mRNA_M-pyrifera_M_contig8070.18888.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8070.18888.1
Unique NamemRNA_M-pyrifera_M_contig8070.18888.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8070.18888.1 vs. uniprot
Match: D7FZ56_ECTSI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ56_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 9.490e-36
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 MGGDH-GMEGKATEAEMVATNTPLAFRDSCAHLLIPLNKCRRATMYMPWQCSHERHIYEKCQYLE 192
            MGGDH GMEGKATE EMVA   P+AFRDSCAHLL+PLNKCRR+TMY+PWQCSHERHIYEKCQYL+
Sbjct:    1 MGGDHDGMEGKATEEEMVAAKMPMAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLD 65
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BLAST of mRNA_M-pyrifera_M_contig8070.18888.1 vs. uniprot
Match: A0A0G4MZR7_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=7 Tax=Plectosphaerellaceae TaxID=1033978 RepID=A0A0G4MZR7_9PEZI)

HSP 1 Score: 92.4 bits (228), Expect = 3.610e-23
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 MGGDHGMEGKATEAEMVATNTPLAFRDSCAHLLIPLNKCRRATMYMPWQCSHERHIYEKCQYLE 192
            MG D+  +G AT  EM     PLA+RDSCAHLLIPLN+CR  T Y+PW+CS ERH YEKCQY E
Sbjct:    1 MGSDNAPKGPATREEMREARLPLAYRDSCAHLLIPLNRCRTETWYLPWKCSDERHGYEKCQYEE 64
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BLAST of mRNA_M-pyrifera_M_contig8070.18888.1 vs. uniprot
Match: A0A3M7DNI4_HORWE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=5 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7DNI4_HORWE)

HSP 1 Score: 92.0 bits (227), Expect = 6.400e-23
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    7 GDHGMEGKATEAEMVATNTPLAFRDSCAHLLIPLNKCRRATMYMPWQCSHERHIYEKCQYLE 192
            GD+G + +AT AEM A   PLA+RD CAHLLIPLNKCR    Y+PW+CS ERH YEKCQY E
Sbjct:   11 GDNGPKTQATRAEMSAAKLPLAYRDQCAHLLIPLNKCRYDNYYLPWRCSDERHGYEKCQYEE 72
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BLAST of mRNA_M-pyrifera_M_contig8070.18888.1 vs. uniprot
Match: A0A0G4N0K7_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4N0K7_9PEZI)

HSP 1 Score: 91.7 bits (226), Expect = 7.290e-23
Identity = 41/64 (64.06%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 MGGDHGMEGKATEAEMVATNTPLAFRDSCAHLLIPLNKCRRATMYMPWQCSHERHIYEKCQYLE 192
            MG D+   G AT  EM     PLA+RDSCAHLLIPLN+CR  T Y+PW+CS ERH YEKCQY E
Sbjct:    1 MGSDNAPTGPATREEMREARLPLAYRDSCAHLLIPLNRCRTETWYLPWKCSDERHGYEKCQYEE 64
[Close]
BLAST of mRNA_M-pyrifera_M_contig8070.18888.1 vs. uniprot
Match: A0A8H4LWB4_9HYPO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Ophiocordycipitaceae TaxID=474942 RepID=A0A8H4LWB4_9HYPO)

HSP 1 Score: 91.7 bits (226), Expect = 7.490e-23
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   28 KATEAEMVATNTPLAFRDSCAHLLIPLNKCRRATMYMPWQCSHERHIYEKCQYLE 192
            +AT  EM     PLA+RDSCAH+LIPLNKCRRAT Y PW+C+ ERH YEKCQYLE
Sbjct:   11 RATREEMRDARLPLAYRDSCAHILIPLNKCRRATWYAPWKCTDERHSYEKCQYLE 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig8070.18888.1 vs. uniprot
Match: G9MJU7_HYPVG (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=6 Tax=Hypocreales TaxID=5125 RepID=G9MJU7_HYPVG)

HSP 1 Score: 91.7 bits (226), Expect = 7.490e-23
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 MGGDHGMEGK-ATEAEMVATNTPLAFRDSCAHLLIPLNKCRRATMYMPWQCSHERHIYEKCQYLE 192
            M  D   EG+ AT  EM     PLA+RDSCAHLLIPLNKCRR T Y PW+CS ERH YEKCQY+E
Sbjct:    1 MASDAATEGRQATREEMRDARLPLAYRDSCAHLLIPLNKCRRETWYAPWKCSDERHSYEKCQYVE 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig8070.18888.1 vs. uniprot
Match: A0A8H4Q223_9HYPO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Ophiocordyceps camponoti-floridani TaxID=2030778 RepID=A0A8H4Q223_9HYPO)

HSP 1 Score: 91.3 bits (225), Expect = 9.800e-23
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   28 KATEAEMVATNTPLAFRDSCAHLLIPLNKCRRATMYMPWQCSHERHIYEKCQYLE 192
            +AT  EM     PLA+RDSCAHLLIPLN+CR+AT YMPW+C+ ERH+YEKCQY E
Sbjct:    9 RATREEMRDERLPLAYRDSCAHLLIPLNRCRKATWYMPWKCTDERHVYEKCQYEE 63
[Close]
BLAST of mRNA_M-pyrifera_M_contig8070.18888.1 vs. uniprot
Match: A0A6A6V0A7_9PLEO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Sporormia fimetaria CBS 119925 TaxID=1340428 RepID=A0A6A6V0A7_9PLEO)

HSP 1 Score: 91.3 bits (225), Expect = 1.480e-22
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    7 GDHGMEGKATEAEMVATNTPLAFRDSCAHLLIPLNKCRRATMYMPWQCSHERHIYEKCQYLE 192
            GD     KAT  EM A   PLA+RDSCAHLLIPLN+CRRA  Y+PW+C  ERH YEKCQY E
Sbjct:   16 GDAAPARKATREEMSAERLPLAYRDSCAHLLIPLNRCRRAEYYLPWKCEDERHSYEKCQYEE 77
[Close]
BLAST of mRNA_M-pyrifera_M_contig8070.18888.1 vs. uniprot
Match: A0A6A6UGI8_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6UGI8_9PEZI)

HSP 1 Score: 91.3 bits (225), Expect = 1.610e-22
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   13 HGME---GKATEAEMVATNTPLAFRDSCAHLLIPLNKCRRATMYMPWQCSHERHIYEKCQYLE 192
            HG E   G AT  EM A   PLA+RDSCAHLLIPLNKCR+   Y+PW+C HERH YE CQY E
Sbjct:   15 HGHEDPKGPATREEMTAARLPLAYRDSCAHLLIPLNKCRQKEWYLPWKCDHERHSYEGCQYAE 77
[Close]
BLAST of mRNA_M-pyrifera_M_contig8070.18888.1 vs. uniprot
Match: A0A2P6R4N0_ROSCH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6R4N0_ROSCH)

HSP 1 Score: 90.5 bits (223), Expect = 3.340e-22
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   31 ATEAEMVATNTPLAFRDSCAHLLIPLNKCRRATMYMPWQCSHERHIYEKCQY 186
            AT+ EMV    P+A+RD CAHLLIPLNKCR+A MY+PW+C +ERH+YEKC+Y
Sbjct:   12 ATQEEMVENRVPIAYRDQCAHLLIPLNKCRQAEMYLPWKCGNERHVYEKCEY 63
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8070.18888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ56_ECTSI9.490e-3684.62NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0G4MZR7_9PEZI3.610e-2364.06NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A3M7DNI4_HORWE6.400e-2366.13NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0G4N0K7_9PEZI7.290e-2364.06NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A8H4LWB4_9HYPO7.490e-2370.91NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
G9MJU7_HYPVG7.490e-2366.15NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A8H4Q223_9HYPO9.800e-2369.09NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A6A6V0A7_9PLEO1.480e-2266.13NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A6A6UGI8_9PEZI1.610e-2265.08NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A2P6R4N0_ROSCH3.340e-2267.31NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8070contigM-pyrifera_M_contig8070:10206..10400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue1.9e-26
Seed eggNOG ortholog2880.D7FZ56
Preferred nameNDUFB7
KEGG koko:K03963,ko:K04498
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04714,ko04720,ko04723,ko04916,ko04919,ko04922,ko04932,ko05010,ko05012,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map00190,map01100,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04714,map04720,map04723,map04916,map04919,map04922,map04932,map05010,map05012,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG ModuleM00147
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005758,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009853,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.NADH dehydrogenase (quinone) activity
EggNOG OGsKOG3468@1,KOG3468@2759
Ec32 ortholog descriptionNADH:ubiquinone oxidoreductase, B18 subunit
Ec32 orthologEc-02_006350.1
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03036
Exons1
Model size195
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.0688126-CDS-M-pyrifera_M_contig8070:10205..104001622816712.0688126-CDS-M-pyrifera_M_contig8070:10205..10400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8070 10206..10400 +
1692278134.854893-CDS-M-pyrifera_M_contig8070:10205..104001692278134.854893-CDS-M-pyrifera_M_contig8070:10205..10400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8070 10206..10400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8070.18888.1prot_M-pyrifera_M_contig8070.18888.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8070 10206..10400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8070.18888.1

>prot_M-pyrifera_M_contig8070.18888.1 ID=prot_M-pyrifera_M_contig8070.18888.1|Name=mRNA_M-pyrifera_M_contig8070.18888.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
MGGDHGMEGKATEAEMVATNTPLAFRDSCAHLLIPLNKCRRATMYMPWQC
SHERHIYEKCQYLE*
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mRNA from alignment at M-pyrifera_M_contig8070:10206..10400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8070.18888.1 ID=mRNA_M-pyrifera_M_contig8070.18888.1|Name=mRNA_M-pyrifera_M_contig8070.18888.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig8070:10206..10400+ (Macrocystis pyrifera P11B4 male)
ATGGGAGGCGACCACGGCATGGAGGGGAAGGCGACTGAGGCTGAGATGGT
GGCGACTAACACCCCCCTGGCGTTCCGGGACTCCTGCGCCCACCTCCTGA
TACCCCTGAACAAGTGCAGGAGGGCGACTATGTACATGCCGTGGCAGTGC
TCGCACGAGCGCCACATCTACGAGAAGTGCCAGTACCTCGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8070:10206..10400+

>mRNA_M-pyrifera_M_contig8070.18888.1 ID=mRNA_M-pyrifera_M_contig8070.18888.1|Name=mRNA_M-pyrifera_M_contig8070.18888.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig8070:10206..10400+ (Macrocystis pyrifera P11B4 male)
ATGGGAGGCGACCACGGCATGGAGGGGAAGGCGACTGAGGCTGAGATGGT
GGCGACTAACACCCCCCTGGCGTTCCGGGACTCCTGCGCCCACCTCCTGA
TACCCCTGAACAAGTGCAGGAGGGCGACTATGTACATGCCGTGGCAGTGC
TCGCACGAGCGCCACATCTACGAGAAGTGCCAGTACCTCGAGTGAATGGG
AGGCGACCACGGCATGGAGGGGAAGGCGACTGAGGCTGAGATGGTGGCGA
CTAACACCCCCCTGGCGTTCCGGGACTCCTGCGCCCACCTCCTGATACCC
CTGAACAAGTGCAGGAGGGCGACTATGTACATGCCGTGGCAGTGCTCGCA
CGAGCGCCACATCTACGAGAAGTGCCAGTACCTCGAGTGA
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