mRNA_M-pyrifera_M_contig80660.18880.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80660.18880.1
Unique NamemRNA_M-pyrifera_M_contig80660.18880.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80660.18880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80660contigM-pyrifera_M_contig80660:205..819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80660.18880.1prot_M-pyrifera_M_contig80660.18880.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80660 355..786 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.7042897-UTR-M-pyrifera_M_contig80660:204..3541622816711.7042897-UTR-M-pyrifera_M_contig80660:204..354Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80660 205..354 +
1692278134.6708648-UTR-M-pyrifera_M_contig80660:204..3541692278134.6708648-UTR-M-pyrifera_M_contig80660:204..354Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80660 205..354 +
1622816711.732886-UTR-M-pyrifera_M_contig80660:786..8191622816711.732886-UTR-M-pyrifera_M_contig80660:786..819Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80660 787..819 +
1692278134.7011707-UTR-M-pyrifera_M_contig80660:786..8191692278134.7011707-UTR-M-pyrifera_M_contig80660:786..819Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80660 787..819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.718848-CDS-M-pyrifera_M_contig80660:354..7861622816711.718848-CDS-M-pyrifera_M_contig80660:354..786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80660 355..786 +
1692278134.6829584-CDS-M-pyrifera_M_contig80660:354..7861692278134.6829584-CDS-M-pyrifera_M_contig80660:354..786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80660 355..786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80660.18880.1

>prot_M-pyrifera_M_contig80660.18880.1 ID=prot_M-pyrifera_M_contig80660.18880.1|Name=mRNA_M-pyrifera_M_contig80660.18880.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
MKALLLYVGDLLPLRTSFEKRIINDNRRRHIVGYYSFFRFLSFFFLKMPQ
CHQRRHSCPRLLTCRKNKKKSAENEPIPQMKTHAYVGDRLPAIKKLQNAP
MPPMERLRPIRTEFKKKLQNALFACHRLIKYWRLATIITPRGG*
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mRNA from alignment at M-pyrifera_M_contig80660:205..819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80660.18880.1 ID=mRNA_M-pyrifera_M_contig80660.18880.1|Name=mRNA_M-pyrifera_M_contig80660.18880.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig80660:205..819+ (Macrocystis pyrifera P11B4 male)
GGGGTGCACCGTTTTGCCTTTGCCGCGACCATGACACGATGACGGCCGAC
CACCGTTACGTACGAGCTTACAAAATGTACTTTCTGAATCGGCAACTTAT
TTACTTGCTTACCGACACAAACAAACACACATCAATGCCACAGAGATGAA
ATGAAGGCCCTACTTCTGTATGTTGGCGACCTATTACCGCTACGTACAAG
CTTTGAAAAACGCATCATCAATGACAACCGACGGAGACACATCGTCGGCT
ACTACAGTTTTTTTCGTTTTCTCTCTTTTTTTTTTCTGAAAATGCCTCAA
TGCCACCAACGGAGACACTCATGTCCGCGATTATTAACGTGCCGAAAAAA
CAAAAAAAAAAGTGCTGAAAATGAACCAATTCCACAGATGAAGACACATG
CATATGTCGGCGACAGATTACCCGCAATAAAAAAGCTACAAAATGCACCA
ATGCCACCCATGGAGAGATTACGACCGATTCGTACCGAGTTTAAAAAAAA
ACTACAAAATGCACTATTTGCCTGCCACAGGCTGATAAAATATTGGCGAC
TAGCCACCATTATTACACCGAGAGGGGGATAGGCCACCGTCACAACACCT
GGGGGGGAAAAGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80660:205..819+

>mRNA_M-pyrifera_M_contig80660.18880.1 ID=mRNA_M-pyrifera_M_contig80660.18880.1|Name=mRNA_M-pyrifera_M_contig80660.18880.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig80660:205..819+ (Macrocystis pyrifera P11B4 male)
ATGAAGGCCCTACTTCTGTATGTTGGCGACCTATTACCGCTACGTACAAG
CTTTGAAAAACGCATCATCAATGACAACCGACGGAGACACATCGTCGGCT
ACTACAGTTTTTTTCGTTTTCTCTCTTTTTTTTTTCTGAAAATGCCTCAA
TGCCACCAACGGAGACACTCATGTCCGCGATTATTAACGTGCCGAAAAAA
CAAAAAAAAAAGTGCTGAAAATGAACCAATTCCACAGATGAAGACACATG
CATATGTCGGCGACAGATTACCCGCAATAAAAAAGCTACAAAATGCACCA
ATGCCACCCATGGAGAGATTACGACCGATTCGTACCGAGTTTAAAAAAAA
ACTACAAAATGCACTATTTGCCTGCCACAGGCTGATAAAATATTGGCGAC
TAGCCACCATTATTACACCGAGAGGGGGATAGATGAAGGCCCTACTTCTG
TATGTTGGCGACCTATTACCGCTACGTACAAGCTTTGAAAAACGCATCAT
CAATGACAACCGACGGAGACACATCGTCGGCTACTACAGTTTTTTTCGTT
TTCTCTCTTTTTTTTTTCTGAAAATGCCTCAATGCCACCAACGGAGACAC
TCATGTCCGCGATTATTAACGTGCCGAAAAAACAAAAAAAAAAGTGCTGA
AAATGAACCAATTCCACAGATGAAGACACATGCATATGTCGGCGACAGAT
TACCCGCAATAAAAAAGCTACAAAATGCACCAATGCCACCCATGGAGAGA
TTACGACCGATTCGTACCGAGTTTAAAAAAAAACTACAAAATGCACTATT
TGCCTGCCACAGGCTGATAAAATATTGGCGACTAGCCACCATTATTACAC
CGAGAGGGGGATAG
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