mRNA_M-pyrifera_M_contig8065.18877.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8065.18877.1
Unique NamemRNA_M-pyrifera_M_contig8065.18877.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8065.18877.1 vs. uniprot
Match: A0A6H5K7I3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I3_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.300e-6
Identity = 27/87 (31.03%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:   49 TGPEVFMLLLRLLSNHFDCTDTGVSYTKLNNFGVPNGTPFCDSSRAFRGVVSAATGTGRGLAPGMEVVLEVVRTAVNKQYPSLTPTL 309
            +GP  +  LL+LL++ ++         KL +FGVPNGTP+      F+ +  +   + R  AP + +V   +R A+ +QYP++  +L
Sbjct:  138 SGPSAYRRLLQLLTDEWEPKRFNRGIDKLQDFGVPNGTPYSKFVTKFKALAMSEIASHRAFAPDLRMVQRALRDALLEQYPNVLSSL 224
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BLAST of mRNA_M-pyrifera_M_contig8065.18877.1 vs. uniprot
Match: A0A6H5JDL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL4_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.390e-6
Identity = 31/104 (29.81%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:    1 YGRYQQEVSRALAA-GSTGPEVFMLLLRLLSNHFDCTDTGVSYTKLNNFGVPNGTPFCDSSRAFRGVVSAATGTGRGLAPGMEVVLEVVRTAVNKQYPSLTPTL 309
            YG   ++V R L     TGP  +  LL+LL++ ++         KL +FGVPNGTP+      F+ +  +   + R  A  + +V   +R A+ +QY ++  +L
Sbjct:   58 YGPSSRQVKRFLETKDKTGPSAYRRLLKLLADEWEPKGFNRGIDKLQDFGVPNGTPYSKFVTKFKALAMSELASHRAFAQDLRMVQRALRDALLEQYLNVLSSL 161
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8065.18877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7I3_9PHAE2.300e-631.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JDL4_9PHAE5.390e-629.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8065contigM-pyrifera_M_contig8065:10531..10856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.5741916-CDS-M-pyrifera_M_contig8065:10530..108541622816711.5741916-CDS-M-pyrifera_M_contig8065:10530..10854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8065 10531..10854 +
1692278134.606106-CDS-M-pyrifera_M_contig8065:10530..108541692278134.606106-CDS-M-pyrifera_M_contig8065:10530..10854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8065 10531..10854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8065.18877.1prot_M-pyrifera_M_contig8065.18877.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8065 10531..10854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8065.18877.1

>prot_M-pyrifera_M_contig8065.18877.1 ID=prot_M-pyrifera_M_contig8065.18877.1|Name=mRNA_M-pyrifera_M_contig8065.18877.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
YGRYQQEVSRALAAGSTGPEVFMLLLRLLSNHFDCTDTGVSYTKLNNFGV
PNGTPFCDSSRAFRGVVSAATGTGRGLAPGMEVVLEVVRTAVNKQYPSLT
PTLYPGSL
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mRNA from alignment at M-pyrifera_M_contig8065:10531..10856+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8065.18877.1 ID=mRNA_M-pyrifera_M_contig8065.18877.1|Name=mRNA_M-pyrifera_M_contig8065.18877.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=326bp|location=Sequence derived from alignment at M-pyrifera_M_contig8065:10531..10856+ (Macrocystis pyrifera P11B4 male)
TACGGGCGCTACCAGCAAGAGGTGTCGCGCGCCCTCGCAGCCGGGTCGAC
GGGACCGGAGGTGTTCATGCTTCTACTGAGGTTGCTGAGCAACCACTTCG
ACTGCACCGACACAGGGGTCAGCTACACCAAGTTGAATAATTTTGGAGTG
CCTAACGGGACCCCCTTTTGCGATTCTAGCCGTGCATTTCGAGGGGTGGT
GTCGGCAGCGACGGGGACTGGGCGTGGTTTGGCACCGGGAATGGAGGTTG
TTTTGGAGGTGGTTCGGACGGCAGTGAACAAGCAGTACCCGAGTTTGACG
CCCACGCTGTACCCGGGAAGTTTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8065:10531..10856+

>mRNA_M-pyrifera_M_contig8065.18877.1 ID=mRNA_M-pyrifera_M_contig8065.18877.1|Name=mRNA_M-pyrifera_M_contig8065.18877.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig8065:10531..10856+ (Macrocystis pyrifera P11B4 male)
TACGGGCGCTACCAGCAAGAGGTGTCGCGCGCCCTCGCAGCCGGGTCGAC
GGGACCGGAGGTGTTCATGCTTCTACTGAGGTTGCTGAGCAACCACTTCG
ACTGCACCGACACAGGGGTCAGCTACACCAAGTTGAATAATTTTGGAGTG
CCTAACGGGACCCCCTTTTGCGATTCTAGCCGTGCATTTCGAGGGGTGGT
GTCGGCAGCGACGGGGACTGGGCGTGGTTTGGCACCGGGAATGGAGGTTG
TTTTGGAGGTGGTTCGGACGGCAGTGAACAAGCAGTACCCGAGTTTGACG
CCCACGCTGTACCCGGGAAGTTTGTACGGGCGCTACCAGCAAGAGGTGTC
GCGCGCCCTCGCAGCCGGGTCGACGGGACCGGAGGTGTTCATGCTTCTAC
TGAGGTTGCTGAGCAACCACTTCGACTGCACCGACACAGGGGTCAGCTAC
ACCAAGTTGAATAATTTTGGAGTGCCTAACGGGACCCCCTTTTGCGATTC
TAGCCGTGCATTTCGAGGGGTGGTGTCGGCAGCGACGGGGACTGGGCGTG
GTTTGGCACCGGGAATGGAGGTTGTTTTGGAGGTGGTTCGGACGGCAGTG
AACAAGCAGTACCCGAGTTTGACGCCCACGCTGTACCCGGGAAGTTTG
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