTCTGAGAATAGATTTTCGTGGGAAATTCGTA
AGAGCTTGGACAATGGCGTGACGTGGTTCATCAGTGGCTCACATAAGATG
CGACGCCGGGAAGGCAGCTCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80911:84..557-

>mRNA_M-pyrifera_M_contig80911.18924.1 ID=mRNA_M-pyrifera_M_contig80911.18924.1|Name=mRNA_M-pyrifera_M_contig80911.18924.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig80911:84..557- (Macrocystis pyrifera P11B4 male)
ATGAGCAAAGACGATTTCAACTTCATGCTGGGAGAATGGGATGCGGATAT
TCGCCGCTTTGCAGCAGACGGAACAGTGACCGTGGAAACCAAAGGGAGCT
GGTCTGCTAAAGCGTCATTTGGCGGCAAAGTCATAGAAGACTGCTTGATT
GAGCAACACGATGGCGGCAATGATGTTGCGGCATATAGTCTTCGTACCTA
CTGTGAGGAAACGAAACGATGGGAAATGGTCTACTTTTGGGCTGAACAAC
CCGCATCTGGACTGATGGCTTTCGTAGGAAATCGAGTAGACAACGAAATG
CACCTGAACCTCCAACAACTCACCCCGAACGGATTAGTTGCAATGGCTCA
GATTCGCTTCTTCGATATTTCTGAGAATAGATTTTCGTGGGAAATTCGTA
AGAGCTTGGACAATGGCGTGACGTGGTTCATCAGTGGCTCACATAAGATG
CGACGCCGGGAAGGCAGCTCCTGAATGAGCAAAGACGATTTCAACTTCAT
GCTGGGAGAATGGGATGCGGATATTCGCCGCTTTGCAGCAGACGGAACAG
TGACCGTGGAAACCAAAGGGAGCTGGTCTGCTAAAGCGTCATTTGGCGGC
AAAGTCATAGAAGACTGCTTGATTGAGCAACACGATGGCGGCAATGATGT
TGCGGCATATAGTCTTCGTACCTACTGTGAGGAAACGAAACGATGGGAAA
TGGTCTACTTTTGGGCTGAACAACCCGCATCTGGACTGATGGCTTTCGTA
GGAAATCGAGTAGACAACGAAATGCACCTGAACCTCCAACAACTCACCCC
GAACGGATTAGTTGCAATGGCTCAGATTCGCTTCTTCGATATTTCTGAGA
ATAGATTTTCGTGGGAAATTCGTAAGAGCTTGGACAATGGCGTGACGTGG
TTCATCAGTGGCTCACATAAGATGCGACGCCGGGAAGGCAGCTCCTGA
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