mRNA_M-pyrifera_M_contig80905.18922.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80905.18922.1
Unique NamemRNA_M-pyrifera_M_contig80905.18922.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80905.18922.1 vs. uniprot
Match: UPI001C850520 (FxSxx-COOH system tetratricopeptide repeat protein n=1 Tax=Actinoplanes sp. TRM66264-DLM TaxID=2856853 RepID=UPI001C850520)

HSP 1 Score: 63.9 bits (154), Expect = 1.860e-9
Identity = 43/118 (36.44%), Postives = 57/118 (48.31%), Query Frame = 1 
Query:    1 YVPRDVIEQQLRDNVASMGALGSVNRPMTTTILHGFGGTGKTQLAAHYFYRSEKRYPRKYWLQASSLDTLKGQMRNLALGLQLVTEDEKIGPTEVLSRIKRYFAGQEGASLFVFDDVD 354
            +V R+ I   LR  +AS GA            LHG+GG GKTQLAA Y +R    Y   +W+ A   + L  Q   LA  L LV++D   G  E   R  R +  + G  L VFD+ +
Sbjct:   93 FVGREAILAHLRTRLASDGAA-------VVMALHGWGGVGKTQLAAEYAHRYVADYDLVWWIAAEQTELLGEQFGALAAALGLVSDDSDAGDAE---REARAYLRRHGRWLVVFDNAE 200
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BLAST of mRNA_M-pyrifera_M_contig80905.18922.1 vs. uniprot
Match: A0A6G1HNH4_9PEZI (Uncharacterized protein n=1 Tax=Trichodelitschia bisporula TaxID=703511 RepID=A0A6G1HNH4_9PEZI)

HSP 1 Score: 53.9 bits (128), Expect = 6.090e-6
Identity = 30/90 (33.33%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:   94 ILHGFGGTGKTQLAAHYFYRSEKRYPR--KYWLQASSLDTLKGQMRNLALGLQLVTEDEKIGPTEVLSRIKRYFAG-QEGASLFVFDDVD 354
            ++HG GGTGKTQ+A  + Y  ++++P+   +W+ A S  T      ++A  L +++E EK    +V   +K Y +G + G  L + D+VD
Sbjct:  398 VVHGLGGTGKTQIALQFAYWVKEKHPQCSVFWVSAVSAATFTQDCSSIARELSILSEKEK--DKDVKDLVKEYLSGGRAGRWLLIIDNVD 485
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BLAST of mRNA_M-pyrifera_M_contig80905.18922.1 vs. uniprot
Match: A0A3D8Q514_9HELO (NB-ARC domain-containing protein n=1 Tax=Coleophoma crateriformis TaxID=565419 RepID=A0A3D8Q514_9HELO)

HSP 1 Score: 52.0 bits (123), Expect = 2.850e-5
Identity = 27/86 (31.40%), Postives = 44/86 (51.16%), Query Frame = 1 
Query:    1 YVPRDVIEQQLRDNVASMGALGSVNRPMTTTILHGFGGTGKTQLAAHYFYRSEKRYPRKYWLQASSLDTLKGQMRNLALGLQLVTE 258
            Y PR  +  +L   +      GSV   +   ++HG GGTGK+QLA  Y    + +Y    W+ A+ +DT++      A+ L+L T+
Sbjct:  353 YTPRHELSSKLETEMKVDHEEGSVQHAV---VIHGLGGTGKSQLALRYAEDHKDQYDPVLWIDATDMDTVRSSFERCAVELRLATD 435
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BLAST of mRNA_M-pyrifera_M_contig80905.18922.1 vs. uniprot
Match: UPI000CE21615 (vegetative incompatibility protein HET-E-1-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE21615)

HSP 1 Score: 50.4 bits (119), Expect = 9.280e-5
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 1 
Query:    1 YVPRDVIEQQLRDNVASMGALGSVNRPMTTTILHGFGGTGKTQLAAHYFYRSEKRYPRKYWLQASSLDTLKGQMRNLALGLQLVT 255
            +VPR+   Q L     S    G+  +     I+HG GGTGKTQL A +    ++++   +WL  SS D LK  + + AL L   T
Sbjct:  276 FVPREADMQYLTSFFMS----GTAAQRQRVFIVHGMGGTGKTQLCAEFARTYQEQFSAVFWLDGSSRDALKQSLASAALRLPAST 356
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80905.18922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001C8505201.860e-936.44FxSxx-COOH system tetratricopeptide repeat protein... [more]
A0A6G1HNH4_9PEZI6.090e-633.33Uncharacterized protein n=1 Tax=Trichodelitschia b... [more]
A0A3D8Q514_9HELO2.850e-531.40NB-ARC domain-containing protein n=1 Tax=Coleophom... [more]
UPI000CE216159.280e-535.29vegetative incompatibility protein HET-E-1-like n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80905contigM-pyrifera_M_contig80905:586..939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.4
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog517418.Ctha_1311
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM TPR repeat-containing protein
EggNOG OGs1FD7Y@1090,COG0457@1,COG0457@2,COG1672@1,COG1672@2
COG Functional cat.K
Best tax levelChlorobi
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.6566987-CDS-M-pyrifera_M_contig80905:585..9391622816713.6566987-CDS-M-pyrifera_M_contig80905:585..939Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80905 586..939 +
1692278135.648794-CDS-M-pyrifera_M_contig80905:585..9391692278135.648794-CDS-M-pyrifera_M_contig80905:585..939Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80905 586..939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80905.18922.1prot_M-pyrifera_M_contig80905.18922.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80905 586..939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80905.18922.1

>prot_M-pyrifera_M_contig80905.18922.1 ID=prot_M-pyrifera_M_contig80905.18922.1|Name=mRNA_M-pyrifera_M_contig80905.18922.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
YVPRDVIEQQLRDNVASMGALGSVNRPMTTTILHGFGGTGKTQLAAHYFY
RSEKRYPRKYWLQASSLDTLKGQMRNLALGLQLVTEDEKIGPTEVLSRIK
RYFAGQEGASLFVFDDVD
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mRNA from alignment at M-pyrifera_M_contig80905:586..939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80905.18922.1 ID=mRNA_M-pyrifera_M_contig80905.18922.1|Name=mRNA_M-pyrifera_M_contig80905.18922.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig80905:586..939+ (Macrocystis pyrifera P11B4 male)
TATGTTCCAAGGGATGTGATTGAGCAACAATTGCGCGACAATGTTGCATC
AATGGGTGCTTTAGGTTCAGTCAATCGCCCGATGACGACGACCATTCTGC
ATGGATTCGGCGGCACAGGCAAAACGCAGCTAGCGGCGCATTATTTTTAC
CGCAGTGAAAAGCGCTACCCGCGTAAGTATTGGTTGCAGGCCAGCAGCCT
GGATACCTTAAAGGGCCAAATGCGAAATTTAGCATTAGGATTGCAGCTTG
TCACTGAGGATGAAAAAATAGGCCCAACTGAGGTCTTAAGTCGTATTAAG
CGATATTTTGCAGGGCAAGAGGGTGCAAGTTTATTCGTTTTTGATGATGT
AGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80905:586..939+

>mRNA_M-pyrifera_M_contig80905.18922.1 ID=mRNA_M-pyrifera_M_contig80905.18922.1|Name=mRNA_M-pyrifera_M_contig80905.18922.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig80905:586..939+ (Macrocystis pyrifera P11B4 male)
TATGTTCCAAGGGATGTGATTGAGCAACAATTGCGCGACAATGTTGCATC
AATGGGTGCTTTAGGTTCAGTCAATCGCCCGATGACGACGACCATTCTGC
ATGGATTCGGCGGCACAGGCAAAACGCAGCTAGCGGCGCATTATTTTTAC
CGCAGTGAAAAGCGCTACCCGCGTAAGTATTGGTTGCAGGCCAGCAGCCT
GGATACCTTAAAGGGCCAAATGCGAAATTTAGCATTAGGATTGCAGCTTG
TCACTGAGGATGAAAAAATAGGCCCAACTGAGGTCTTAAGTCGTATTAAG
CGATATTTTGCAGGGCAAGAGGGTGCAAGTTTATTCGTTTTTGATGATGT
AGACTATGTTCCAAGGGATGTGATTGAGCAACAATTGCGCGACAATGTTG
CATCAATGGGTGCTTTAGGTTCAGTCAATCGCCCGATGACGACGACCATT
CTGCATGGATTCGGCGGCACAGGCAAAACGCAGCTAGCGGCGCATTATTT
TTACCGCAGTGAAAAGCGCTACCCGCGTAAGTATTGGTTGCAGGCCAGCA
GCCTGGATACCTTAAAGGGCCAAATGCGAAATTTAGCATTAGGATTGCAG
CTTGTCACTGAGGATGAAAAAATAGGCCCAACTGAGGTCTTAAGTCGTAT
TAAGCGATATTTTGCAGGGCAAGAGGGTGCAAGTTTATTCGTTTTTGATG
ATGTAGAC
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