mRNA_M-pyrifera_M_contig8083.18908.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8083.18908.1
Unique NamemRNA_M-pyrifera_M_contig8083.18908.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8083.18908.1 vs. uniprot
Match: A0A6H5KYS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.590e-21
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:   40 LPGQYVFDVVTNNLGALERVSRTAYRLVCVAEDSSSALDGRSAATILRQSCPGLSVILLLND 225
            LPG YVFDVVTNN GALERVSR+ YRLVCVA++S SALDGR  AT++R+S P L+V+LLL+D
Sbjct:    2 LPGSYVFDVVTNNFGALERVSRSKYRLVCVAQESRSALDGRKVATVIRRSFPDLTVVLLLDD 63
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BLAST of mRNA_M-pyrifera_M_contig8083.18908.1 vs. uniprot
Match: D8LSI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.380e-20
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   40 LPGQYVFDVVTNNLGALERVSRTAYRLVCVAEDSSSALDGRSAATILRQSCPGLSVILLLNDSKQR 237
            LPG YVFDVVTNN GALERVSR+ YRLVCVA++S SALDGR  A ++R+S P L+V+LLL+D   R
Sbjct:    2 LPGSYVFDVVTNNFGALERVSRSKYRLVCVAQESRSALDGRRVAMVIRRSFPDLTVVLLLDDDDVR 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8083.18908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYS1_9PHAE4.590e-2172.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI4_ECTSI2.380e-2068.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8083contigM-pyrifera_M_contig8083:1068..1699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_001760.1
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.9611745-CDS-M-pyrifera_M_contig8083:1067..12531622816712.9611745-CDS-M-pyrifera_M_contig8083:1067..1253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 1068..1253 +
1692278135.285866-CDS-M-pyrifera_M_contig8083:1067..12531692278135.285866-CDS-M-pyrifera_M_contig8083:1067..1253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 1068..1253 +
1622816712.9737124-CDS-M-pyrifera_M_contig8083:1648..16991622816712.9737124-CDS-M-pyrifera_M_contig8083:1648..1699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 1649..1699 +
1692278135.2963886-CDS-M-pyrifera_M_contig8083:1648..16991692278135.2963886-CDS-M-pyrifera_M_contig8083:1648..1699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8083 1649..1699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8083.18908.1prot_M-pyrifera_M_contig8083.18908.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8083 1068..1699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8083.18908.1

>prot_M-pyrifera_M_contig8083.18908.1 ID=prot_M-pyrifera_M_contig8083.18908.1|Name=mRNA_M-pyrifera_M_contig8083.18908.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
QLVAEILHKITDELPGQYVFDVVTNNLGALERVSRTAYRLVCVAEDSSSA
LDGRSAATILRQSCPGLSVILLLNDSKQR
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mRNA from alignment at M-pyrifera_M_contig8083:1068..1699+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8083.18908.1 ID=mRNA_M-pyrifera_M_contig8083.18908.1|Name=mRNA_M-pyrifera_M_contig8083.18908.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=632bp|location=Sequence derived from alignment at M-pyrifera_M_contig8083:1068..1699+ (Macrocystis pyrifera P11B4 male)
CAGCTGGTGGCAGAGATCCTGCACAAGATTACGGACGAGTTGCCCGGACA
GTACGTGTTCGACGTCGTAACGAACAACCTCGGAGCCTTGGAGCGCGTGA
GCCGCACGGCGTACCGGTTAGTGTGTGTGGCCGAAGACTCAAGCAGTGCG
CTCGACGGCCGTAGTGCGGCAACTATCCTGCGGCAGGTGCGTTGGGGAGA
AACAAAGATAGAGAGAGAGGGGGGGGTATCTGACTGCATGGCTTGTTTCG
CAACACACGTGTTTTATTAGGGGTTGTGTCGAAGACAGAACAGCAGTCGT
AGGGGCACCCGGCGGGGGATGAGACCCGCGGGTCAGAGGACGGTAGCGTG
CATGGTCGCGCCCCCAAGACTTGTTATAAAGGGCAGTGGCCTTCCGTGGG
CATTTCACGTCGATGTATACAGGCTGTGACATAACAGGTACCTTGCGCAA
GATATATCTGGTACAACCCTAGCTGCTATCTCAAATGTGTCGATTCTCTC
CCGTCTGTGCCCCGTTGCCCGCCCTCCGGATGCCACCCATACCGCCCCCA
TTACGCCTCCCAACCCGCGCATTCAATTCAGTCTTGCCCAGGGCTGAGCG
TGATTCTCCTCCTAAACGACAGCAAGCAGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8083:1068..1699+

>mRNA_M-pyrifera_M_contig8083.18908.1 ID=mRNA_M-pyrifera_M_contig8083.18908.1|Name=mRNA_M-pyrifera_M_contig8083.18908.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig8083:1068..1699+ (Macrocystis pyrifera P11B4 male)
CAGCTGGTGGCAGAGATCCTGCACAAGATTACGGACGAGTTGCCCGGACA
GTACGTGTTCGACGTCGTAACGAACAACCTCGGAGCCTTGGAGCGCGTGA
GCCGCACGGCGTACCGGTTAGTGTGTGTGGCCGAAGACTCAAGCAGTGCG
CTCGACGGCCGTAGTGCGGCAACTATCCTGCGGCAGCAGCTGGTGGCAGA
GATCCTGCACAAGATTACGGACGAGTTGCCCGGACAGTACGTGTTCGACG
TCGTAACGAACAACCTCGGAGCCTTGGAGCGCGTGAGCCGCACGGCGTAC
CGGTTAGTGTGTGTGGCCGAAGACTCAAGCAGTGCGCTCGACGGCCGTAG
TGCGGCAACTATCCTGCGGCAGTCTTGCCCAGGGCTGAGCGTGATTCTCC
TCCTAAACGACAGCAAGCAGAGGTCTTGCCCAGGGCTGAGCGTGATTCTC
CTCCTAAACGACAGCAAGCAGAGG
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