mRNA_M-pyrifera_M_contig80737.18893.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80737.18893.1
Unique NamemRNA_M-pyrifera_M_contig80737.18893.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80737.18893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80737contigM-pyrifera_M_contig80737:22..612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.2792296-CDS-M-pyrifera_M_contig80737:21..1881622816712.2792296-CDS-M-pyrifera_M_contig80737:21..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80737 22..188 -
1692278134.945865-CDS-M-pyrifera_M_contig80737:21..1881692278134.945865-CDS-M-pyrifera_M_contig80737:21..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80737 22..188 -
1622816712.2899792-CDS-M-pyrifera_M_contig80737:302..6121622816712.2899792-CDS-M-pyrifera_M_contig80737:302..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80737 303..612 -
1692278134.9578607-CDS-M-pyrifera_M_contig80737:302..6121692278134.9578607-CDS-M-pyrifera_M_contig80737:302..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80737 303..612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80737.18893.1prot_M-pyrifera_M_contig80737.18893.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80737 22..612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80737.18893.1

>prot_M-pyrifera_M_contig80737.18893.1 ID=prot_M-pyrifera_M_contig80737.18893.1|Name=mRNA_M-pyrifera_M_contig80737.18893.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
VTVRSGGRVVGVVEVRRKTDPFAAAHRFVVAHDLDPSRTVPLAAAVRAQK
EAFLLHEKQQAERARKRKGRTQVRKFRGKATKTVPFSFQTSSRERTKAKG
SEAGASLGRLRVDVGGGKEGIIQLRVGDDPRVLVDSFRRTYGLPAEAVAH
LVDQLQARI
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mRNA from alignment at M-pyrifera_M_contig80737:22..612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80737.18893.1 ID=mRNA_M-pyrifera_M_contig80737.18893.1|Name=mRNA_M-pyrifera_M_contig80737.18893.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=591bp|location=Sequence derived from alignment at M-pyrifera_M_contig80737:22..612- (Macrocystis pyrifera P11B4 male)
GTTACAGTCCGAAGTGGTGGAAGGGTGGTTGGTGTTGTGGAAGTGCGTCG
CAAAACTGATCCATTTGCTGCAGCACATCGTTTTGTTGTTGCACATGATT
TGGATCCAAGTCGCACAGTCCCATTAGCAGCTGCAGTTCGTGCACAAAAA
GAAGCATTTTTGTTGCATGAGAAACAGCAAGCTGAAAGAGCGAGGAAGCG
GAAAGGAAGAACTCAGGTGAGGAAATTTCGTGGCAAGGCAACAAAAACCG
TCCCCTTCTCTTTCCAAACATCATCCAGAGAACGAACGAAAGCTAAAGGA
AGTGAAGCAGGTGGATTGGAATCCTCTCCAACCAGCACAGAGGCATCAGG
ATCAGTCCATGGAGATGCAAGTGGTGGAAGAGGAAAACGTAGAGGTGAGA
GAAAGAGAAGCACGCTGCAACGAGGTGCATCTCTTGGACGCTTACGTGTT
GATGTTGGTGGTGGGAAAGAAGGAATTATTCAGCTTCGAGTTGGAGATGA
TCCTAGAGTGCTTGTGGATAGCTTTCGACGTACCTATGGTTTACCAGCTG
AAGCAGTTGCACATTTAGTTGATCAATTGCAAGCAAGAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80737:22..612-

>mRNA_M-pyrifera_M_contig80737.18893.1 ID=mRNA_M-pyrifera_M_contig80737.18893.1|Name=mRNA_M-pyrifera_M_contig80737.18893.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig80737:22..612- (Macrocystis pyrifera P11B4 male)
GTTACAGTCCGAAGTGGTGGAAGGGTGGTTGGTGTTGTGGAAGTGCGTCG
CAAAACTGATCCATTTGCTGCAGCACATCGTTTTGTTGTTGCACATGATT
TGGATCCAAGTCGCACAGTCCCATTAGCAGCTGCAGTTCGTGCACAAAAA
GAAGCATTTTTGTTGCATGAGAAACAGCAAGCTGAAAGAGCGAGGAAGCG
GAAAGGAAGAACTCAGGTGAGGAAATTTCGTGGCAAGGCAACAAAAACCG
TCCCCTTCTCTTTCCAAACATCATCCAGAGAACGAACGAAAGCTAAAGGA
AGTGAAGCAGGTTACAGTCCGAAGTGGTGGAAGGGTGGTTGGTGTTGTGG
AAGTGCGTCGCAAAACTGATCCATTTGCTGCAGCACATCGTTTTGTTGTT
GCACATGATTTGGATCCAAGTCGCACAGTCCCATTAGCAGCTGCAGTTCG
TGCACAAAAAGAAGCATTTTTGTTGCATGAGAAACAGCAAGCTGAAAGAG
CGAGGAAGCGGAAAGGAAGAACTCAGGTGAGGAAATTTCGTGGCAAGGCA
ACAAAAACCGTCCCCTTCTCTTTCCAAACATCATCCAGAGAACGAACGAA
AGCTAAAGGAAGTGAAGCAGGTGCATCTCTTGGACGCTTACGTGTTGATG
TTGGTGGTGGGAAAGAAGGAATTATTCAGCTTCGAGTTGGAGATGATCCT
AGAGTGCTTGTGGATAGCTTTCGACGTACCTATGGTTTACCAGCTGAAGC
AGTTGCACATTTAGTTGATCAATTGCAAGCAAGAATCGTGCATCTCTTGG
ACGCTTACGTGTTGATGTTGGTGGTGGGAAAGAAGGAATTATTCAGCTTC
GAGTTGGAGATGATCCTAGAGTGCTTGTGGATAGCTTTCGACGTACCTAT
GGTTTACCAGCTGAAGCAGTTGCACATTTAGTTGATCAATTGCAAGCAAG
AATC
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