mRNA_M-pyrifera_M_contig80834.18910.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80834.18910.1
Unique NamemRNA_M-pyrifera_M_contig80834.18910.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80834.18910.1 vs. uniprot
Match: A0A6P4ZNH9_BRABE (interferon-induced protein 44-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZNH9_BRABE)

HSP 1 Score: 66.2 bits (160), Expect = 5.770e-9
Identity = 67/257 (26.07%), Postives = 116/257 (45.14%), Query Frame = 1 
Query:   10 VLYKWSTGNKSNAGLHASIDNQGATLHVIVTPEG-MFGGFASRPWSSTGGYQADTNSFVWRYRDGVL---RKFAATGNANHMHFS----GPIHFGDAHAIYLSLDNLPASHVRPCPARFS---GFTDASDLNPATAPF-----TVVDYLVFQVSDEDEY---VDRVNI--GRDWT----ASGRDELLRQAKAFQAYAPSLPNSEEYALNVLTIGERGSGKSSFLNAVVTTLRQRLTKTLHAAPSPGDVTTKQRNISL 705
            +L+K ST   ++A  H   +N+G T+ V     G +FGG+AS PW+S G Y    +SF++R  +       K  A     +  +     GP+ FG  H   +      A++     A  S   G+T  + +      F     + +D  V+ +   +E    +++  +  G++W     +    E L+Q  A   Y P + +S    +NVL +G+ GSGKSSF N + +  + R++    A   P  +TT+ R   +
Sbjct:   28 LLFKASTQGYNSATFHQLCNNKGPTVTVAYNAIGWVFGGYASEPWTSRGSYVQAPDSFLFRLSNANKFDPLKIPANQYVQNCLYDLQDRGPV-FGGGHDFQVFTGTYQANNGNFINANGSSNIGYTYGNGMGHNVNTFCGGNLSYLDVEVYSIGKREEKEVPIEKKMLQEGKEWRKVQWSDEERERLKQQVA--GYKPQVCSSVSQ-VNVLLVGQVGSGKSSFFNTINSIYKGRVSSQAMAGSQPHSLTTRYRTYEV 280
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BLAST of mRNA_M-pyrifera_M_contig80834.18910.1 vs. uniprot
Match: A0A8J9YXL7_BRALA (IFI44L protein n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A8J9YXL7_BRALA)

HSP 1 Score: 66.2 bits (160), Expect = 5.780e-9
Identity = 69/259 (26.64%), Postives = 110/259 (42.47%), Query Frame = 1 
Query:   10 VLYKWSTGNKSNAGLHASIDNQGATLHVIVTPEG-MFGGFASRPWSSTGGYQADTNSFVWRYRDGVL---RKFAATGNANHMHFS----GPIHFGDAHAIYLSLDNLPASHVRPCPARFS---GFTDASDLNPATAPF-----TVVDYLVFQVSDEDEYVDRVNI-------GRDWT----ASGRDELLRQAKAFQAYAPSLPNSEEYALNVLTIGERGSGKSSFLNAVVTTLRQRLTKTLHAAPSPGDVTTKQRNISL 705
            +L+K ST   + A  H   +N+G T+ V     G +FGG+AS  W+S GG+    +SF++R  +       KF + G + H  +     GP  FG  H          A++     A  S   G T  + +      F       +D  V+ +   +   D   I       G++W     +    E L+Q  A     P L  S+   +NVL +G+ GSGKSSF N + +  + R++    A   P  +TT+ R   +
Sbjct:   28 LLFKASTQGYNPATFHQLCNNKGPTVTVAYNATGWVFGGYASESWTSRGGWVQAPDSFLFRLSNANKFDPLKFPSDGTSGHCQYDLQNYGPT-FGGGHDFAAFTGTYAANNGNFVAAGGSSNLGNTYGAGMGHNANSFCGNNLNYLDVEVYSIGKREAKEDGDPIEKRMMQEGKEWRKVQWSDEERERLKQQVAGYKPRPCLSLSQ---VNVLLVGQVGSGKSSFFNTINSIYKGRVSSQAMAGSQPHSLTTRYRTYEV 282
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BLAST of mRNA_M-pyrifera_M_contig80834.18910.1 vs. uniprot
Match: A0A815BXV0_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815BXV0_ADIRI)

HSP 1 Score: 56.6 bits (135), Expect = 8.730e-6
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    7 RVLYKWSTGNKSNAGLHASIDNQGATLHVIVTPEG-MFGGFASRPWSSTGGYQADTNSFVW 186
            ++LYK +    +    H   DNQG T+ ++ +    +FGG+AS PWSS GGY+ DTN+F++
Sbjct:  220 QLLYKATRDGFAANAFHTRCDNQGPTITIVQSSNNYLFGGYASTPWSSDGGYKEDTNAFLF 280
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80834.18910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6P4ZNH9_BRABE5.770e-926.07interferon-induced protein 44-like n=1 Tax=Branchi... [more]
A0A8J9YXL7_BRALA5.780e-926.64IFI44L protein n=2 Tax=Branchiostoma TaxID=7737 Re... [more]
A0A815BXV0_ADIRI8.730e-640.98Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80834contigM-pyrifera_M_contig80834:186..893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score83.2
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog8081.XP_008405096.1
Preferred nameIFI44L
Hectar predicted targeting categoryother localisation
GOsGO:0002252,GO:0002376,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0043207,GO:0050896,GO:0051607,GO:0051704,GO:0051707,GO:0098542
EggNOG free text desc.Interferon-induced protein 44-like
EggNOG OGs2CMEP@1,2QQ57@2759,39SKQ@33154,3BC7T@33208,3CYD0@33213,48AS9@7711,496DZ@7742,4A6QS@7898
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons1
Model size708
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.097293-CDS-M-pyrifera_M_contig80834:185..8931622816713.097293-CDS-M-pyrifera_M_contig80834:185..893Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80834 186..893 +
1692278135.3667934-CDS-M-pyrifera_M_contig80834:185..8931692278135.3667934-CDS-M-pyrifera_M_contig80834:185..893Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80834 186..893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80834.18910.1prot_M-pyrifera_M_contig80834.18910.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80834 186..893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80834.18910.1

>prot_M-pyrifera_M_contig80834.18910.1 ID=prot_M-pyrifera_M_contig80834.18910.1|Name=mRNA_M-pyrifera_M_contig80834.18910.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=236bp
EVRVLYKWSTGNKSNAGLHASIDNQGATLHVIVTPEGMFGGFASRPWSST
GGYQADTNSFVWRYRDGVLRKFAATGNANHMHFSGPIHFGDAHAIYLSLD
NLPASHVRPCPARFSGFTDASDLNPATAPFTVVDYLVFQVSDEDEYVDRV
NIGRDWTASGRDELLRQAKAFQAYAPSLPNSEEYALNVLTIGERGSGKSS
FLNAVVTTLRQRLTKTLHAAPSPGDVTTKQRNISLE
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mRNA from alignment at M-pyrifera_M_contig80834:186..893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80834.18910.1 ID=mRNA_M-pyrifera_M_contig80834.18910.1|Name=mRNA_M-pyrifera_M_contig80834.18910.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig80834:186..893+ (Macrocystis pyrifera P11B4 male)
GAAGTTCGTGTACTCTACAAGTGGAGCACTGGCAACAAGAGTAACGCCGG
TTTGCATGCCAGCATCGATAACCAAGGAGCAACATTGCATGTCATCGTCA
CTCCGGAGGGCATGTTTGGCGGCTTCGCTTCGAGGCCCTGGAGCAGCACT
GGAGGCTACCAAGCAGACACCAACAGCTTTGTCTGGAGGTACAGGGATGG
AGTACTGCGAAAGTTTGCTGCCACTGGCAACGCCAATCACATGCACTTCA
GCGGTCCCATTCATTTCGGCGACGCGCACGCCATCTACCTAAGTCTGGAC
AATCTGCCTGCATCGCACGTAAGGCCGTGCCCCGCCAGATTTTCTGGCTT
CACTGATGCCAGCGACCTCAACCCTGCCACCGCTCCTTTCACCGTCGTGG
ACTATTTGGTCTTCCAGGTCTCTGACGAGGACGAGTATGTGGACCGCGTC
AACATTGGGCGTGACTGGACCGCCAGCGGCAGAGATGAGCTCTTGAGGCA
GGCGAAGGCCTTCCAGGCTTACGCGCCATCGCTTCCCAACAGCGAAGAGT
ACGCACTCAACGTTCTCACCATTGGGGAGCGAGGCAGCGGCAAGAGCAGC
TTTCTCAATGCCGTTGTCACGACGCTGCGGCAGCGCCTCACCAAAACTCT
ACATGCGGCGCCTTCACCAGGCGACGTGACGACGAAGCAGCGTAATATCA
GCCTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80834:186..893+

>mRNA_M-pyrifera_M_contig80834.18910.1 ID=mRNA_M-pyrifera_M_contig80834.18910.1|Name=mRNA_M-pyrifera_M_contig80834.18910.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1416bp|location=Sequence derived from alignment at M-pyrifera_M_contig80834:186..893+ (Macrocystis pyrifera P11B4 male)
GAAGTTCGTGTACTCTACAAGTGGAGCACTGGCAACAAGAGTAACGCCGG
TTTGCATGCCAGCATCGATAACCAAGGAGCAACATTGCATGTCATCGTCA
CTCCGGAGGGCATGTTTGGCGGCTTCGCTTCGAGGCCCTGGAGCAGCACT
GGAGGCTACCAAGCAGACACCAACAGCTTTGTCTGGAGGTACAGGGATGG
AGTACTGCGAAAGTTTGCTGCCACTGGCAACGCCAATCACATGCACTTCA
GCGGTCCCATTCATTTCGGCGACGCGCACGCCATCTACCTAAGTCTGGAC
AATCTGCCTGCATCGCACGTAAGGCCGTGCCCCGCCAGATTTTCTGGCTT
CACTGATGCCAGCGACCTCAACCCTGCCACCGCTCCTTTCACCGTCGTGG
ACTATTTGGTCTTCCAGGTCTCTGACGAGGACGAGTATGTGGACCGCGTC
AACATTGGGCGTGACTGGACCGCCAGCGGCAGAGATGAGCTCTTGAGGCA
GGCGAAGGCCTTCCAGGCTTACGCGCCATCGCTTCCCAACAGCGAAGAGT
ACGCACTCAACGTTCTCACCATTGGGGAGCGAGGCAGCGGCAAGAGCAGC
TTTCTCAATGCCGTTGTCACGACGCTGCGGCAGCGCCTCACCAAAACTCT
ACATGCGGCGCCTTCACCAGGCGACGTGACGACGAAGCAGCGTAATATCA
GCCTCGAGGAAGTTCGTGTACTCTACAAGTGGAGCACTGGCAACAAGAGT
AACGCCGGTTTGCATGCCAGCATCGATAACCAAGGAGCAACATTGCATGT
CATCGTCACTCCGGAGGGCATGTTTGGCGGCTTCGCTTCGAGGCCCTGGA
GCAGCACTGGAGGCTACCAAGCAGACACCAACAGCTTTGTCTGGAGGTAC
AGGGATGGAGTACTGCGAAAGTTTGCTGCCACTGGCAACGCCAATCACAT
GCACTTCAGCGGTCCCATTCATTTCGGCGACGCGCACGCCATCTACCTAA
GTCTGGACAATCTGCCTGCATCGCACGTAAGGCCGTGCCCCGCCAGATTT
TCTGGCTTCACTGATGCCAGCGACCTCAACCCTGCCACCGCTCCTTTCAC
CGTCGTGGACTATTTGGTCTTCCAGGTCTCTGACGAGGACGAGTATGTGG
ACCGCGTCAACATTGGGCGTGACTGGACCGCCAGCGGCAGAGATGAGCTC
TTGAGGCAGGCGAAGGCCTTCCAGGCTTACGCGCCATCGCTTCCCAACAG
CGAAGAGTACGCACTCAACGTTCTCACCATTGGGGAGCGAGGCAGCGGCA
AGAGCAGCTTTCTCAATGCCGTTGTCACGACGCTGCGGCAGCGCCTCACC
AAAACTCTACATGCGGCGCCTTCACCAGGCGACGTGACGACGAAGCAGCG
TAATATCAGCCTCGAG
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