mRNA_M-pyrifera_M_contig80741.18895.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80741.18895.1
Unique NamemRNA_M-pyrifera_M_contig80741.18895.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80741.18895.1 vs. uniprot
Match: UPI00143D0027 (zinc finger protein 271-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143D0027)

HSP 1 Score: 77.8 bits (190), Expect = 2.780e-13
Identity = 47/175 (26.86%), Postives = 77/175 (44.00%), Query Frame = 1
Query:    1 ECGGLFGV----KSHLLRHLRNVHLDHRPHACVECDYKAQTRGDLQKHVLGKHRRKV----------CVGCNLCGRQVSVFSWPVHLRDYHRSVSLCCGVCGKSFKSSGGLRYHIRGLHQGLRPHVCSRCGKSFAYRSNLVEHERRHAGVMYRCDSCGKSYKSPTGLRDHRSSVH 483
            +CG  F      +SH +R  RN    ++   C  C+    T   L++H   KH+ ++          CV C         +    ++ D     +  C  C +SF+ +  LR H++ +H+G++PHVC  CGKSF   SN+  H   H G  ++C  C + ++    L  H    H
Sbjct:  458 KCGRFFSNSWQWESHKMRRCRNREGSNK---CKYCEASFSTEHKLKRHYR-KHKEELINDPEVEPFRCVSCPKIFYDEEFYQKHRNVHDPECWNNFKCNACDRSFRDAVRLREHVKSIHEGIKPHVCDMCGKSFHRLSNMKVHRALHLG--HKCTHCEQVFEKVRQLVSHIQDDH 626          
BLAST of mRNA_M-pyrifera_M_contig80741.18895.1 vs. uniprot
Match: A0A8D8HNK6_CULPI (Zinc finger protein 26 n=7 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8HNK6_CULPI)

HSP 1 Score: 75.9 bits (185), Expect = 1.230e-12
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  214 HLRDYHRSVSLCCGVCGKSFKSSGGLRYHIRGLHQGLRPHVCSRCGKSFAYRSNLVEHERRHAGVM--YRCDSCGKSYKSPTGLRDHRSS 477
            H +D +   ++ C +C + F      R + R  +   R H+C  CG  +A+R+NL+EHER + G +  Y+C  C K+YK+P GL++HR +
Sbjct:  393 HEQDRNAEHNVTCDICHRGFPDE---RTYSRHRNDKTRKHICKTCGVQYAFRANLIEHERSNCGQVARYKCSQCDKAYKTPGGLKNHRKT 479          
BLAST of mRNA_M-pyrifera_M_contig80741.18895.1 vs. uniprot
Match: UPI0018E390E0 (uncharacterized protein LOC6048090 n=1 Tax=Culex quinquefasciatus TaxID=7176 RepID=UPI0018E390E0)

HSP 1 Score: 75.9 bits (185), Expect = 1.410e-12
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  214 HLRDYHRSVSLCCGVCGKSFKSSGGLRYHIRGLHQGLRPHVCSRCGKSFAYRSNLVEHERRHAGVM--YRCDSCGKSYKSPTGLRDHRSS 477
            H +D +   ++ C +C + F      R + R  +   R H+C  CG  +A+R+NL+EHER + G +  Y+C  C K+YK+P GL++HR +
Sbjct: 1445 HEQDRNAEHNVTCDICHRGFPDE---RTYSRHRNDKTRKHICKTCGVQYAFRANLIEHERSNCGQVARYKCSQCDKAYKTPGGLKNHRKT 1531          
BLAST of mRNA_M-pyrifera_M_contig80741.18895.1 vs. uniprot
Match: UPI001E1D37AB (zinc finger protein 271-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D37AB)

HSP 1 Score: 75.1 bits (183), Expect = 2.420e-12
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 1
Query:   82 CVECDYKAQTRGDLQKHVLGKHRRKVCVGCNLCGRQVSVFS--WPVHLRDYHRSVS---LCCGVCGKSFKSSGGLRYHIRGLHQGLRPHVCS--RCGKSFAYRSNLVEHERRHAGVMYRCDSCGKSYKSPTGLRDHRSS 477
            CV CD K        +H+L  +++     C  C ++ S  S  +  HL+  H++++     C +CG+ FKS      H R +H G RP+VC    C K+F  R  L +H+  H    Y CD CG+ +K P+ L +HR S
Sbjct:  625 CVLCDKKFSDTKFYNRHLLIHNKKS---SCPYCPKKFSEKSNTFYHHLKS-HKTITEYPYVCDICGEKFKSKRHFDPHRR-IHTGERPYVCEVKDCKKAFRSRDGLDQHKWCHKNEHYICDFCGRKFKKPSLLNNHRLS 758          
BLAST of mRNA_M-pyrifera_M_contig80741.18895.1 vs. uniprot
Match: UPI001C70B249 (zinc finger protein 225-like isoform X1 n=2 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C70B249)

HSP 1 Score: 73.6 bits (179), Expect = 8.110e-12
Identity = 52/190 (27.37%), Postives = 75/190 (39.47%), Query Frame = 1
Query:    4 CGGLFGVKSHLLRHLRNVHLDHRPHACVECDYKAQTRGDLQKHVLGKHRRKVCVGCNLCGRQV-SVFSWPVHLRDYHRSVS----LCCGVCGKSFKSSGGLRYHIRGLHQGLRPHVCSRCGKSFAYRSNLVEHERRHAGVMY-------------------------RCDSCGKSYKSPTGLRDHRSSVH 483
            CG  F  K+ L+ H++ VH + +   C  C  K   R  +  H+   H  +    CN C     +V +  +H R  H   +      C +CG+ F     L  H R  H G +P  C  CGK FA + N++EHER   G                            RCD CG  + S + +  H S +H
Sbjct:  581 CGKSF-KKNSLIHHIKLVHKEGKVQ-CPHCPKKFTYRCKMLAHIDANHSLEKKYKCNHCSYTARTVNTLNLHRRRCHMDPNKLRNYVCKICGRKFFLPSKLTLHYR-THTGEKPFKCQTCGKGFAAKYNMMEHERCVHGERVQLKHPDGSTTVRVVKHRRAPRAPGRRCDLCGVDFPSSSAILQHMSEIH 767          
BLAST of mRNA_M-pyrifera_M_contig80741.18895.1 vs. uniprot
Match: UPI001CA9BDAB (zinc finger protein 845-like n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA9BDAB)

HSP 1 Score: 73.2 bits (178), Expect = 1.070e-11
Identity = 46/174 (26.44%), Postives = 76/174 (43.68%), Query Frame = 1
Query:    4 CGGLFGV----KSHLLRHLRNVHLDHRPHACVECDYKAQTRGDLQKHVLGKHRRKV----------CVGCNLCGRQVSVFSWPVHLRDYHRSVSLCCGVCGKSFKSSGGLRYHIRGLHQGLRPHVCSRCGKSFAYRSNLVEHERRHAGVMYRCDSCGKSYKSPTGLRDHRSSVH 483
            CG  F      + H  R  RN       + C  C+    T   L+KH L KH++++          CV C         +    ++ D     +  C +C +SF+ +  L+ H++ +H+G++PH C  CGKSF   SN+  H   H G  ++C  C ++++    L  H    H
Sbjct:  389 CGRFFSSSWEWEVHKTRRCRN----REGNKCKYCEAAFSTNHKLKKH-LRKHKQEMFSDPTVKIFKCVSCPKIFVDEEFYQKHRNVHDPECWNNFKCEICSRSFRDNVRLKEHMKSIHEGVKPHTCDVCGKSFHRLSNMKAHRALHFG--HKCPHCEQNFEKIRQLVTHIQEDH 555          
BLAST of mRNA_M-pyrifera_M_contig80741.18895.1 vs. uniprot
Match: UPI001FB5B884 (zinc finger protein 224-like n=2 Tax=Penaeus TaxID=133894 RepID=UPI001FB5B884)

HSP 1 Score: 72.8 bits (177), Expect = 1.530e-11
Identity = 52/192 (27.08%), Postives = 77/192 (40.10%), Query Frame = 1
Query:    4 CGGLFGVKSHLLRHLRNVHLDHRPHACVECDYKAQTRGDLQKHVLGKH---RRKVCVGCNLCGRQVSVFSWPVHLRDYHRSVS----LCCGVCGKSFKSSGGLRYHIRGLHQGLRPHVCSRCGKSFAYRSNLVEHERRHAGVMY-------------------------RCDSCGKSYKSPTGLRDHRSSVH 483
            CG  F  K+ L+ H++ VH + +   C  C  K   R  +  H+   H   ++  C  C+   R V+  +  +H R  H   +      C +CG+ F     L  H R  H G +P  C  CGK FA + N++EHER   G                            RCD CG  + S + +  H S +H
Sbjct:  701 CGKSF-KKNSLIHHIKLVHKEGKVQ-CPHCPKKFTYRCKMLAHIDANHSIEKKYKCNHCSYTARTVNTLN--LHRRRCHMDPNKLRNYVCKICGRKFFLPSKLTLHYR-THTGEKPFKCQTCGKGFAAKYNMMEHERCVHGERVQLKHPDGSTTVRVVKHRRAPRAPGRRCDLCGVDFPSSSAVLQHMSEIH 887          
BLAST of mRNA_M-pyrifera_M_contig80741.18895.1 vs. uniprot
Match: A0A8J5N088_HOMAM (Zinc finger protein 41-like 3 n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5N088_HOMAM)

HSP 1 Score: 72.4 bits (176), Expect = 2.030e-11
Identity = 46/140 (32.86%), Postives = 67/140 (47.86%), Query Frame = 1
Query:    4 CGGLFGVKSHLLRHLRNVHLDHRPHACVECDY---KAQTRGDLQKHVLGKH---RRKVCVGCNLCGRQVSVFSWPVHLRDYHRSVSLC----CGVCGKSFKSSGGLRYHIRGLHQGLRPHVCSRCGKSFAYRSNLVEHER 393
            CG  F  K+ L+ H++ VH +    ACV+C +   K   R  +  HV   H   ++  C  CN   R V+  +  +H R YH   +      C +CG+ F     L  H R  H G +P  C  CGK+FA + N+ EHE+
Sbjct:  582 CGRSF-KKNSLIHHIKVVHKE----ACVQCPHCPKKFAYRSKMLSHVDSSHTVEKKYKCNQCNYAARTVNTLN--LHRRRYHLDPNKIRRYGCKICGRKFFLPSKLTLHYR-THTGEKPFKCQSCGKAFASKYNMTEHEK 713          
BLAST of mRNA_M-pyrifera_M_contig80741.18895.1 vs. uniprot
Match: UPI001C8FBE8A (zinc finger protein 260-like n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C8FBE8A)

HSP 1 Score: 70.5 bits (171), Expect = 9.060e-11
Identity = 50/153 (32.68%), Postives = 65/153 (42.48%), Query Frame = 1
Query:    4 CGGLFGVKSHLLRHLRNVHLDHRPHA------CVEC-----DYKAQTRGDLQKHVLGKHRRKVCVGCNLCGRQVSVFSW----------PVHLRDYHRSVSLCCGVCGKSFKSSGGLRYHIRGLHQGLRPHVCSRCGKSFAYRSNLVEHERRH 399
            CG  F   + L RH+   H   RP +      C  C      YK Q R   + H    H       C  CG +    SW          P H+   H + S  C +C + +  S  L+ HIR +HQ L+PH C+RCGK FA + NL  HE  H
Sbjct:  458 CGAQFAFVAALQRHMLKQHKQRRPRSTRRICSCNHCGRIFYSYK-QLRWHAEIHGKKPH------SCPTCGLRFLHESWLTRHIRAQHDPSHMGP-HSAESKPCPICNRVYMRSS-LQKHIRMMHQELKPHQCTRCGKRFAVKCNLQTHELSH 601          
BLAST of mRNA_M-pyrifera_M_contig80741.18895.1 vs. uniprot
Match: UPI001E676CCD (zinc finger protein 571-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E676CCD)

HSP 1 Score: 68.2 bits (165), Expect = 5.860e-10
Identity = 52/195 (26.67%), Postives = 77/195 (39.49%), Query Frame = 1
Query:    4 CGGLFGVKSHLLRHLRNVHLDHRPHACVECDY---KAQTRGDLQKHVLGKH---RRKVCVGCNLCGRQVSVFSWPVHLRDYHRSVSLC----CGVCGKSFKSSGGLRYHIRGLHQGLRPHVCSRCGKSFAYRSNLVEHERRHAGVMY-------------------------RCDSCGKSYKSPTGLRDHRSSVH 483
            CG  F  K+ ++ H++ VH +    ACV+C     K   R  +  H    H   ++  C  CN   R  +  +  +H R YH   +      C +CG+ F     L  H R  H G +P  C  CGK+FA + N++EHE+   G                            RCD CG    S + + +H    H
Sbjct:  613 CGKSF-KKNSIIHHIKVVHRE----ACVKCPLCPKKFAYRSKMLAHFDANHTLEKKYKCNQCNYTARTANTLN--LHRRRYHTDPNKLHRYGCKLCGRKFFLPSKLTLHYR-THTGEKPFKCQSCGKAFASKYNMMEHEKCVHGERVQLKHPDGSTTVRIVKHRRAPRAPGRRCDLCGVDLPSSSAVLNHMREEH 799          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80741.18895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00143D00272.780e-1326.86zinc finger protein 271-like n=1 Tax=Belonocnema k... [more]
A0A8D8HNK6_CULPI1.230e-1235.56Zinc finger protein 26 n=7 Tax=Culex pipiens TaxID... [more]
UPI0018E390E01.410e-1235.56uncharacterized protein LOC6048090 n=1 Tax=Culex q... [more]
UPI001E1D37AB2.420e-1233.09zinc finger protein 271-like n=1 Tax=Mercenaria me... [more]
UPI001C70B2498.110e-1227.37zinc finger protein 225-like isoform X1 n=2 Tax=Pe... [more]
UPI001CA9BDAB1.070e-1126.44zinc finger protein 845-like n=1 Tax=Leptopilina h... [more]
UPI001FB5B8841.530e-1127.08zinc finger protein 224-like n=2 Tax=Penaeus TaxID... [more]
A0A8J5N088_HOMAM2.030e-1132.86Zinc finger protein 41-like 3 n=1 Tax=Homarus amer... [more]
UPI001C8FBE8A9.060e-1132.68zinc finger protein 260-like n=1 Tax=Amphibalanus ... [more]
UPI001E676CCD5.860e-1026.67zinc finger protein 571-like n=1 Tax=Procambarus c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80741contigM-pyrifera_M_contig80741:362..940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score85.9
Seed ortholog evalue2.3e-14
Seed eggNOG ortholog8090.ENSORLP00000011293
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc finger protein
EggNOG OGs3AEWM@33154,3BXFU@33208,3DF5D@33213,48IDZ@7711,49ET8@7742,4A6A8@7898,KOG1721@1,KOG1721@2759
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size579
Cds size579
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.360293-CDS-M-pyrifera_M_contig80741:361..9401622816712.360293-CDS-M-pyrifera_M_contig80741:361..940Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80741 362..940 -
1692278134.9783797-CDS-M-pyrifera_M_contig80741:361..9401692278134.9783797-CDS-M-pyrifera_M_contig80741:361..940Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80741 362..940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80741.18895.1prot_M-pyrifera_M_contig80741.18895.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80741 362..940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80741.18895.1

>prot_M-pyrifera_M_contig80741.18895.1 ID=prot_M-pyrifera_M_contig80741.18895.1|Name=mRNA_M-pyrifera_M_contig80741.18895.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
ECGGLFGVKSHLLRHLRNVHLDHRPHACVECDYKAQTRGDLQKHVLGKHR
RKVCVGCNLCGRQVSVFSWPVHLRDYHRSVSLCCGVCGKSFKSSGGLRYH
IRGLHQGLRPHVCSRCGKSFAYRSNLVEHERRHAGVMYRCDSCGKSYKSP
TGLRDHRSSVHLGIHHPCSHCSKIFAQKSNLRTHLKKIHGVE*
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mRNA from alignment at M-pyrifera_M_contig80741:362..940-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80741.18895.1 ID=mRNA_M-pyrifera_M_contig80741.18895.1|Name=mRNA_M-pyrifera_M_contig80741.18895.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig80741:362..940- (Macrocystis pyrifera P11B4 male)
GAATGTGGTGGATTGTTTGGTGTGAAGAGCCATCTTCTGCGTCATCTTCG TAACGTGCATTTGGATCATCGTCCGCATGCATGTGTGGAGTGTGACTACA AGGCTCAGACACGTGGGGATCTCCAGAAACATGTCCTTGGCAAGCATCGT CGCAAGGTTTGTGTGGGTTGCAATCTTTGTGGTCGTCAGGTGTCTGTGTT TTCTTGGCCTGTGCACCTTCGTGACTACCATCGCTCTGTGTCGTTGTGTT GTGGTGTGTGTGGGAAGTCGTTCAAGTCCTCTGGAGGTCTTCGATATCAC ATTCGAGGACTCCATCAAGGCCTTCGTCCCCATGTTTGCTCTCGTTGTGG GAAGTCGTTTGCTTATCGATCTAATCTTGTTGAACACGAGCGCAGACATG CTGGTGTGATGTATAGGTGTGATTCTTGTGGGAAATCGTACAAATCTCCC ACTGGCCTTCGTGACCATCGATCCAGTGTTCACCTTGGCATTCACCATCC ATGTTCTCACTGCAGCAAGATATTTGCACAGAAATCCAACCTCCGCACAC ACCTGAAGAAGATCCATGGCGTGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80741:362..940-

>mRNA_M-pyrifera_M_contig80741.18895.1 ID=mRNA_M-pyrifera_M_contig80741.18895.1|Name=mRNA_M-pyrifera_M_contig80741.18895.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig80741:362..940- (Macrocystis pyrifera P11B4 male)
GAATGTGGTGGATTGTTTGGTGTGAAGAGCCATCTTCTGCGTCATCTTCG
TAACGTGCATTTGGATCATCGTCCGCATGCATGTGTGGAGTGTGACTACA
AGGCTCAGACACGTGGGGATCTCCAGAAACATGTCCTTGGCAAGCATCGT
CGCAAGGTTTGTGTGGGTTGCAATCTTTGTGGTCGTCAGGTGTCTGTGTT
TTCTTGGCCTGTGCACCTTCGTGACTACCATCGCTCTGTGTCGTTGTGTT
GTGGTGTGTGTGGGAAGTCGTTCAAGTCCTCTGGAGGTCTTCGATATCAC
ATTCGAGGACTCCATCAAGGCCTTCGTCCCCATGTTTGCTCTCGTTGTGG
GAAGTCGTTTGCTTATCGATCTAATCTTGTTGAACACGAGCGCAGACATG
CTGGTGTGATGTATAGGTGTGATTCTTGTGGGAAATCGTACAAATCTCCC
ACTGGCCTTCGTGACCATCGATCCAGTGTTCACCTTGGCATTCACCATCC
ATGTTCTCACTGCAGCAAGATATTTGCACAGAAATCCAACCTCCGCACAC
ACCTGAAGAAGATCCATGGCGTGGAATAGGAATGTGGTGGATTGTTTGGT
GTGAAGAGCCATCTTCTGCGTCATCTTCGTAACGTGCATTTGGATCATCG
TCCGCATGCATGTGTGGAGTGTGACTACAAGGCTCAGACACGTGGGGATC
TCCAGAAACATGTCCTTGGCAAGCATCGTCGCAAGGTTTGTGTGGGTTGC
AATCTTTGTGGTCGTCAGGTGTCTGTGTTTTCTTGGCCTGTGCACCTTCG
TGACTACCATCGCTCTGTGTCGTTGTGTTGTGGTGTGTGTGGGAAGTCGT
TCAAGTCCTCTGGAGGTCTTCGATATCACATTCGAGGACTCCATCAAGGC
CTTCGTCCCCATGTTTGCTCTCGTTGTGGGAAGTCGTTTGCTTATCGATC
TAATCTTGTTGAACACGAGCGCAGACATGCTGGTGTGATGTATAGGTGTG
ATTCTTGTGGGAAATCGTACAAATCTCCCACTGGCCTTCGTGACCATCGA
TCCAGTGTTCACCTTGGCATTCACCATCCATGTTCTCACTGCAGCAAGAT
ATTTGCACAGAAATCCAACCTCCGCACACACCTGAAGAAGATCCATGGCG
TGGAATAG
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