mRNA_M-pyrifera_M_contig80661.18881.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80661.18881.1
Unique NamemRNA_M-pyrifera_M_contig80661.18881.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80661.18881.1 vs. uniprot
Match: A0A7S4I8M9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I8M9_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 1.110e-5
Identity = 50/201 (24.88%), Postives = 99/201 (49.25%), Query Frame = 1 
Query:   22 DRFGSTPL-MKASLFGHVEVVELLIEAKALLNAEDVEGFAXXXXXXXXXXXXXXXXXL-TSGARC-LPTAEGDSPLAMLLPNYRQVSTKALFTKILA-----RTDLNERYGRHRQSLLHVILMSYSGDHCARRIRILLKEDSTDVNVVNRMGQSPIFYAAHFGELAVVQRLLKAGAKVAIKDKLGNTALHYCSSRPVAEVL 600
            D +  TPL +   +  ++E+ +LLI+ KA +N ++  G+                  L T G    +   +G S L  L+ +    + +A + ++L      R D++ +  +H +S LH   +   G+  A  ++ LLK +   +N++N++G++P+ YA    +  ++Q LL+ GA  ++K + G TA    SS  +A ++
Sbjct:   29 DNYHQTPLHLACGVAANLEITKLLIKKKADVNVQERNGWTPLHCAANEGKLKICEMLLNTDGIDVGILNKDGTSVLHYLVRSNPDTADQAQYEEVLRLYIDKRGDIDSQ-SKHGESALHQSCLR--GNITA--VKFLLK-NKAQINILNKIGETPLHYAVRASQKEIIQLLLEYGADTSLKSEDG-TAFDMASSLEIANLI 222
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BLAST of mRNA_M-pyrifera_M_contig80661.18881.1 vs. uniprot
Match: UPI001EAFCD00 (ankyrin repeat domain-containing protein 50-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFCD00)

HSP 1 Score: 55.5 bits (132), Expect = 1.240e-5
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:  361 LMSYSGDHCARRIRILLKEDSTDVNVVNRMGQSPIFYAAHFGELAVVQRLLKAGAKVAIKDKLGNTALHYCSSRPVAEVL 600
            L S S +    R+ ++L +  TD+N  +++G++P+ +AA  G   VV+ L+  GAKV+I D+ GN  LH        EV+
Sbjct:   11 LHSASEEGDLSRVEVILSQGGTDINCKDKIGRTPVMWAAGNGHKEVVELLVSKGAKVSIVDRFGNNILHSAGRGGDVEVV 90
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BLAST of mRNA_M-pyrifera_M_contig80661.18881.1 vs. uniprot
Match: UPI00201F4CB4 (ankyrin repeat domain-containing protein 50-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F4CB4)

HSP 1 Score: 55.5 bits (132), Expect = 1.350e-5
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:  361 LMSYSGDHCARRIRILLKEDSTDVNVVNRMGQSPIFYAAHFGELAVVQRLLKAGAKVAIKDKLGNTALHYCSSRPVAEVL 600
            L S S +    R+ ++L +  TD+N  +++G++P+ +AA  G   VV+ L+  GAKV+I D+ GN  LH        EV+
Sbjct:  123 LHSASEEGDLSRVEVILSQGGTDINCKDKIGRTPVMWAAGNGHKEVVELLVSKGAKVSIVDRFGNNILHSAGRGGDVEVV 202
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BLAST of mRNA_M-pyrifera_M_contig80661.18881.1 vs. uniprot
Match: A0A6J8E051_MYTCO (Uncharacterized protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8E051_MYTCO)

HSP 1 Score: 53.5 bits (127), Expect = 2.010e-5
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:  406 LLKEDSTDVNVVNRMGQSPIFYAAHFGELAVVQRLLKAGAKVAIKDKLGNTALHYCSSRPVAEVL 600
            LL+    D+N  ++ G++ + YAA  G+  +V+ LL+ GAK  +KDK GNT LH+C    V ++L
Sbjct:   26 LLESRKFDLNKRDKQGRTLLHYAACRGQYEIVELLLEQGAKAHLKDKNGNTPLHWCGHADVIDLL 90
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BLAST of mRNA_M-pyrifera_M_contig80661.18881.1 vs. uniprot
Match: UPI001EE611A2 (ankyrin repeat domain-containing protein 17-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE611A2)

HSP 1 Score: 54.3 bits (129), Expect = 3.130e-5
Identity = 50/194 (25.77%), Postives = 83/194 (42.78%), Query Frame = 1 
Query:   13 DSMDRFGSTPLMKASLFGHVEVVELLIEAKALLNAEDVEGFAXXXXXXXXXXXXXXXXXLTSGARCLPTAEGDSPLAMLLPNYRQVSTKALFTKILARTDLNERYGRHRQSLLHVILMSYSGD---HCARR------IRILLKEDSTDVNVVNRMGQSPIFYAAHFGELAVVQRLLKAGAKVAIKDKLGNTALH 567
            D  +  G TP+M A+  GH EVVELL+   A L+  D  GF                  L+                ML  N R V  +     + A +   +       +   V L+  +GD   HCA R      ++ +L ++  D++ +    ++P+  A  +G   VV+ L+K GA ++++DK+G+  LH
Sbjct:  107 DCNEWIGRTPVMWAAGGGHTEVVELLVGKGAKLSLVDSFGFNILHSACHGGELEAVKYVLSQ--------------TMLDINGR-VQCRRTAVMLAAESGHKDVVELLVDTGADVSLVDETGDNILHCACRGGDVEVVKYILSQNMVDIDSLGHEKKTPVMLAGQYGHKEVVEVLVKHGANLSLRDKVGDNILH 285
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80661.18881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S4I8M9_9EUKA1.110e-524.88Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
UPI001EAFCD001.240e-535.00ankyrin repeat domain-containing protein 50-like n... [more]
UPI00201F4CB41.350e-535.00ankyrin repeat domain-containing protein 50-like n... [more]
A0A6J8E051_MYTCO2.010e-540.00Uncharacterized protein n=2 Tax=Mytilus TaxID=6548... [more]
UPI001EE611A23.130e-525.77ankyrin repeat domain-containing protein 17-like n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80661contigM-pyrifera_M_contig80661:1..600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size582
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.763551-CDS-M-pyrifera_M_contig80661:0..5821622816711.763551-CDS-M-pyrifera_M_contig80661:0..582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80661 1..582 -
1692278134.7136357-CDS-M-pyrifera_M_contig80661:0..5821692278134.7136357-CDS-M-pyrifera_M_contig80661:0..582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80661 1..582 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.774784-UTR-M-pyrifera_M_contig80661:582..6001622816711.774784-UTR-M-pyrifera_M_contig80661:582..600Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80661 583..600 -
1692278134.7255726-UTR-M-pyrifera_M_contig80661:582..6001692278134.7255726-UTR-M-pyrifera_M_contig80661:582..600Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80661 583..600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80661.18881.1prot_M-pyrifera_M_contig80661.18881.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80661 1..582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80661.18881.1

>prot_M-pyrifera_M_contig80661.18881.1 ID=prot_M-pyrifera_M_contig80661.18881.1|Name=mRNA_M-pyrifera_M_contig80661.18881.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
MDRFGSTPLMKASLFGHVEVVELLIEAKALLNAEDVEGFAPLHLALLQGH
TEVAMLLLTSGARCLPTAEGDSPLAMLLPNYRQVSTKALFTKILARTDLN
ERYGRHRQSLLHVILMSYSGDHCARRIRILLKEDSTDVNVVNRMGQSPIF
YAAHFGELAVVQRLLKAGAKVAIKDKLGNTALHYCSSRPVAEVL
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mRNA from alignment at M-pyrifera_M_contig80661:1..600-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80661.18881.1 ID=mRNA_M-pyrifera_M_contig80661.18881.1|Name=mRNA_M-pyrifera_M_contig80661.18881.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig80661:1..600- (Macrocystis pyrifera P11B4 male)
GGCGCGCAGAAGGACTCCATGGACCGCTTCGGCTCCACTCCTCTGATGAA
GGCGAGCCTCTTCGGCCACGTCGAAGTGGTCGAGCTCCTCATCGAGGCCA
AGGCCCTGCTCAACGCGGAGGATGTGGAGGGATTTGCCCCCCTCCATCTG
GCGCTCCTCCAAGGCCACACGGAGGTGGCGATGCTGCTGCTCACCAGCGG
CGCTCGCTGCCTGCCCACTGCCGAGGGCGACTCTCCGTTGGCGATGCTGC
TGCCCAACTACCGGCAGGTCAGCACCAAGGCCCTCTTCACGAAGATTCTC
GCCCGCACTGACCTGAACGAACGCTATGGTCGGCACCGGCAGTCGCTCTT
GCATGTCATTCTGATGTCGTACTCGGGCGATCATTGTGCTAGGAGGATTC
GAATATTGCTCAAGGAAGATTCCACCGATGTCAACGTCGTCAACCGCATG
GGCCAGTCGCCCATCTTCTATGCTGCCCACTTTGGCGAGCTGGCGGTTGT
GCAGAGGCTGCTGAAGGCGGGGGCTAAGGTGGCAATCAAGGACAAGCTCG
GCAACACTGCCTTGCACTATTGCTCTTCTCGGCCAGTGGCAGAGGTGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80661:1..600-

>mRNA_M-pyrifera_M_contig80661.18881.1 ID=mRNA_M-pyrifera_M_contig80661.18881.1|Name=mRNA_M-pyrifera_M_contig80661.18881.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig80661:1..600- (Macrocystis pyrifera P11B4 male)
ATGGACCGCTTCGGCTCCACTCCTCTGATGAAGGCGAGCCTCTTCGGCCA
CGTCGAAGTGGTCGAGCTCCTCATCGAGGCCAAGGCCCTGCTCAACGCGG
AGGATGTGGAGGGATTTGCCCCCCTCCATCTGGCGCTCCTCCAAGGCCAC
ACGGAGGTGGCGATGCTGCTGCTCACCAGCGGCGCTCGCTGCCTGCCCAC
TGCCGAGGGCGACTCTCCGTTGGCGATGCTGCTGCCCAACTACCGGCAGG
TCAGCACCAAGGCCCTCTTCACGAAGATTCTCGCCCGCACTGACCTGAAC
GAACGCTATGGTCGGCACCGGCAGTCGCTCTTGCATGTCATTCTGATGTC
GTACTCGGGCGATCATTGTGCTAGGAGGATTCGAATATTGCTCAAGGAAG
ATTCCACCGATGTCAACGTCGTCAACCGCATGGGCCAGTCGCCCATCTTC
TATGCTGCCCACTTTGGCGAGCTGGCGGTTGTGCAGAGGCTGCTGAAGGC
GGGGGCTAAGGTGGCAATCAAGGACAAGCTCGGCAACACTGCCTTGCACT
ATTGCTCTTCTCGGCCAGTGGCAGAGGTGCTGATGGACCGCTTCGGCTCC
ACTCCTCTGATGAAGGCGAGCCTCTTCGGCCACGTCGAAGTGGTCGAGCT
CCTCATCGAGGCCAAGGCCCTGCTCAACGCGGAGGATGTGGAGGGATTTG
CCCCCCTCCATCTGGCGCTCCTCCAAGGCCACACGGAGGTGGCGATGCTG
CTGCTCACCAGCGGCGCTCGCTGCCTGCCCACTGCCGAGGGCGACTCTCC
GTTGGCGATGCTGCTGCCCAACTACCGGCAGGTCAGCACCAAGGCCCTCT
TCACGAAGATTCTCGCCCGCACTGACCTGAACGAACGCTATGGTCGGCAC
CGGCAGTCGCTCTTGCATGTCATTCTGATGTCGTACTCGGGCGATCATTG
TGCTAGGAGGATTCGAATATTGCTCAAGGAAGATTCCACCGATGTCAACG
TCGTCAACCGCATGGGCCAGTCGCCCATCTTCTATGCTGCCCACTTTGGC
GAGCTGGCGGTTGTGCAGAGGCTGCTGAAGGCGGGGGCTAAGGTGGCAAT
CAAGGACAAGCTCGGCAACACTGCCTTGCACTATTGCTCTTCTCGGCCAG
TGGCAGAGGTGCTG
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