mRNA_M-pyrifera_M_contig80846.18914.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80846.18914.1
Unique NamemRNA_M-pyrifera_M_contig80846.18914.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80846.18914.1 vs. uniprot
Match: A0A329SJB7_9STRA (DUF667 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SJB7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.050e-18
Identity = 66/202 (32.67%), Postives = 101/202 (50.00%), Query Frame = 1 
Query:    4 SQRHFV-GHDGVVRLVALDPRGGALLASVSSPSATXXXXXXXRANASPRIRLWSYYAGRCLADLAAPERGCFALSFSHDGSE---LAVAGADRRGNPCILVWDVSNALEQARADSASKPEPPFAPLRPPLLACPIVAHQSSDFSLVRVSFSPFER---HKLVACGRENVRFLRVAR--GHLPSTSVVLNEHARGNVFLDVAF 582
            ++ +F+ GH   +  +A+   GG LLAS   P+ +              IRLW   +  C+  + A  +G  AL FS        L + G D      I +WD ++ L++ + D  S                 ++A Q+SDF + R+SFSP+E+   + LV+CGREN+R+ RV    GHL    V+LNE++RGNVF D+ F
Sbjct:  429 TREYFLYGHCASISALAVTNDGG-LLASAEVPTESKQNG----------IRLWDLSSRECITVIKAQPKGVHALCFSPLSKSRLLLCIVGRDECFRTQIFIWDCTS-LQREKQDPLSA-------------TVSLMARQTSDFPIDRISFSPYEQRDQYHLVSCGRENIRYWRVNSNTGHLTGCPVILNEYSRGNVFTDIGF 605
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BLAST of mRNA_M-pyrifera_M_contig80846.18914.1 vs. uniprot
Match: W2P5H4_PHYPR (DUF667 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2P5H4_PHYPR)

HSP 1 Score: 90.5 bits (223), Expect = 1.680e-17
Identity = 67/202 (33.17%), Postives = 98/202 (48.51%), Query Frame = 1 
Query:    4 SQRHFV-GHDGVVRLVALDPRGGALLASVSSPSATXXXXXXXRANASPRIRLWSYYAGRCLADLAAPERGCFALSFSHDGSE---LAVAGADRRGNPCILVWDVSNALEQARADSASKPEPPFAPLRPPLLACPIVAHQSSDFSLVRVSFSPFERHK---LVACGRENVRFLRVA--RGHLPSTSVVLNEHARGNVFLDVAF 582
            ++ +F+ GH   +  +A+    G+LLAS   P  +              IRLW+     C+  + A  +G  AL FS        L V G D      I +WD S+ L++ + D  S              A  ++A Q+SDF + R+SFSP+E      LV+CGREN+R+ RV    GHL    V+LNE++RG VF D+ F
Sbjct:  809 TREYFLYGHCAAICALAVT-NDGSLLASAEVPKESNQNG----------IRLWNLTNHDCITVIKAQPKGVHALCFSPLSKSRLLLCVVGRDECFRTQIFIWDCSS-LQRGKLDPLST-------------AVSLMARQTSDFPIDRMSFSPYEHRDQFHLVSCGRENIRYWRVNPNTGHLTGCPVILNEYSRGTVFTDIGF 985
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BLAST of mRNA_M-pyrifera_M_contig80846.18914.1 vs. uniprot
Match: A0A482RJ81_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RJ81_9ARCH)

HSP 1 Score: 83.6 bits (205), Expect = 2.300e-15
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:  304 SNALEQARADSASKPEPPFAPLRP------PLLACPIVAHQSSDFSLVRVSFSPFERHKLVACGRENVRFLRVARGHLPSTSVVLNEHARGNVF 567
            ++AL +  A+ +    PP A   P      PL   P+VAHQ SDF++ R+ FSP ER +L++ G EN+RF RV+R HLP TS+VLN++ARG  F
Sbjct:  306 TDALHKVMAELSMGDTPPPAESAPATVSSLPLHTLPMVAHQVSDFAITRIRFSPAERGRLMSVGHENIRFWRVSRSHLPGTSIVLNDYARGVEF 399
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BLAST of mRNA_M-pyrifera_M_contig80846.18914.1 vs. uniprot
Match: A0A813UTG0_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813UTG0_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 6.480e-7
Identity = 47/190 (24.74%), Postives = 81/190 (42.63%), Query Frame = 1 
Query:    1 RSQRHFVGHDGVVRLVALDPRGGALLASVSSPSATXXXXXXXRANASPRIRLWSYYAGRCLADLAAPERGCFALSFSHDGSELAVAG-----ADRRGNP--CILVWDVSNALEQARADSASKPEPPFAPLRPPLLACPIVAHQSSDFSLVRVSFSPFERHKLVACGRENVRFLRVARG-HLPSTSVVLNE 546
            R Q  F+GH   V  +AL      LLA+V   S                +R+W   + RC+A +  P     A+ F+ D + L V G      D++ +    + V+D SN L+                         +++  S+D ++ R+ F P++  K V CGR+N++F R+     L S S+ +++
Sbjct:  935 RQQYFFIGHTDKVTSIALKVNS-TLLATVQKGSNAI-------------LRIWKLESRRCIAVVKVPAIKLCAVDFALDSNSLVVVGHSGVLEDKQNSSKTIVCVYDTSNCLKGT---------------------INLISKTSTDSTIERIKFVPYDSSKFVTCGRDNIKFWRLKNSVELKSMSISVDD 1089
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BLAST of mRNA_M-pyrifera_M_contig80846.18914.1 vs. uniprot
Match: A0A6H5JNU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNU2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.950e-6
Identity = 49/142 (34.51%), Postives = 64/142 (45.07%), Query Frame = 1 
Query:  220 LSFSHDGSELAVAGAD----RRGNPCILVWDVSNALEQARADSASKPEPPFAPLRPPL-------LACPIVAHQ---------SSDFSLVRVSFSPFER-HKLVACGRENVRFLRVARGHLPSTSVVLNEHARGNVFLDVAF 582
            L  SH G  LA A  D      G+  + +W+ ++   ++ ADS S         R PL        A   +AH+         S D  L  V      R  +LV+CGRENVRF RV R HLP+   VLN+ AR     D+AF
Sbjct:  730 LQLSHAGHLLASAQGDPLGAAGGHGIVRLWNATSLGRRSPADSGSARA--AGGRRTPLREGGGGKCAAHFIAHRWGVSSMCFSSDDRLLCTVGGDDHRRTQRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 869
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80846.18914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A329SJB7_9STRA1.050e-1832.67DUF667 domain-containing protein n=1 Tax=Phytophth... [more]
W2P5H4_PHYPR1.680e-1733.17DUF667 domain-containing protein n=9 Tax=Phytophth... [more]
A0A482RJ81_9ARCH2.300e-1546.81Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A813UTG0_9BILA6.480e-724.74Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A6H5JNU2_9PHAE3.950e-634.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80846contigM-pyrifera_M_contig80846:34..708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog112098.XP_008605923.1
Preferred nameWDR90
KEGG koko:K20478
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule severing
EggNOG OGsKOG0267@1,KOG0267@2759,KOG3213@1,KOG3213@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size609
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.2610714-CDS-M-pyrifera_M_contig80846:33..2601622816713.2610714-CDS-M-pyrifera_M_contig80846:33..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80846 34..260 -
1692278135.4243603-CDS-M-pyrifera_M_contig80846:33..2601692278135.4243603-CDS-M-pyrifera_M_contig80846:33..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80846 34..260 -
1622816713.2716694-CDS-M-pyrifera_M_contig80846:326..7081622816713.2716694-CDS-M-pyrifera_M_contig80846:326..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80846 327..708 -
1692278135.437441-CDS-M-pyrifera_M_contig80846:326..7081692278135.437441-CDS-M-pyrifera_M_contig80846:326..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80846 327..708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80846.18914.1prot_M-pyrifera_M_contig80846.18914.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80846 34..708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80846.18914.1

>prot_M-pyrifera_M_contig80846.18914.1 ID=prot_M-pyrifera_M_contig80846.18914.1|Name=mRNA_M-pyrifera_M_contig80846.18914.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=203bp
RSQRHFVGHDGVVRLVALDPRGGALLASVSSPSATTATTTTTRANASPRI
RLWSYYAGRCLADLAAPERGCFALSFSHDGSELAVAGADRRGNPCILVWD
VSNALEQARADSASKPEPPFAPLRPPLLACPIVAHQSSDFSLVRVSFSPF
ERHKLVACGRENVRFLRVARGHLPSTSVVLNEHARGNVFLDVAFYEHATP
TPT
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mRNA from alignment at M-pyrifera_M_contig80846:34..708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80846.18914.1 ID=mRNA_M-pyrifera_M_contig80846.18914.1|Name=mRNA_M-pyrifera_M_contig80846.18914.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=675bp|location=Sequence derived from alignment at M-pyrifera_M_contig80846:34..708- (Macrocystis pyrifera P11B4 male)
CGATCACAACGCCACTTTGTTGGACATGATGGTGTGGTTCGTCTTGTTGC
ACTTGATCCACGTGGTGGCGCATTGCTGGCGAGTGTTTCTTCACCCTCAG
CAACAACAGCAACAACAACAACAACAAGAGCAAACGCTAGTCCAAGAATT
CGACTCTGGAGTTATTACGCAGGTCGTTGTCTTGCTGACCTCGCTGCACC
AGAACGTGGTTGTTTTGCACTCTCCTTTTCCCATGATGGATCTGAACTTG
CAGTGGCAGGAGCGGATCGACGTGGAAACCCGTGTATCTTGGTGTGGGAT
GTGAGTAATGCCTTGGAACAAGCTCGTGCAGATTCTGCATCCAAACCAGA
ACCACCATTTGCACCACTTCGTCCACCGCTTCGTCGACCTGGCAGTGAAG
CAGGTGTGCGTGGTTCTATGTTAGGATTAGGTCCAAATGACTTGGGAGTT
GCATGTCCTATTGTTGCACATCAATCATCAGACTTCTCTCTCGTCAGGGT
ATCGTTTTCTCCATTTGAACGTCACAAGCTTGTAGCATGTGGACGGGAGA
ATGTACGATTCTTACGAGTTGCACGTGGACATCTTCCAAGCACATCAGTG
GTTCTCAATGAACATGCAAGGGGGAATGTGTTCTTGGATGTTGCATTTTA
TGAACATGCAACACCCACCCCCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80846:34..708-

>mRNA_M-pyrifera_M_contig80846.18914.1 ID=mRNA_M-pyrifera_M_contig80846.18914.1|Name=mRNA_M-pyrifera_M_contig80846.18914.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig80846:34..708- (Macrocystis pyrifera P11B4 male)
CGATCACAACGCCACTTTGTTGGACATGATGGTGTGGTTCGTCTTGTTGC
ACTTGATCCACGTGGTGGCGCATTGCTGGCGAGTGTTTCTTCACCCTCAG
CAACAACAGCAACAACAACAACAACAAGAGCAAACGCTAGTCCAAGAATT
CGACTCTGGAGTTATTACGCAGGTCGTTGTCTTGCTGACCTCGCTGCACC
AGAACGTGGTTGTTTTGCACTCTCCTTTTCCCATGATGGATCTGAACTTG
CAGTGGCAGGAGCGGATCGACGTGGAAACCCGTGTATCTTGGTGTGGGAT
GTGAGTAATGCCTTGGAACAAGCTCGTGCAGATTCTGCATCCAAACCAGA
ACCACCATTTGCACCACTTCGTCCACCGCTTCCGATCACAACGCCACTTT
GTTGGACATGATGGTGTGGTTCGTCTTGTTGCACTTGATCCACGTGGTGG
CGCATTGCTGGCGAGTGTTTCTTCACCCTCAGCAACAACAGCAACAACAA
CAACAACAAGAGCAAACGCTAGTCCAAGAATTCGACTCTGGAGTTATTAC
GCAGGTCGTTGTCTTGCTGACCTCGCTGCACCAGAACGTGGTTGTTTTGC
ACTCTCCTTTTCCCATGATGGATCTGAACTTGCAGTGGCAGGAGCGGATC
GACGTGGAAACCCGTGTATCTTGGTGTGGGATGTGAGTAATGCCTTGGAA
CAAGCTCGTGCAGATTCTGCATCCAAACCAGAACCACCATTTGCACCACT
TCGTCCACCGCTTCTTGCATGTCCTATTGTTGCACATCAATCATCAGACT
TCTCTCTCGTCAGGGTATCGTTTTCTCCATTTGAACGTCACAAGCTTGTA
GCATGTGGACGGGAGAATGTACGATTCTTACGAGTTGCACGTGGACATCT
TCCAAGCACATCAGTGGTTCTCAATGAACATGCAAGGGGGAATGTGTTCT
TGGATGTTGCATTTTATGAACATGCAACACCCACCCCCACCTTGCATGTC
CTATTGTTGCACATCAATCATCAGACTTCTCTCTCGTCAGGGTATCGTTT
TCTCCATTTGAACGTCACAAGCTTGTAGCATGTGGACGGGAGAATGTACG
ATTCTTACGAGTTGCACGTGGACATCTTCCAAGCACATCAGTGGTTCTCA
ATGAACATGCAAGGGGGAATGTGTTCTTGGATGTTGCATTTTATGAACAT
GCAACACCCACCCCCACC
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