mRNA_M-pyrifera_M_contig8066.18878.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8066.18878.1
Unique NamemRNA_M-pyrifera_M_contig8066.18878.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8066.18878.1 vs. uniprot
Match: D7G5N8_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.250e-15
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 2 
Query:    2 GTVDQSEGVLEEEQTEAGFLLTCVSYPLSDVHFAVVDEEDLP 127
            G+VDQSEGVLE+EQ +AGFLLTC+SYP SDVHFAVVDEEDLP
Sbjct:  255 GSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDLP 296
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BLAST of mRNA_M-pyrifera_M_contig8066.18878.1 vs. uniprot
Match: A0A835YL41_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL41_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.760e-7
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 2 
Query:    2 GTVDQSEGVLEEEQTEAGFLLTCVSYPLSDVHFAVVDEEDL 124
            G V+Q +GVLE++Q  AG +LTCVSYPLSD+ F V+ E++L
Sbjct:  191 GRVEQGDGVLEDDQIAAGLMLTCVSYPLSDLRFEVIGEDEL 231
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BLAST of mRNA_M-pyrifera_M_contig8066.18878.1 vs. uniprot
Match: A0A023H9P1_9STRA (Ferredoxin n=1 Tax=Asterionella formosa TaxID=210441 RepID=A0A023H9P1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.800e-6
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 2 
Query:    2 GTVDQSEGV-LEEEQTEAGFLLTCVSYPLSDVHFAVVDEEDL 124
            GTVDQSE   L+++Q EAGF+LTC++YP SD   AV  EE+L
Sbjct:   57 GTVDQSEQTFLDDDQVEAGFVLTCIAYPKSDCKIAVHQEEEL 98
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BLAST of mRNA_M-pyrifera_M_contig8066.18878.1 vs. uniprot
Match: FER1_PEA (Ferredoxin-1, chloroplastic n=1 Tax=Pisum sativum TaxID=3888 RepID=FER1_PEA)

HSP 1 Score: 50.4 bits (119), Expect = 1.000e-5
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:    2 GTVDQSEG-VLEEEQTEAGFLLTCVSYPLSDVHFAVVDEEDL 124
            G VDQS+G  L++EQ EAGF+LTCV+YP SDV      EEDL
Sbjct:  106 GEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147
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BLAST of mRNA_M-pyrifera_M_contig8066.18878.1 vs. uniprot
Match: UPI0019E05927 (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019E05927)

HSP 1 Score: 48.9 bits (115), Expect = 1.580e-5
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 2 
Query:    2 GTVDQSE-GVLEEEQTEAGFLLTCVSYPLSDVHFAVVDEEDL 124
            GTVDQS+   LE+EQ EAGF+LTCV+YP SD       EE+L
Sbjct:   57 GTVDQSDQAFLEDEQVEAGFILTCVAYPTSDCTVQTHQEENL 98
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BLAST of mRNA_M-pyrifera_M_contig8066.18878.1 vs. uniprot
Match: UPI001BEF5849 (ferredoxin n=1 Tax=Tsunamia transpacifica TaxID=1935457 RepID=UPI001BEF5849)

HSP 1 Score: 48.9 bits (115), Expect = 1.580e-5
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 2 
Query:    2 GTVDQSE-GVLEEEQTEAGFLLTCVSYPLSDVHFAVVDEEDL 124
            GTVDQS+   L++EQ EAGF+LTCV+YP SD   A   EE L
Sbjct:   57 GTVDQSDQSFLDDEQMEAGFVLTCVAYPTSDCTIATHQEEQL 98
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BLAST of mRNA_M-pyrifera_M_contig8066.18878.1 vs. uniprot
Match: A0A2D5MRV2_9BACT (Ferredoxin n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5MRV2_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 2.050e-5
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 2 
Query:    2 GTVDQSE-GVLEEEQTEAGFLLTCVSYPLSDVHFAVVDEEDL 124
            GTVDQSE   L+++Q  AGFLLTCVSYP SDV      EE+L
Sbjct:   53 GTVDQSEQSFLDDDQLAAGFLLTCVSYPTSDVIIESEKEEEL 94
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BLAST of mRNA_M-pyrifera_M_contig8066.18878.1 vs. uniprot
Match: FER1_APHFL (Ferredoxin-1 n=6 Tax=Nostocales TaxID=1161 RepID=FER1_APHFL)

HSP 1 Score: 48.5 bits (114), Expect = 2.180e-5
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:    2 GTVDQSE-GVLEEEQTEAGFLLTCVSYPLSDVHFAVVDEEDL 124
            GT+DQS+   L+++Q EAG++LTCV+YP SDV      EEDL
Sbjct:   56 GTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97
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BLAST of mRNA_M-pyrifera_M_contig8066.18878.1 vs. uniprot
Match: FER1_TRIV2 (Ferredoxin-1 n=7 Tax=Nostocales TaxID=1161 RepID=FER1_TRIV2)

HSP 1 Score: 48.5 bits (114), Expect = 2.230e-5
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:    2 GTVDQSE-GVLEEEQTEAGFLLTCVSYPLSDVHFAVVDEEDL 124
            GTVDQS+   L+++Q EAG++LTCV+YP SDV      EEDL
Sbjct:   57 GTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98
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BLAST of mRNA_M-pyrifera_M_contig8066.18878.1 vs. uniprot
Match: A0A3S1CAY1_ANAVA (Ferredoxin n=10 Tax=Nostocales TaxID=1161 RepID=A0A3S1CAY1_ANAVA)

HSP 1 Score: 48.5 bits (114), Expect = 2.230e-5
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:    2 GTVDQSE-GVLEEEQTEAGFLLTCVSYPLSDVHFAVVDEEDL 124
            GTVDQS+   L+++Q EAG++LTCV+YP SDV      EEDL
Sbjct:   57 GTVDQSDQSFLDDDQIEAGYVLTCVAYPASDVTIQTHKEEDL 98
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8066.18878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5N8_ECTSI3.250e-1585.71Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
A0A835YL41_9STRA1.760e-758.54Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A023H9P1_9STRA2.800e-659.52Ferredoxin n=1 Tax=Asterionella formosa TaxID=2104... [more]
FER1_PEA1.000e-561.90Ferredoxin-1, chloroplastic n=1 Tax=Pisum sativum ... [more]
UPI0019E059271.580e-559.522Fe-2S iron-sulfur cluster binding domain-containi... [more]
UPI001BEF58491.580e-559.52ferredoxin n=1 Tax=Tsunamia transpacifica TaxID=19... [more]
A0A2D5MRV2_9BACT2.050e-561.90Ferredoxin n=1 Tax=Verrucomicrobiales bacterium Ta... [more]
FER1_APHFL2.180e-554.76Ferredoxin-1 n=6 Tax=Nostocales TaxID=1161 RepID=F... [more]
FER1_TRIV22.230e-557.14Ferredoxin-1 n=7 Tax=Nostocales TaxID=1161 RepID=F... [more]
A0A3S1CAY1_ANAVA2.230e-557.14Ferredoxin n=10 Tax=Nostocales TaxID=1161 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8066contigM-pyrifera_M_contig8066:6021..6753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size263
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.608258-CDS-M-pyrifera_M_contig8066:6020..60721622816711.608258-CDS-M-pyrifera_M_contig8066:6020..6072Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8066 6021..6072 +
1692278134.6231415-CDS-M-pyrifera_M_contig8066:6020..60721692278134.6231415-CDS-M-pyrifera_M_contig8066:6020..6072Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8066 6021..6072 +
1622816711.6217089-CDS-M-pyrifera_M_contig8066:6543..67521622816711.6217089-CDS-M-pyrifera_M_contig8066:6543..6752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8066 6544..6752 +
1692278134.6377437-CDS-M-pyrifera_M_contig8066:6543..67521692278134.6377437-CDS-M-pyrifera_M_contig8066:6543..6752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8066 6544..6752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8066.18878.1prot_M-pyrifera_M_contig8066.18878.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8066 6021..6752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8066.18878.1

>prot_M-pyrifera_M_contig8066.18878.1 ID=prot_M-pyrifera_M_contig8066.18878.1|Name=mRNA_M-pyrifera_M_contig8066.18878.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
RDGGPKRGGFRRRANGSGLPADLRVLPAKRRSLRRRGRGRFTMTHQMKHT
RSHTWARRESNTLEREAALDWPRGERVFELLLAGLKG
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mRNA from alignment at M-pyrifera_M_contig8066:6021..6753+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8066.18878.1 ID=mRNA_M-pyrifera_M_contig8066.18878.1|Name=mRNA_M-pyrifera_M_contig8066.18878.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=733bp|location=Sequence derived from alignment at M-pyrifera_M_contig8066:6021..6753+ (Macrocystis pyrifera P11B4 male)
CGGGACGGTGGACCAAAGCGAGGGGGTTTTAGAAGAAGAGCAAACGGAAG
CGGTGAGAGTGCCTCCAGCATAGATATGTCATACATATATGTACCAGGTA
GCATGATACTGCTGTAGACTACTGCTTAAGGTGAGAGGCCTCCAGCTATG
CAGCCTTGGTGTCTCTCTCCCCTCTCGTCTTTTCCCAACTTTTCCGAAGC
GAGTAGGTATGTAGCGAAAAGGATAGCTCTGCGAGCGCTTTGTTCTTTGT
CCTGTGCGAGCGTAGTGCCATGGAGGGCAGCGTTTTTTTGTTTGGCCACG
TTTGTCCTTGAAGTTGCACTCAAGTGACGTGTTGCCGATAGCAACAAGGC
TGTATTCGGCCTTCCGACTTATCTCTTCCGTGGGCGAGGCTTGGGCGTCA
CGTACGGTGTCTGGGTGAAGAAGAAGCGACCCGCACGTTTGTGTTTCGCC
GCTGAACTTGTTTCGGCGCTTGTCGTTCGTTCGCTCGTGCGTTCGTTGTT
TCCTCTTTTTCATGTTGCGGTAGGGCTTCCTGCTGACTTGCGTGTCCTAC
CCGCTAAGCGACGTTCACTTCGCCGTCGTGGACGAGGAAGATTTACCATG
ACACATCAAATGAAGCACACCAGATCGCACACTTGGGCTCGGCGAGAATC
CAATACCCTTGAGCGAGAAGCCGCGCTGGATTGGCCTCGCGGGGAAAGGG
TTTTTGAGCTGCTGCTCGCGGGGTTGAAGGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8066:6021..6753+

>mRNA_M-pyrifera_M_contig8066.18878.1 ID=mRNA_M-pyrifera_M_contig8066.18878.1|Name=mRNA_M-pyrifera_M_contig8066.18878.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig8066:6021..6753+ (Macrocystis pyrifera P11B4 male)
CGGGACGGTGGACCAAAGCGAGGGGGTTTTAGAAGAAGAGCAAACGGAAG
CGCGGGACGGTGGACCAAAGCGAGGGGGTTTTAGAAGAAGAGCAAACGGA
AGCGGGCTTCCTGCTGACTTGCGTGTCCTACCCGCTAAGCGACGTTCACT
TCGCCGTCGTGGACGAGGAAGATTTACCATGACACATCAAATGAAGCACA
CCAGATCGCACACTTGGGCTCGGCGAGAATCCAATACCCTTGAGCGAGAA
GCCGCGCTGGATTGGCCTCGCGGGGAAAGGGTTTTTGAGCTGCTGCTCGC
GGGGTTGAAGGGTGGCTTCCTGCTGACTTGCGTGTCCTACCCGCTAAGCG
ACGTTCACTTCGCCGTCGTGGACGAGGAAGATTTACCATGACACATCAAA
TGAAGCACACCAGATCGCACACTTGGGCTCGGCGAGAATCCAATACCCTT
GAGCGAGAAGCCGCGCTGGATTGGCCTCGCGGGGAAAGGGTTTTTGAGCT
GCTGCTCGCGGGGTTGAAGGGT
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