mRNA_M-pyrifera_M_contig8083.18909.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8083.18909.1
Unique NamemRNA_M-pyrifera_M_contig8083.18909.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8083.18909.1 vs. uniprot
Match: D8LSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI3_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 6.280e-91
Identity = 125/153 (81.70%), Postives = 139/153 (90.85%), Query Frame = 1 
Query:    1 GRDKYSLVAVGARGDMPGEINSKPCVESRTTEWRHLGFPEFYANISAGHFVVTAAAGHDYEFDRATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSLVANDDLCLNLEAAYDLSPAEYDEMELEARDCKLEMWRQTRQTIAGMGSGWTLD 459
            GRD Y LVAVGARGD+P ++++  CVE RTTEWRHL +PEFYANISAGHFVVTAAAGH YE+D+ATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHS+VANDDLC+NL+ AYDL+  EYDEMELEARDCKLEMWR  R+T+AGM SGWTLD
Sbjct:   22 GRDNYQLVAVGARGDLPDDVSAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHGYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCVNLQTAYDLTREEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 174
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BLAST of mRNA_M-pyrifera_M_contig8083.18909.1 vs. uniprot
Match: A0A6H5KJA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA8_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 2.710e-89
Identity = 125/153 (81.70%), Postives = 137/153 (89.54%), Query Frame = 1 
Query:    1 GRDKYSLVAVGARGDMPGEINSKPCVESRTTEWRHLGFPEFYANISAGHFVVTAAAGHDYEFDRATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSLVANDDLCLNLEAAYDLSPAEYDEMELEARDCKLEMWRQTRQTIAGMGSGWTLD 459
            GRD Y LVAVGARGD+P ++    CVE RTTEWRHL +PEFYANISA HFVVTAAAGHDYE+D+ATSTVPTALLLERPLV+SSTLLDAYPCLRKSRVHS+VANDDLCLNL+ AYDL+  EYDEMELEARDCKLEMWR  R+T+AGM SGWTLD
Sbjct:  113 GRDNYQLVAVGARGDLPDDVRRMQCVEQRTTEWRHLEYPEFYANISAAHFVVTAAAGHDYEYDKATSTVPTALLLERPLVISSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 265
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BLAST of mRNA_M-pyrifera_M_contig8083.18909.1 vs. uniprot
Match: A0A482SI13_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI13_9ARCH)

HSP 1 Score: 69.3 bits (168), Expect = 5.910e-12
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:   91 TEWRHLGFPEFYANISAGHFVVTAA-AGHDYEFDRATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSLVANDDLCLNLEAAYDLSPAEYDEMELEARDCK 396
            T  R +  P FY  I+   F+VT A   ++Y   RA+S++PTA++ E PLV+++ LL+ Y CL    +H  VA+ D C  L+ A  L+  E   M  E R CK
Sbjct:   12 TVLRAVAHPYFYGAIARADFLVTFANPAYEYNITRASSSIPTAVMTEVPLVLTTDLLNKYDCLYGGSIHRRVADTDDCKALKNAIQLTDQERKTMREEIRRCK 114
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BLAST of mRNA_M-pyrifera_M_contig8083.18909.1 vs. uniprot
Match: A0A482SHX3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHX3_9ARCH)

HSP 1 Score: 62.0 bits (149), Expect = 2.400e-8
Identity = 35/142 (24.65%), Postives = 66/142 (46.48%), Query Frame = 1 
Query:    4 RDKYSLVAVGARGDMPGEINSKPCVESRTTEWRHLGFPEFYANISAGHFVVTAAAGHDYEFDRATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSLVANDDLCLNLEAAYDLSPAEYDEMELEARDCKLEMWRQTRQTI 429
            R    LV +G    +   +     + + TT  +   +  F+ N+S+  + +  +    YE  R TS++PT+L+   P+++ + LL  Y CLR   VH   +  D C +++A   L      +M  E   C  ++  ++R T+
Sbjct:  241 RHDIELVLIGKVATLGANLTIPLKLSNITTVVKWPDYLGFFRNVSSADYAILFSKFDFYEHGRITSSIPTSLVSNLPIILPNKLLSDYACLRNQYVHRATSMADDCSSVKAVLSLRHERQQQMRNEVAFCVKQLLIESRATL 382
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8083.18909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSI3_ECTSI6.280e-9181.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJA8_9PHAE2.710e-8981.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SI13_9ARCH5.910e-1238.83Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A482SHX3_9ARCH2.400e-824.65Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8083contigM-pyrifera_M_contig8083:7668..12170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_001750.1
Exons5
Model size462
Cds size462
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8083.18909.1prot_M-pyrifera_M_contig8083.18909.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8083 7668..12170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.0088797-CDS-M-pyrifera_M_contig8083:7667..77601622816713.0088797-CDS-M-pyrifera_M_contig8083:7667..7760Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 7668..7760 -
1692278135.3106904-CDS-M-pyrifera_M_contig8083:7667..77601692278135.3106904-CDS-M-pyrifera_M_contig8083:7667..7760Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 7668..7760 -
1622816713.0203154-CDS-M-pyrifera_M_contig8083:8892..89611622816713.0203154-CDS-M-pyrifera_M_contig8083:8892..8961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 8893..8961 -
1692278135.3214161-CDS-M-pyrifera_M_contig8083:8892..89611692278135.3214161-CDS-M-pyrifera_M_contig8083:8892..8961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 8893..8961 -
1622816713.0336752-CDS-M-pyrifera_M_contig8083:9835..99311622816713.0336752-CDS-M-pyrifera_M_contig8083:9835..9931Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 9836..9931 -
1692278135.3306694-CDS-M-pyrifera_M_contig8083:9835..99311692278135.3306694-CDS-M-pyrifera_M_contig8083:9835..9931Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 9836..9931 -
1622816713.0447958-CDS-M-pyrifera_M_contig8083:11273..113671622816713.0447958-CDS-M-pyrifera_M_contig8083:11273..11367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 11274..11367 -
1692278135.3418033-CDS-M-pyrifera_M_contig8083:11273..113671692278135.3418033-CDS-M-pyrifera_M_contig8083:11273..11367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 11274..11367 -
1622816713.0587087-CDS-M-pyrifera_M_contig8083:12060..121701622816713.0587087-CDS-M-pyrifera_M_contig8083:12060..12170Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 12061..12170 -
1692278135.3502767-CDS-M-pyrifera_M_contig8083:12060..121701692278135.3502767-CDS-M-pyrifera_M_contig8083:12060..12170Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 12061..12170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8083.18909.1

>prot_M-pyrifera_M_contig8083.18909.1 ID=prot_M-pyrifera_M_contig8083.18909.1|Name=mRNA_M-pyrifera_M_contig8083.18909.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
GRDKYSLVAVGARGDMPGEINSKPCVESRTTEWRHLGFPEFYANISAGHF
VVTAAAGHDYEFDRATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSL
VANDDLCLNLEAAYDLSPAEYDEMELEARDCKLEMWRQTRQTIAGMGSGW
TLD*
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mRNA from alignment at M-pyrifera_M_contig8083:7668..12170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8083.18909.1 ID=mRNA_M-pyrifera_M_contig8083.18909.1|Name=mRNA_M-pyrifera_M_contig8083.18909.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4503bp|location=Sequence derived from alignment at M-pyrifera_M_contig8083:7668..12170- (Macrocystis pyrifera P11B4 male)
GGCCGAGACAAGTACTCGCTGGTGGCCGTGGGCGCCCGAGGAGACATGCC
CGGCGAGATAAACTCCAAGCCTTGTGTAGAGAGCCGCACAACGGAGTGGC
GACACCTAGGGTGAGAGGATGGGAGGAGGGACGGGGGTTGTCGGCAAGGG
GGAGAGGTTGGAGGGGGTGTGCTCATGCCATGCATGGCCGTAGTCGTACG
GCCATAGACCCTCGCATCCCTACAATCCCGGGATGGAGCAGGTTGGGGGG
GGAGGGGGGGGGAGGGGGGGGGAGGGGCTACCTTGAAGATCATTGTATTA
TAGTCCAGTGTATGCTTTGTTGCTCGGCAAACTCTGGGAATTGTCTCCAC
TTGAAATGTGGATAGAACCTAGGATGCATTTGGTATCATAGTCAGCTCCG
TCTTTCTATCACCACTGCTGTTGTTGCCAGAAAGTGTTTGTTCGGGTCCG
AGCGCTGAATCGCGCTTGACGGTAGTGCGCTCCCGGGCTGCTGCTCTTGT
CCTGTCATGTCCCGCGCTACCAATACCCAGATGGGGATAATGCTAATTAC
TCAGGCAGCCACGATATCATCACAAGACCTTTCCCGCACCGTGCCAAACG
TGCTCCGGCTTTGACCAGCCCCCTCCACATGTCGTGCATTGTGGTTTAGC
ACAGGCCGAGCGAGATTCGCAGCAGTAGCTTACCTCCACGTATGTTGGAG
AGTTTTGTACCGGTACCTCACGAGATGGGGCGCCGTGCTGACATTCGCGT
GCACCCCACCCCCCCCGCCGCGAACACCTCGGGATGCAACTCCATCCCGG
AAGGTTCCCTGAATTTTACGCCAACATCAGCGCGGGGCATTTTGTTGTGA
CGGCGGCGGCGGGCCACGACTACGAGTTTGACAGGGCAACCTCTACGGTG
CGTGCCTTTCCCTGTTGCTCGTTATGAATGCTCGTATATACGCAGCGCTG
GGTTCTGTTTTTGTTTTTGCTAACAAGCGAAAGAAGGGTTTGCCCTCGAC
CCTTGTATATGGGACGCCACAGGGGAAATTTGACGATGAAAATAAAGTAT
TACGGGGGACCAAAGTAAATGGGACCAAATATTATAAGTAAAAATAGGGA
ATATATAGGTTTTTGTGTTTATCGTAGGTCCCATTTACTATGGTCCTCCG
TAGTAGTGCGATTACAGCGACGTTCACTGCTAGATTTGGGTGCTAAACGC
TAATGATTTGTCCGAGTTTCAGTGCAAGGAGTCGGGTATACAACACGGCG
CACGGGGCGCGGCGCAACATGACCCCTAGCTGTACTGCTGGGGAGCTCCC
GCTGCAGGTAGACGGCGTTTTTGATAAAGCAAAAAAACGCCGAAGTTTCG
TTGTCTTGGTTGTTTCCTCGGGCTCCGAGAAGGGTTACAGTTTACCTTTC
TGCTAAAAAACTACGGCATGAACAGCTCAAATCTATTTTGGAGTAGATTG
TCCCCCCAACCGTGGGTGCGGGTCTGACGGTGGCTGAGATGATTGCGAAG
GTGGATGCGGTGTTCGCCGACGACGCAGGCAAGTCGTGATGGTCCTCGGA
GATGCTTGCGCACAGGAGCGTGTTCTATTGGTCGTGCTCGGGAGCATCGT
CCTGGTGCGCGTACGCCGACCGGCGGTTTCGCGGGAGTCCCGGGCCGTTC
GAGTTGCTTTATCTCGTCGCCGTATACGACAGTGGGCGTATGTATTAATC
CCGCTTGGTCTTCACATTCAAGTACAAACGACCGTTATATTTTCGTCCAG
AGTGGGGTACAACTTAGCCCCGCGTGGACAAAAAAAGGTTGAACTACTGT
ATGTCCTCGACCTTACACTATATCACTGCCCCCGAGGCCATAGTCGGTAC
CATCAGCCCTAGAGGTTGAGGAATGGGCTAGGAACTTCGTCCCACTTTGA
ATGCAAGAAAGAGAGCGCTATGGGTCGAAGTCACAGGCAGCAACGTCCCG
ATCTCTCCGATGGGTTTCCGGGTCCACGAAACGGTACTTGTCGAGGAGCT
GTTGCCAAAACCAGGCGCGTGGGTTTGGCGGGGTCACGCCCGGAGCTTCT
CGCGCCGTACCTGACAGCGGCGGGAAGGGACGGCAGGCGGCTGGCCCTCC
AGCTGTGCTTTGCGCTGGCACATGAGAAATGGGGACAGAGAACCGTGTGT
CGCGACATCCTGGTGGGTGGGTTTTTTTTAACAGAGGACCGTGTATCACG
GCATGTCTGCCGCCGCTGTCGATTTTTTTGCGCTTACAGGTTCCAACTGC
CCTGCTGCTCGAGAGGCCTCTGGTGATGTCCTCCACGCTGCTGGATGCTT
ACCCCTGCCTGAGGAAGTCTCGTGTTCACAGCTTGGTGAGTGGGCAGGGT
GTACCTGTCTGTCCCAGGCGCAAGAGAAGCTGTGGCCAGAATCGCGTTTT
GTTTATTTCTTCCCTTCTTCCCGACATCGCGTTTTCGCTAAAGGTCTTGA
CTAAGAGAGGTGGTACGCGTGTATGGAAGAAAAAATTGCCTCTAAGTTTC
ATCTAGTTTGTTTTTTTGTTCAGGTGGCGAGGATCAGGTTGACATTCCCC
CCTCCTCATCATGTACATTTTCAACCGAGAACCACTCACTAACCAATCGG
TCGAACTCACAGCTGACGTACTTTCAACCATTTTATAAACTCGATTTTCG
GATGGCGATAAATACTTCGAAAATGCGGCGGCGTACCCGAGCCATGCTCA
AGATTTGTGTCCGTTGAATCGAAAGGAGAAATGTGCGTAAGAATCACCAG
TCAGGTAATGCAAAACAATAGTACGAGACAATTGAGAATAGTCCGCTTGT
GAGGTTGGAAATTGGAGTCCAGGGGGCATCTGGTTAGAGTTTGTGGCAAC
CATGCGCACCCCTTACCGCCCACTGAGGCCCATAGAGAGAAAAAATACGA
CGGGCGCAGAAAAAAGTTCTAAGACAAGCATACATACGCTCAACTAGCCT
ACTGCGCCATCGGTACCTCGTCGCGCCTGAGAGGAAGAGAGCGCCGAATT
TCAGTGTCCTGGCGCTACGCGGCTAGTCGTCCTTGATGAGATGTGCACCA
TCTACGGTGTGCCCCCGCAACAACAGTCGAGGCTAAAGGCCGCCGTGGCT
GCGCGCAGCGGACTAGATTTTGTTTGATGCCTTGCCCTGCGACTTGCGCC
TGCTCATGCGGTTGGATTCCTCAAAACATCCTTGCGAAAACAACGATCCC
ATCGCGCAGGTGGCCAATGATGACCTTTGTCTCAACCTGGAGGCCGCGTA
CGACCTATCCCCAGCGGAGTACGATGAGGTGGGCGTTGCGTAGGCGTTGC
GTAGGCGTATACAAAAGGCCAAGCTGTGCGTGTTATCTAGTCGTCGCCTC
GACCACAACGAAAACTGTTCCATCGTATTTCGTACCAAGGTGTACGTGAA
TATGAGGTTACCATTCTCGCCACAACTTCAATTTATACGGTGCATCTGCT
TTGATAGATATGCGTCGTGTGGTCATCAGGGCACATCCCGGGTGCATACG
CATAAACGAGTCACACACGCACGCACACAGTCGGCAACTGGGCGTAGGTG
GGCGCGGGTACAGATGGGTACCCCGACTTGAAAGAGGGGCACGCTAAGAG
GACAGGACAGTTGAGAGAGGCCGAATCGGCTGTACCCGCCTACACACACT
GAAACTACACCGCTCTGGGTGGAAATGTAAGGGCCGTGTAATAGGGAAGG
CCTAGTTAAGAGAGATGTCTTAGGCCCGTACCACGCCTCTCTCTTAAATC
GGGGTACCCACTAGCGGAAAATCGGTGTTAATGCAGCAGCAAAGCGGGGA
AGAAGGTGGCGAATTGTCTTGGACTATATACCGTGTGTGCGCGAGGACGT
GCTATGACGGGAGGTGTTGTGTTGCTTTTGTGGTCTTGATTCCAGGGAAA
CCCTGAGCGGCATTCGGAGCTTTCATCTCCGGACGAAACGCTTGTTATGT
GCGACGCAGTTTACTTGCGCCGAATGCCGCAACACGCCCCCGTGTGTGGG
GCTGTCCTGCTTTACGCTTGGAGGTTCCCTCCCCGTCCGTGTGGCTGCTT
AACCATGATACGATGATGCGACGCCTCTAACGGCTTCCGCTTGTTTACCG
ACGTTGCCAAACCCATTCGCTTGGTCCTCGCCACTCGCCGCTGAAGATTC
CGGTCCGTTGGGCTGTTCAACTCCGTACGACAATGCGACGCCTCAAGCGG
CTCCTGCTCGTTGCGCTGTGTAGCTAGCGGGTTAACTTCGCTATTATAGC
CACCGAGCAAGTAACCGGCGCAAGAAACACCGGCCATCCAACTCGAAACT
AGAGATGATATTCTAATAGTACAAATTATGTCTAAAATACTGCCGTAACA
CCTTGCCGAACCCAATCGCTCGATCCTGGCTTTTTGTTGTTGTTTGTGTC
TCGGCGGCAGATGGAACTAGAAGCCCGCGATTGCAAGCTGGAGATGTGGC
GCCAGACCCGTCAAACGATCGCGGGGATGGGCTCGGGCTGGACGCTCGAT
TGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8083:7668..12170-

>mRNA_M-pyrifera_M_contig8083.18909.1 ID=mRNA_M-pyrifera_M_contig8083.18909.1|Name=mRNA_M-pyrifera_M_contig8083.18909.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig8083:7668..12170- (Macrocystis pyrifera P11B4 male)
GGCCGAGACAAGTACTCGCTGGTGGCCGTGGGCGCCCGAGGAGACATGCC
CGGCGAGATAAACTCCAAGCCTTGTGTAGAGAGCCGCACAACGGAGTGGC
GACACCTAGGGGCCGAGACAAGTACTCGCTGGTGGCCGTGGGCGCCCGAG
GAGACATGCCCGGCGAGATAAACTCCAAGCCTTGTGTAGAGAGCCGCACA
ACGGAGTGGCGACACCTAGGGTTCCCTGAATTTTACGCCAACATCAGCGC
GGGGCATTTTGTTGTGACGGCGGCGGCGGGCCACGACTACGAGTTTGACA
GGGCAACCTCTACGGTTCCCTGAATTTTACGCCAACATCAGCGCGGGGCA
TTTTGTTGTGACGGCGGCGGCGGGCCACGACTACGAGTTTGACAGGGCAA
CCTCTACGGTTCCAACTGCCCTGCTGCTCGAGAGGCCTCTGGTGATGTCC
TCCACGCTGCTGGATGCTTACCCCTGCCTGAGGAAGTCTCGTGTTCACAG
CTTGGTTCCAACTGCCCTGCTGCTCGAGAGGCCTCTGGTGATGTCCTCCA
CGCTGCTGGATGCTTACCCCTGCCTGAGGAAGTCTCGTGTTCACAGCTTG
GTGGCCAATGATGACCTTTGTCTCAACCTGGAGGCCGCGTACGACCTATC
CCCAGCGGAGTACGATGAGGTGGCCAATGATGACCTTTGTCTCAACCTGG
AGGCCGCGTACGACCTATCCCCAGCGGAGTACGATGAGATGGAACTAGAA
GCCCGCGATTGCAAGCTGGAGATGTGGCGCCAGACCCGTCAAACGATCGC
GGGGATGGGCTCGGGCTGGACGCTCGATTGAATGGAACTAGAAGCCCGCG
ATTGCAAGCTGGAGATGTGGCGCCAGACCCGTCAAACGATCGCGGGGATG
GGCTCGGGCTGGACGCTCGATTGA
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