mRNA_M-pyrifera_M_contig80789.18902.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80789.18902.1
Unique NamemRNA_M-pyrifera_M_contig80789.18902.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80789.18902.1 vs. uniprot
Match: A0A3M8G6G2_9BACT (MBL fold metallo-hydrolase n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G6G2_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.490e-9
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 ILRQAVREKAALFFYHSIHVKNGVLVQDEEKRYALLD 111
            ILRQA++EKA L FYHSIH K+G LVQDE+K+YAL++
Sbjct:  244 ILRQALKEKATLLFYHSIHTKSGKLVQDEDKKYALIE 280
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BLAST of mRNA_M-pyrifera_M_contig80789.18902.1 vs. uniprot
Match: A0A3D1GDF4_9BACT (Lactamase_B domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GDF4_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.490e-9
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ILRQAVREKAALFFYHSIHVKNGVLVQDEEKRYALLDVK 117
            ILRQA++E+A + FYHSIH K G L+QDEE+RYAL +VK
Sbjct:  244 ILRQALKERATILFYHSIHTKYGKLIQDEERRYALAEVK 282
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BLAST of mRNA_M-pyrifera_M_contig80789.18902.1 vs. uniprot
Match: A0A316TP32_9BACT (Lactamase_B domain-containing protein n=1 Tax=Rhodohalobacter mucosus TaxID=2079485 RepID=A0A316TP32_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 4.490e-6
Identity = 21/38 (55.26%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 ILRQAVREKAALFFYHSIHVKNGVLVQDEEKRYALLDV 114
            +LRQA++EKA +FFYHS++ K+G +  D++KRY L DV
Sbjct:  244 LLRQALKEKAVMFFYHSLYKKSGQISLDKKKRYVLKDV 281
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BLAST of mRNA_M-pyrifera_M_contig80789.18902.1 vs. uniprot
Match: A0A6A8Q9H6_9BACT (MBL fold metallo-hydrolase n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q9H6_9BACT)

HSP 1 Score: 47.8 bits (112), Expect = 4.140e-5
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 ILRQAVREKAALFFYHSIHVKNGVLVQDEEKRYALLDVK 117
            IL+QA++EKA L FYHSIHVK G L + + K++ L ++K
Sbjct:  243 ILKQALKEKAYLLFYHSIHVKAGRLERTKNKKFGLKEIK 281
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80789.18902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A3M8G6G2_9BACT1.490e-970.27MBL fold metallo-hydrolase n=1 Tax=Balneola sp. Ta... [more]
A0A3D1GDF4_9BACT1.490e-966.67Lactamase_B domain-containing protein n=1 Tax=Baln... [more]
A0A316TP32_9BACT4.490e-655.26Lactamase_B domain-containing protein n=1 Tax=Rhod... [more]
A0A6A8Q9H6_9BACT4.140e-553.85MBL fold metallo-hydrolase n=1 Tax=Balneolaceae ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80789contigM-pyrifera_M_contig80789:822..941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.7104454-CDS-M-pyrifera_M_contig80789:821..9411622816712.7104454-CDS-M-pyrifera_M_contig80789:821..941Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80789 822..941 -
1692278135.1793227-CDS-M-pyrifera_M_contig80789:821..9411692278135.1793227-CDS-M-pyrifera_M_contig80789:821..941Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80789 822..941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80789.18902.1prot_M-pyrifera_M_contig80789.18902.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80789 822..941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80789.18902.1

>prot_M-pyrifera_M_contig80789.18902.1 ID=prot_M-pyrifera_M_contig80789.18902.1|Name=mRNA_M-pyrifera_M_contig80789.18902.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
ILRQAVREKAALFFYHSIHVKNGVLVQDEEKRYALLDVK*
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mRNA from alignment at M-pyrifera_M_contig80789:822..941-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80789.18902.1 ID=mRNA_M-pyrifera_M_contig80789.18902.1|Name=mRNA_M-pyrifera_M_contig80789.18902.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig80789:822..941- (Macrocystis pyrifera P11B4 male)
ATCCTGAGACAAGCAGTAAGAGAGAAAGCTGCGCTATTCTTCTATCACTC
CATCCACGTAAAAAACGGGGTTCTCGTTCAGGACGAAGAAAAGAGGTATG
CGTTGTTGGATGTTAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80789:822..941-

>mRNA_M-pyrifera_M_contig80789.18902.1 ID=mRNA_M-pyrifera_M_contig80789.18902.1|Name=mRNA_M-pyrifera_M_contig80789.18902.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig80789:822..941- (Macrocystis pyrifera P11B4 male)
ATCCTGAGACAAGCAGTAAGAGAGAAAGCTGCGCTATTCTTCTATCACTC
CATCCACGTAAAAAACGGGGTTCTCGTTCAGGACGAAGAAAAGAGGTATG
CGTTGTTGGATGTTAAATAAATCCTGAGACAAGCAGTAAGAGAGAAAGCT
GCGCTATTCTTCTATCACTCCATCCACGTAAAAAACGGGGTTCTCGTTCA
GGACGAAGAAAAGAGGTATGCGTTGTTGGATGTTAAATAA
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