mRNA_M-pyrifera_M_contig80785.18900.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80785.18900.1
Unique NamemRNA_M-pyrifera_M_contig80785.18900.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80785.18900.1 vs. uniprot
Match: D7FP49_ECTSI (Fimbrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP49_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 6.290e-57
Identity = 90/111 (81.08%), Postives = 100/111 (90.09%), Query Frame = 1 
Query:    1 QTVQLATFINARFKDEPLLASLLPVDGTNPDAFFDSWGDGRLLIVLVDAACEGAVDLAFLRRRARKPLGVSVRHLTIQHFAVLNDALEGCKNIEGLRLGFVGAEDFVQGNR 333
            +T QLATFINARF+DEPLL+++LPVDG  PD FF +WGDGRLLI LVDAACEG VDL F+RR+A KP GVSVRH TIQHFAVLNDAL+GCKNI+GLRLGFVGAEDFVQGNR
Sbjct:   27 ETYQLATFINARFEDEPLLSTILPVDGAKPDEFFGAWGDGRLLICLVDAACEGVVDLDFMRRKASKPQGVSVRHPTIQHFAVLNDALQGCKNIDGLRLGFVGAEDFVQGNR 137
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80785.18900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP49_ECTSI6.290e-5781.08Fimbrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP49... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80785contigM-pyrifera_M_contig80785:149..484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue5e-46
Seed eggNOG ortholog2880.D7FP49
KEGG koko:K17275,ko:K17276
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin filament network formation
EggNOG OGsCOG5069@1,KOG0046@2759
Ec32 ortholog descriptionFimbrin
Ec32 orthologEc-10_002480.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147,ko04812
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.6377757-CDS-M-pyrifera_M_contig80785:148..4841622816712.6377757-CDS-M-pyrifera_M_contig80785:148..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80785 149..484 -
1692278135.1446486-CDS-M-pyrifera_M_contig80785:148..4841692278135.1446486-CDS-M-pyrifera_M_contig80785:148..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80785 149..484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80785.18900.1prot_M-pyrifera_M_contig80785.18900.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80785 149..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80785.18900.1

>prot_M-pyrifera_M_contig80785.18900.1 ID=prot_M-pyrifera_M_contig80785.18900.1|Name=mRNA_M-pyrifera_M_contig80785.18900.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
QTVQLATFINARFKDEPLLASLLPVDGTNPDAFFDSWGDGRLLIVLVDAA
CEGAVDLAFLRRRARKPLGVSVRHLTIQHFAVLNDALEGCKNIEGLRLGF
VGAEDFVQGNR*
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mRNA from alignment at M-pyrifera_M_contig80785:149..484-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80785.18900.1 ID=mRNA_M-pyrifera_M_contig80785.18900.1|Name=mRNA_M-pyrifera_M_contig80785.18900.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig80785:149..484- (Macrocystis pyrifera P11B4 male)
CAGACGGTTCAACTCGCGACCTTCATCAACGCGCGGTTCAAAGACGAGCC
GCTCCTGGCGTCCCTCCTGCCGGTGGACGGAACCAACCCGGACGCGTTTT
TCGACTCATGGGGGGACGGGCGGCTGCTCATAGTCCTCGTCGACGCGGCG
TGCGAGGGGGCCGTGGACCTCGCCTTTTTGCGGCGCCGCGCGAGGAAGCC
TTTGGGGGTGAGCGTGCGGCACCTGACGATCCAGCACTTCGCCGTCTTGA
ACGATGCCCTTGAGGGCTGCAAGAACATCGAAGGCTTGCGGCTTGGGTTT
GTGGGCGCCGAGGATTTCGTGCAGGGAAACCGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80785:149..484-

>mRNA_M-pyrifera_M_contig80785.18900.1 ID=mRNA_M-pyrifera_M_contig80785.18900.1|Name=mRNA_M-pyrifera_M_contig80785.18900.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig80785:149..484- (Macrocystis pyrifera P11B4 male)
CAGACGGTTCAACTCGCGACCTTCATCAACGCGCGGTTCAAAGACGAGCC
GCTCCTGGCGTCCCTCCTGCCGGTGGACGGAACCAACCCGGACGCGTTTT
TCGACTCATGGGGGGACGGGCGGCTGCTCATAGTCCTCGTCGACGCGGCG
TGCGAGGGGGCCGTGGACCTCGCCTTTTTGCGGCGCCGCGCGAGGAAGCC
TTTGGGGGTGAGCGTGCGGCACCTGACGATCCAGCACTTCGCCGTCTTGA
ACGATGCCCTTGAGGGCTGCAAGAACATCGAAGGCTTGCGGCTTGGGTTT
GTGGGCGCCGAGGATTTCGTGCAGGGAAACCGGTGACAGACGGTTCAACT
CGCGACCTTCATCAACGCGCGGTTCAAAGACGAGCCGCTCCTGGCGTCCC
TCCTGCCGGTGGACGGAACCAACCCGGACGCGTTTTTCGACTCATGGGGG
GACGGGCGGCTGCTCATAGTCCTCGTCGACGCGGCGTGCGAGGGGGCCGT
GGACCTCGCCTTTTTGCGGCGCCGCGCGAGGAAGCCTTTGGGGGTGAGCG
TGCGGCACCTGACGATCCAGCACTTCGCCGTCTTGAACGATGCCCTTGAG
GGCTGCAAGAACATCGAAGGCTTGCGGCTTGGGTTTGTGGGCGCCGAGGA
TTTCGTGCAGGGAAACCGGTGA
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