mRNA_M-pyrifera_M_contig80682.18886.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80682.18886.1
Unique NamemRNA_M-pyrifera_M_contig80682.18886.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80682.18886.1 vs. uniprot
Match: A0A835ZF42_9STRA (SPOC like C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF42_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.060e-8
Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  130 FANPQLAAFHAVAEAILLGEWDISLDNIRKHAPDETLPDPA-LPARVKDAAIALREATGL---PEPGVPPPKKTALGTKRARP-KPTAGELEDAGRCVKAARKEGTLKKLTVPQLKDGLRALDLPVSGKKADLIARLE 528
            + NP L   +A  +A+ LGE ++     ++   D T P+   +     +   AL+EA GL   PE  +P PK+ A       P K    E+EDA     A    G L+  T PQLK GL++L LPVSGKKA+LI R++
Sbjct:  483 YENPMLQKHYAGLQALALGEKELEW---KEDKDDYTRPNHVQIDQAAGEPLQALKEACGLGDEPE-DIPDPKRKAKAPAGGAPAKKVKREVEDADINWAAEAASGGLQAFTNPQLKAGLKSLGLPVSGKKAELIQRIQ 616          
BLAST of mRNA_M-pyrifera_M_contig80682.18886.1 vs. uniprot
Match: A0A812ZDG9_9DINO (XRCC6 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZDG9_9DINO)

HSP 1 Score: 61.6 bits (148), Expect = 7.530e-8
Identity = 66/201 (32.84%), Postives = 91/201 (45.27%), Query Frame = 1
Query:    1 IPWADDLR-RVTIPTIEPPTQDA-IQAARTLVRKAPLGFAAGPGTFANPQLAAFHAVAEAILLGE---WDISLDNIRKHAPDETLPDPALPARVK-DAAIALREATGLPEPGVPPPKKTALGTKRARPKPTAGELEDAGRCVKAARKE----------------GTLKKLTVPQLKDGLRALDLPVSGKKADLIARLEEAI 537
            +P+ADD+R  V +P       DA +QAA  L+++  L  A  P    NP L  + +  EA+ LG+   W+   D +R   PD    + A     +  AA+A     GL     PPP     G KR++    A   E AG   K AR +                G L K TVP LK  L+ +  P SG+KADL+ RLE  +
Sbjct:  393 LPFADDIRLNVPVPDTPAAVSDASVQAAEALIQRLSLP-AFHPSQSDNPVLQKWFSSTEALALGQERTWNEEQDLLR---PDTAALEGAAEQFAEWQAAVAADAGEGL-----PPPSLAVGGVKRSQAAAGASG-EAAGSQGKRARVDSVDAPDHAAVVAQHAAGKLSKYTVPLLKAILKRMGAPTSGRKADLVQRLESLL 583          
BLAST of mRNA_M-pyrifera_M_contig80682.18886.1 vs. uniprot
Match: A0A0B7JQU0_BIOOC (ATP-dependent DNA helicase II subunit 1 n=2 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A0B7JQU0_BIOOC)

HSP 1 Score: 61.2 bits (147), Expect = 1.040e-7
Identity = 57/192 (29.69%), Postives = 89/192 (46.35%), Query Frame = 1
Query:    1 IPWADDLRRVTIP-TIEPPTQDAIQAARTLVRKAPLGFAA-GPGTFANPQLAAFHAVAEAILLGEWDISLDNIRKHAPDETLPD-PALPARV------------KDAAIALREATGLPEPGVPPPKKTALGTKRARPKPTAGELEDAGRCVKAARKEGTLKKLTVPQLKDGLRALDLPVSGKKADLIARLEE 531
            +P+ DD+R +  P  +   + D     RT++++  L  A   P  + NP L   + + +A+ L       D + +   D T P   A+  R             K+A  A +      +P    P++ A  ++    KP+   L  A   +K+A + GTL K+TV QLKD L A  L  SGKKADL+ R+EE
Sbjct:  456 LPFTDDIREIKAPGELARSSDDLTTQMRTIIQQLQLPKAMFNPKKYPNPSLQWHYKILQALALE------DEVPEKVEDATEPKYKAISKRAGGYLEDWWETLEKEAGNAKQAKALKRDPDEALPERPAKRSRAGSEKPSGSSLSQAQ--LKSAIENGTLAKMTVAQLKDVLGAKGLSTSGKKADLVERIEE 639          
BLAST of mRNA_M-pyrifera_M_contig80682.18886.1 vs. uniprot
Match: A0A022W796_TRIRU (ATP-dependent DNA helicase II subunit 1 n=3 Tax=Trichophyton TaxID=5550 RepID=A0A022W796_TRIRU)

HSP 1 Score: 59.3 bits (142), Expect = 2.600e-7
Identity = 60/192 (31.25%), Postives = 86/192 (44.79%), Query Frame = 1
Query:    1 IPWADDLRRVTIPTIEPPTQDAIQAARTLVRKAPLGFAA-GPGTFANPQLAAFHAVAEAILLGEWDISLDNIRKHAPDETLPD-PALPARVKDAAIALRE-------ATGLPEPGV------PPPKKTALGTKRARPKPTAGELEDAGRCVKAARKEGTLKKLTVPQLKDGLRALDLPVSGKKADLIARLEE 531
            +P+ADD+R+             I   R ++R+  L  A   P  + NP L   + + +A+ L E      ++ +   D+T P   A+  R  D  I   E       A    +P        P P    +  + A  K    ELED    +KA  ++GTL KLTV  LKD L +  LP SGKKADL+ R+EE
Sbjct:   76 LPYADDIRQNPETNHITAPDSLINKMRPIIRQLQLQNAQYDPRRYPNPSLQWHYKILQALALEE------DLPEKPEDKTKPKYKAIDKRTGDLVIEWGEELEAQYRALEKSQPATSTLVKRPAPSAKEIKEEPASKKAKTEELED----IKAHYEKGTLNKLTVAVLKDFLTSHSLPTSGKKADLVERVEE 257          
BLAST of mRNA_M-pyrifera_M_contig80682.18886.1 vs. uniprot
Match: A0A420YG66_9PEZI (ATP-dependent DNA helicase II subunit 1 n=1 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420YG66_9PEZI)

HSP 1 Score: 59.3 bits (142), Expect = 4.810e-7
Identity = 64/202 (31.68%), Postives = 89/202 (44.06%), Query Frame = 1
Query:    1 IPWADDLRRVTIPTIEPPTQDAIQAARTLVRKAPLGFAA-GPGTFANPQLAAFHAVAEAILLGEWDISLDNIRKHAPDETLPD-PALPARVKD-----AAIALREATGLP--------------EPGVPPPKKTALGTKRARPKPTAGELEDAGRCVKAARKEGTLKKLTVPQLKDGLRALDLPVSGKKADLIARLEEAIPE 543
            +P+ADDLR V +      + + I   R +++   L  A   P  + NP L   + + +AI L E       + +   D T+P   A+  RV             EA GL               E G  P KK     K    K  AG + +A   +KAA    TLKK+TV +LKD L    +  +GKKADL+ARLEE + E
Sbjct:  466 LPFADDLRNVDLAPTPRCSDNLINQMRKVIQNLQLPKAIYNPMKYPNPTLQWHYRIIQAIALEE------EVPEEPDDSTIPRYRAINKRVGGYLAEWTEAVAEEAKGLQGSRAVKREMDEGDDEDGPRPAKKAKAVPKE---KKLAGAMNNAQ--LKAAADNDTLKKMTVVELKDVLAGKGVSTAGKKADLVARLEEWVEE 656          
BLAST of mRNA_M-pyrifera_M_contig80682.18886.1 vs. uniprot
Match: E4V2Y0_ARTGP (ATP-dependent DNA helicase II subunit 1 n=2 Tax=Arthrodermataceae TaxID=34384 RepID=E4V2Y0_ARTGP)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-6
Identity = 61/193 (31.61%), Postives = 92/193 (47.67%), Query Frame = 1
Query:    1 IPWADDLRR-VTIPTIEPPTQDAIQAARTLVRKAPLGFAA-GPGTFANPQLAAFHAVAEAILLGEWDISLDNIRKHAPDETLPD-PALPARVKDAAI-----------ALREATGLPEPGVPPPKKTALGTKR--ARPKPTAGELEDAGRCVKAARKEGTLKKLTVPQLKDGLRALDLPVSGKKADLIARLEE 531
            +P+ADD+R+   +  I  P    +   RT++++  L      P  + NP L   + + +A+ L E      ++ + A D+T+P   A+  R  +  I           AL ++  +    V  P   A G K   A  +    E ED    +KA  ++GTL KLTV  LKD L A  LP SGKKADL+ R+EE
Sbjct:  461 LPFADDIRQNPELNHISAP-DSLVDKMRTIIQQLQLPKGQFDPHRYPNPSLQWHYRILQALALDE------DVPEQAEDKTIPKYKAIDKRAGELVIEWGEELESQYRALEKSQPVTSTLVKRPAPGAKGVKEEPASKRAKTEEHED----IKAYYEKGTLNKLTVAVLKDFLIAHSLPASGKKADLVERVEE 642          
BLAST of mRNA_M-pyrifera_M_contig80682.18886.1 vs. uniprot
Match: A0A024G9C6_9STRA (SAP domain-containing protein n=7 Tax=Albugo candida TaxID=65357 RepID=A0A024G9C6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-6
Identity = 58/196 (29.59%), Postives = 91/196 (46.43%), Query Frame = 1
Query:    1 IPWADDLRRVTIPTIEPPTQD--AIQAARTLVRKAPLGFAAGPGTFANPQLAAFHAVAEAILLGEWDISLDNIRKHAPDETLPDPALPAR--VKDAAIALREATGLPEPGVPPPKKTALGTKRARPKP----------------TAGELEDAGRCVKAARKEGTLKKLTVPQLKDGLRALDLPVSGKKADLIARLE 528
            +P+ DD+R + +   E PT D  A+  A T++ K  L   A    F NP+L   +A  +A+ L E ++  D     A D TLPD A  A+  V+DA    +EA G         K+ +    R + KP                +  ++ D G+  +   K  T ++ TV +L+  LR    P SG+KA+L+ R+E
Sbjct:  450 LPYLDDIRDIRVDNHEIPTVDKEAVNLAMTMIEKLEL---ADVPRFENPELQKHYASIQALALNEEELEYD----EAHDSTLPDAAGFAQEDVQDAIERFKEAFGAMS-DTAETKRKSKSASRMKEKPIKRAKRIDSIDTQSDLSPSQMFDLGKWREMVEKNTTGRQ-TVKELQAFLRFHSQPTSGRKAELVDRIE 636          
BLAST of mRNA_M-pyrifera_M_contig80682.18886.1 vs. uniprot
Match: A0A0N1HX97_9EURO (ATP-dependent DNA helicase II subunit 1 n=1 Tax=Phialophora attinorum TaxID=1664694 RepID=A0A0N1HX97_9EURO)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-6
Identity = 60/199 (30.15%), Postives = 93/199 (46.73%), Query Frame = 1
Query:    1 IPWADDLRRVTIPTIEPP---TQDAIQAARTLVRKAPLGFAAG---PGTFANPQLAAFHAVAEAILLGEWDISLDNIRKHAPDETLPD-PALPARVKDAAIALREA--TGLPEPGVPPPKKTALGTKRARPKPTAGELEDAGRCVKAARK----EGTLKKL---------TVPQLKDGLRALDLPVSGKKADLIARLEE 531
            +P+ADD+R+   PT+  P   +   + A R ++++  L    G   P  +ANP L   + + +A+ L E      ++     D+TLP    +  R+ + AIA   A  T   +     P+  A G+KRA P    G      + VK        EG ++ L         TV QLK+   A  LPV+GKKADL+ R+E+
Sbjct:  489 LPFADDIRQ-NPPTLRTPPVASDSLVDAMRPMIQQ--LNLPKGTYDPTKYANPSLQWHYRILQALALDE------DVPSKPEDKTLPKYKQIDKRIGNEAIAWGRALETEYNQFTADNPEAVATGSKRAMPGQNGGSRVGEAKKVKTDSSQRLDEGQMRNLFEKQKLNSLTVAQLKEFCTAKGLPVAGKKADLVERIEQ 678          
BLAST of mRNA_M-pyrifera_M_contig80682.18886.1 vs. uniprot
Match: A0A8H8IQC0_9AGAM (ATP-dependent DNA helicase II subunit 1 n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8IQC0_9AGAM)

HSP 1 Score: 57.4 bits (137), Expect = 2.190e-6
Identity = 62/186 (33.33%), Postives = 92/186 (49.46%), Query Frame = 1
Query:    1 IPWADDLRRVTIPTIEPPTQDAIQAARTLVRKAPLGFAAG--PGTFANPQLAAFHAVAEAILLGEWDISLDNIRKHAPDETLPDPALP---ARVKDAAI---ALREATGL-PEPGVPPPKKTALGTKRARPKPTAGELEDAGRCVKAARKEGTLKKLTVPQLKDGLRALDLPVSGKKADLIARLEE 531
            +P+ADD+R+ T+      + +  +AA  ++ +  L ++AG  P    NP LA  +   +A   GE         ++ P+E   D + P   A  K A     A REA    PE     P+ TA GTKR      AG +++    V+A   + TL KLTV QLK  L+A   P SG+K DLI R+++
Sbjct:  469 LPFADDIRQPTVEKSAHCSPELRKAASNIIER--LKYSAGYDPEAIPNPSLALHYGFLQAEAFGE---------EYNPEEDFNDRSAPRFRAIHKKAGSYMDAWREALNEDPEAAEVAPEPTA-GTKRK-----AGAVDEV--IVRAHFDDDTLNKLTVEQLKTYLKAHSQPYSGRKNDLIERVQD 635          
BLAST of mRNA_M-pyrifera_M_contig80682.18886.1 vs. uniprot
Match: UPI000C04D3EE (X-ray repair cross-complementing protein 6-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C04D3EE)

HSP 1 Score: 57.0 bits (136), Expect = 2.930e-6
Identity = 55/184 (29.89%), Postives = 83/184 (45.11%), Query Frame = 1
Query:    1 IPWADDLRRVTIPTIEPPTQDAIQAARTLVRKAPLGFAAGPGTFANPQLAAFHAVAEAILLGEWDISLDNIRKHAPDET--LPDPALPARVKDAAIALREATGLPEP-GVPPPKKTALGTKRARPKPTAGELEDAGRCVKAARKEGT----LKKLTVPQLKDGLRALDLPVSGKKADLIARLEE 531
            +P+ DDLR++        T + +  A+ +++K  LGF     +F NP L   +   EA+ L           +  P+E   L +P + A  + A  A+RE   +  P G  P  K A   K A     A +    G  V+   +E      L KLTVP LKD ++A  +    KKADLI  ++E
Sbjct:  436 LPFTDDLRKLKYEETPKATTEQVNKAKEVIKKLTLGFDCS--SFENPSLQKHYKNLEALALD----------RDEPEEVTDLTEPKVEAIERKAGEAIREFKDIVFPDGYNPDAKPAPKRKAADSSGGAAKKSRPGDGVEVDMREEAQRDRLSKLTVPVLKDFVKAAGIKCGSKKADLIEAIKE 607          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80682.18886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A835ZF42_9STRA3.060e-836.96SPOC like C-terminal domain-containing protein n=1... [more]
A0A812ZDG9_9DINO7.530e-832.84XRCC6 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A0B7JQU0_BIOOC1.040e-729.69ATP-dependent DNA helicase II subunit 1 n=2 Tax=Bi... [more]
A0A022W796_TRIRU2.600e-731.25ATP-dependent DNA helicase II subunit 1 n=3 Tax=Tr... [more]
A0A420YG66_9PEZI4.810e-731.68ATP-dependent DNA helicase II subunit 1 n=1 Tax=Co... [more]
E4V2Y0_ARTGP1.190e-631.61ATP-dependent DNA helicase II subunit 1 n=2 Tax=Ar... [more]
A0A024G9C6_9STRA1.190e-629.59SAP domain-containing protein n=7 Tax=Albugo candi... [more]
A0A0N1HX97_9EURO1.630e-630.15ATP-dependent DNA helicase II subunit 1 n=1 Tax=Ph... [more]
A0A8H8IQC0_9AGAM2.190e-633.33ATP-dependent DNA helicase II subunit 1 n=2 Tax=Ce... [more]
UPI000C04D3EE2.930e-629.89X-ray repair cross-complementing protein 6-like n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80682contigM-pyrifera_M_contig80682:4..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.2
Seed ortholog evalue4.6e-09
Seed eggNOG ortholog160860.XP_007342158.1
Preferred nameKU70
KEGG koko:K10884
KEGG Pathwayko03450,map03450
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000228,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005720,GO:0005724,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006333,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008156,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0012505,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0030466,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031933,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032207,GO:0032208,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0040029,GO:0042162,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043564,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045910,GO:0045934,GO:0045950,GO:0046483,GO:0048239,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071704,GO:0071840,GO:0072695,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097551,GO:0097552,GO:0097695,GO:0098687,GO:0099114,GO:0110026,GO:0110027,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990421,GO:2000104,GO:2000112,GO:2000113,GO:2001141,GO:2001251
EggNOG free text desc.Ku DNA-binding complex Ku70 subunit
EggNOG OGs227MK@155619,38BYP@33154,3H0GU@355688,3NW54@4751,3UZ9M@5204,KOG2327@1,KOG2327@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko03400
Exons1
Model size549
Cds size549
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.9541829-CDS-M-pyrifera_M_contig80682:3..5521622816711.9541829-CDS-M-pyrifera_M_contig80682:3..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80682 4..552 +
1692278134.803164-CDS-M-pyrifera_M_contig80682:3..5521692278134.803164-CDS-M-pyrifera_M_contig80682:3..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80682 4..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80682.18886.1prot_M-pyrifera_M_contig80682.18886.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80682 4..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80682.18886.1

>prot_M-pyrifera_M_contig80682.18886.1 ID=prot_M-pyrifera_M_contig80682.18886.1|Name=mRNA_M-pyrifera_M_contig80682.18886.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
IPWADDLRRVTIPTIEPPTQDAIQAARTLVRKAPLGFAAGPGTFANPQLA
AFHAVAEAILLGEWDISLDNIRKHAPDETLPDPALPARVKDAAIALREAT
GLPEPGVPPPKKTALGTKRARPKPTAGELEDAGRCVKAARKEGTLKKLTV
PQLKDGLRALDLPVSGKKADLIARLEEAIPEG*
back to top

mRNA from alignment at M-pyrifera_M_contig80682:4..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80682.18886.1 ID=mRNA_M-pyrifera_M_contig80682.18886.1|Name=mRNA_M-pyrifera_M_contig80682.18886.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig80682:4..552+ (Macrocystis pyrifera P11B4 male)
ATCCCTTGGGCTGATGACCTGCGAAGAGTCACAATCCCAACCATAGAACC ACCAACACAAGATGCTATCCAGGCAGCTCGTACTTTGGTCCGAAAAGCAC CACTTGGATTTGCAGCAGGGCCTGGGACGTTTGCAAATCCCCAACTCGCT GCTTTTCATGCTGTTGCCGAAGCAATCTTGTTAGGAGAGTGGGATATCAG CCTTGACAACATCCGAAAACACGCTCCTGATGAAACCTTGCCAGACCCTG CCCTACCTGCTCGTGTCAAGGACGCCGCTATTGCTTTGCGAGAAGCCACA GGTCTTCCAGAACCAGGCGTACCACCACCAAAGAAAACTGCACTCGGAAC GAAGAGGGCGAGACCAAAACCCACAGCTGGAGAATTGGAAGACGCTGGGA GGTGTGTGAAAGCGGCCAGGAAAGAAGGAACGCTAAAGAAACTCACCGTC CCACAACTGAAAGATGGTCTCCGAGCCCTGGACCTCCCTGTCTCTGGCAA AAAGGCAGACCTGATTGCAAGGCTCGAAGAAGCGATCCCAGAAGGATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig80682:4..552+

>mRNA_M-pyrifera_M_contig80682.18886.1 ID=mRNA_M-pyrifera_M_contig80682.18886.1|Name=mRNA_M-pyrifera_M_contig80682.18886.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig80682:4..552+ (Macrocystis pyrifera P11B4 male)
ATCCCTTGGGCTGATGACCTGCGAAGAGTCACAATCCCAACCATAGAACC
ACCAACACAAGATGCTATCCAGGCAGCTCGTACTTTGGTCCGAAAAGCAC
CACTTGGATTTGCAGCAGGGCCTGGGACGTTTGCAAATCCCCAACTCGCT
GCTTTTCATGCTGTTGCCGAAGCAATCTTGTTAGGAGAGTGGGATATCAG
CCTTGACAACATCCGAAAACACGCTCCTGATGAAACCTTGCCAGACCCTG
CCCTACCTGCTCGTGTCAAGGACGCCGCTATTGCTTTGCGAGAAGCCACA
GGTCTTCCAGAACCAGGCGTACCACCACCAAAGAAAACTGCACTCGGAAC
GAAGAGGGCGAGACCAAAACCCACAGCTGGAGAATTGGAAGACGCTGGGA
GGTGTGTGAAAGCGGCCAGGAAAGAAGGAACGCTAAAGAAACTCACCGTC
CCACAACTGAAAGATGGTCTCCGAGCCCTGGACCTCCCTGTCTCTGGCAA
AAAGGCAGACCTGATTGCAAGGCTCGAAGAAGCGATCCCAGAAGGATGAA
TCCCTTGGGCTGATGACCTGCGAAGAGTCACAATCCCAACCATAGAACCA
CCAACACAAGATGCTATCCAGGCAGCTCGTACTTTGGTCCGAAAAGCACC
ACTTGGATTTGCAGCAGGGCCTGGGACGTTTGCAAATCCCCAACTCGCTG
CTTTTCATGCTGTTGCCGAAGCAATCTTGTTAGGAGAGTGGGATATCAGC
CTTGACAACATCCGAAAACACGCTCCTGATGAAACCTTGCCAGACCCTGC
CCTACCTGCTCGTGTCAAGGACGCCGCTATTGCTTTGCGAGAAGCCACAG
GTCTTCCAGAACCAGGCGTACCACCACCAAAGAAAACTGCACTCGGAACG
AAGAGGGCGAGACCAAAACCCACAGCTGGAGAATTGGAAGACGCTGGGAG
GTGTGTGAAAGCGGCCAGGAAAGAAGGAACGCTAAAGAAACTCACCGTCC
CACAACTGAAAGATGGTCTCCGAGCCCTGGACCTCCCTGTCTCTGGCAAA
AAGGCAGACCTGATTGCAAGGCTCGAAGAAGCGATCCCAGAAGGATGA
back to top