mRNA_M-pyrifera_M_contig8066.18879.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8066.18879.1
Unique NamemRNA_M-pyrifera_M_contig8066.18879.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8066.18879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8066contigM-pyrifera_M_contig8066:10465..11044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size580
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.6539738-CDS-M-pyrifera_M_contig8066:10464..108031622816711.6539738-CDS-M-pyrifera_M_contig8066:10464..10803Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8066 10465..10803 +
1692278134.648305-CDS-M-pyrifera_M_contig8066:10464..108031692278134.648305-CDS-M-pyrifera_M_contig8066:10464..10803Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8066 10465..10803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.6660354-UTR-M-pyrifera_M_contig8066:10803..110441622816711.6660354-UTR-M-pyrifera_M_contig8066:10803..11044Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8066 10804..11044 +
1692278134.65987-UTR-M-pyrifera_M_contig8066:10803..110441692278134.65987-UTR-M-pyrifera_M_contig8066:10803..11044Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8066 10804..11044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8066.18879.1prot_M-pyrifera_M_contig8066.18879.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8066 10465..10803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8066.18879.1

>prot_M-pyrifera_M_contig8066.18879.1 ID=prot_M-pyrifera_M_contig8066.18879.1|Name=mRNA_M-pyrifera_M_contig8066.18879.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
LDEIFPQQPFHFVRPLWFWRKSAQKNRPRRCVLSLSLSLACYIYIPEPTA
STCYKQRTRYRKAYQKPYQEQSTPVKKKRSGQLTILSSKPFFKSTAQCSQ
SFNAPTYLPTNR*
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mRNA from alignment at M-pyrifera_M_contig8066:10465..11044+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8066.18879.1 ID=mRNA_M-pyrifera_M_contig8066.18879.1|Name=mRNA_M-pyrifera_M_contig8066.18879.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=580bp|location=Sequence derived from alignment at M-pyrifera_M_contig8066:10465..11044+ (Macrocystis pyrifera P11B4 male)
CTTGACGAGATTTTTCCACAGCAACCGTTTCATTTTGTGCGCCCCCTCTG
GTTTTGGAGAAAATCGGCTCAAAAAAATCGTCCCAGGCGGTGTGTGCTAT
CGCTATCGCTATCGCTAGCGTGTTATATATATATACCCGAACCAACGGCA
AGTACGTGTTACAAGCAGCGTACGCGATACCGAAAGGCATACCAAAAGCC
CTACCAAGAGCAAAGTACCCCCGTGAAAAAAAAAAGAAGCGGGCAGCTCA
CGATATTATCGTCAAAGCCTTTTTTTAAAAGCACTGCTCAATGCAGCCAA
TCATTCAACGCACCTACGTACCTGCCAACCAACCGTTAACCAACCGCGAA
ATGACAATCCGATTCACCTTTGATTATTTGGCGCGCAAGGTTTCTTTGAA
AAATCGCCACCAATCCTTGAAAAATCGCCACTAATCCCGATCCACGACAA
CATAACACGATAACACAAATCCCGGGGCAAACATGGACCCACCTGAAAGC
TGCCGCCGCGAAACAGCATACGACATATACCTTCTCTGAGTCTACAACCA
GTACTTGGTACGCCGATGACACCTGTCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8066:10465..11044+

>mRNA_M-pyrifera_M_contig8066.18879.1 ID=mRNA_M-pyrifera_M_contig8066.18879.1|Name=mRNA_M-pyrifera_M_contig8066.18879.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig8066:10465..11044+ (Macrocystis pyrifera P11B4 male)
CTTGACGAGATTTTTCCACAGCAACCGTTTCATTTTGTGCGCCCCCTCTG
GTTTTGGAGAAAATCGGCTCAAAAAAATCGTCCCAGGCGGTGTGTGCTAT
CGCTATCGCTATCGCTAGCGTGTTATATATATATACCCGAACCAACGGCA
AGTACGTGTTACAAGCAGCGTACGCGATACCGAAAGGCATACCAAAAGCC
CTACCAAGAGCAAAGTACCCCCGTGAAAAAAAAAAGAAGCGGGCAGCTCA
CGATATTATCGTCAAAGCCTTTTTTTAAAAGCACTGCTCAATGCAGCCAA
TCATTCAACGCACCTACGTACCTGCCAACCAACCGTTAACTTGACGAGAT
TTTTCCACAGCAACCGTTTCATTTTGTGCGCCCCCTCTGGTTTTGGAGAA
AATCGGCTCAAAAAAATCGTCCCAGGCGGTGTGTGCTATCGCTATCGCTA
TCGCTAGCGTGTTATATATATATACCCGAACCAACGGCAAGTACGTGTTA
CAAGCAGCGTACGCGATACCGAAAGGCATACCAAAAGCCCTACCAAGAGC
AAAGTACCCCCGTGAAAAAAAAAAGAAGCGGGCAGCTCACGATATTATCG
TCAAAGCCTTTTTTTAAAAGCACTGCTCAATGCAGCCAATCATTCAACGC
ACCTACGTACCTGCCAACCAACCGTTAA
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