mRNA_M-pyrifera_M_contig80779.18899.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80779.18899.1
Unique NamemRNA_M-pyrifera_M_contig80779.18899.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80779.18899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80779contigM-pyrifera_M_contig80779:127..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size385
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.6089509-CDS-M-pyrifera_M_contig80779:126..5101622816712.6089509-CDS-M-pyrifera_M_contig80779:126..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80779 127..510 +
1692278135.1327176-CDS-M-pyrifera_M_contig80779:126..5101692278135.1327176-CDS-M-pyrifera_M_contig80779:126..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80779 127..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80779.18899.1prot_M-pyrifera_M_contig80779.18899.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80779 127..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80779.18899.1

>prot_M-pyrifera_M_contig80779.18899.1 ID=prot_M-pyrifera_M_contig80779.18899.1|Name=mRNA_M-pyrifera_M_contig80779.18899.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
RTLHYYHEKTSALCSLVDLRRFVPVIPTPRRCSQQKAPIYFREQSPISPR
WDSNSGFRTEYTRRFTANMSTKRSFRFRPEWFICAQETWHTDLTWKNTGK
TQSTVETVQIMYRSIRDLSAPLEKSSA*
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mRNA from alignment at M-pyrifera_M_contig80779:127..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80779.18899.1 ID=mRNA_M-pyrifera_M_contig80779.18899.1|Name=mRNA_M-pyrifera_M_contig80779.18899.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig80779:127..510+ (Macrocystis pyrifera P11B4 male)
CGTACCTTGCATTATTATCACGAGAAGACTTCGGCCCTTTGTTCCCTCGT
CGACTTGCGTCGATTTGTGCCTGTGATACCCACGCCACGAAGGTGCTCTC
AGCAAAAGGCTCCTATCTATTTTCGCGAACAGAGCCCAATCTCACCACGG
TGGGACTCGAACTCGGGGTTCCGGACGGAATATACGAGGCGTTTCACCGC
TAATATGAGCACCAAAAGGTCGTTCCGTTTTCGGCCTGAGTGGTTCATAT
GTGCGCAAGAGACGTGGCATACAGATCTTACCTGGAAAAACACAGGAAAA
ACACAATCTACAGTAGAGACTGTGCAGATCATGTACAGATCAATCAGGGA
TCTATCTGCCCCCCTCGAAAAATCTAGTGCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80779:127..510+

>mRNA_M-pyrifera_M_contig80779.18899.1 ID=mRNA_M-pyrifera_M_contig80779.18899.1|Name=mRNA_M-pyrifera_M_contig80779.18899.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig80779:127..510+ (Macrocystis pyrifera P11B4 male)
CGTACCTTGCATTATTATCACGAGAAGACTTCGGCCCTTTGTTCCCTCGT
CGACTTGCGTCGATTTGTGCCTGTGATACCCACGCCACGAAGGTGCTCTC
AGCAAAAGGCTCCTATCTATTTTCGCGAACAGAGCCCAATCTCACCACGG
TGGGACTCGAACTCGGGGTTCCGGACGGAATATACGAGGCGTTTCACCGC
TAATATGAGCACCAAAAGGTCGTTCCGTTTTCGGCCTGAGTGGTTCATAT
GTGCGCAAGAGACGTGGCATACAGATCTTACCTGGAAAAACACAGGAAAA
ACACAATCTACAGTAGAGACTGTGCAGATCATGTACAGATCAATCAGGGA
TCTATCTGCCCCCCTCGAAAAATCTAGTGCGTAGCGTACCTTGCATTATT
ATCACGAGAAGACTTCGGCCCTTTGTTCCCTCGTCGACTTGCGTCGATTT
GTGCCTGTGATACCCACGCCACGAAGGTGCTCTCAGCAAAAGGCTCCTAT
CTATTTTCGCGAACAGAGCCCAATCTCACCACGGTGGGACTCGAACTCGG
GGTTCCGGACGGAATATACGAGGCGTTTCACCGCTAATATGAGCACCAAA
AGGTCGTTCCGTTTTCGGCCTGAGTGGTTCATATGTGCGCAAGAGACGTG
GCATACAGATCTTACCTGGAAAAACACAGGAAAAACACAATCTACAGTAG
AGACTGTGCAGATCATGTACAGATCAATCAGGGATCTATCTGCCCCCCTC
GAAAAATCTAGTGCGTAG
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