mRNA_M-pyrifera_M_contig80632.18875.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80632.18875.1
Unique NamemRNA_M-pyrifera_M_contig80632.18875.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80632.18875.1 vs. uniprot
Match: A0A5A8DX15_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DX15_CAFRO)

HSP 1 Score: 169 bits (427), Expect = 7.260e-44
Identity = 105/289 (36.33%), Postives = 155/289 (53.63%), Query Frame = 1
Query:    1 FSADLWNEMVPRTTNLSYLHSAGKALHLAVAGVVPKATIVVQSWMLHNSWWTSNRTKAFFTGFPNDSLLILDMNTDESPSWSQFDSYYGRPWIWCSLEEGGGRSGIYGNLSVIATTT--VTDRRNTS-MVGMGYTPESIGHNPIVVDLLAEMAWRTTPLSLSPSTPTSSSPSIFPPCTNSLDGWIEAFAERRYGWGGEKVKEAWRWLHVGGYHEIDSGV-WSVLEFTPSLSAGVSRAINATAFVNALRCLVEAVEVGEVEEELETVRFDLVDVARQVVSDVLVDTLALL 855
            ++AD +NEM PR  + SYL +A +A+  A++ V   AT V+Q+W+ H  +WT+   KA+ +G P   +LILD+N +E P WS+FDS+YG  +IW +L   GGRSG+YGNL+ +AT    V +   T+ +VG G+TPE+I  NP+  +L+  M+W    +                      D ++  +++RRYG        AW  +    Y    S   W  +E  P  +      +NATA   ALR LV+A   GE++      R DLVD+A QV+  V  D  ALL
Sbjct:  312 YNADQFNEMEPRNKDPSYLAAANRAVWQAMSTVDANATYVMQAWLFHEQFWTAAAVKAYLSGVPTGRMLILDLNAEEQPLWSKFDSFYGHNFIWNALHNYGGRSGMYGNLTRVATGPPGVKEAMPTATIVGTGFTPEAILQNPVYYELVTRMSWEHKAVD--------------------ADRFVTRWSQRRYGANSPSAVAAWLLMRRTIYDTAWSWTRWGEVEARPQATVPDRSDLNATASAEALRLLVQAGSNGELDPTSGPYRHDLVDLASQVMQFVFTDEAALL 580          
BLAST of mRNA_M-pyrifera_M_contig80632.18875.1 vs. uniprot
Match: A0A5A8C2Y6_CAFRO (DNA polymerase delta subunit 3 n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C2Y6_CAFRO)

HSP 1 Score: 169 bits (427), Expect = 1.190e-43
Identity = 105/289 (36.33%), Postives = 155/289 (53.63%), Query Frame = 1
Query:    1 FSADLWNEMVPRTTNLSYLHSAGKALHLAVAGVVPKATIVVQSWMLHNSWWTSNRTKAFFTGFPNDSLLILDMNTDESPSWSQFDSYYGRPWIWCSLEEGGGRSGIYGNLSVIATTT--VTDRRNTS-MVGMGYTPESIGHNPIVVDLLAEMAWRTTPLSLSPSTPTSSSPSIFPPCTNSLDGWIEAFAERRYGWGGEKVKEAWRWLHVGGYHEIDSGV-WSVLEFTPSLSAGVSRAINATAFVNALRCLVEAVEVGEVEEELETVRFDLVDVARQVVSDVLVDTLALL 855
            ++AD +NEM PR  + SYL +A +A+  A++ V   AT V+Q+W+ H  +WT+   KA+ +G P   +LILD+N +E P WS+FDS+YG  +IW +L   GGRSG+YGNL+ +AT    V +   T+ +VG G+TPE+I  NP+  +L+  M+W    +                      D ++  +++RRYG        AW  +    Y    S   W  +E  P  +      +NATA   ALR LV+A   GE++      R DLVD+A QV+  V  D  ALL
Sbjct:  695 YNADQFNEMEPRNKDPSYLAAANRAVWQAMSTVDANATYVMQAWLFHEQFWTAAAVKAYLSGVPTGRMLILDLNAEEQPLWSKFDSFYGHNFIWNALHNYGGRSGMYGNLTRVATGPPGVKEAMPTATIVGTGFTPEAILQNPVYYELVTRMSWEHKAVD--------------------ADRFVTRWSQRRYGANSPSAVAAWLLMRRTIYDTAWSWTRWGEVEARPQATVPDRSDLNATASAEALRLLVQAGSNGELDPTSGPYRHDLVDLASQVMQFVFTDEAALL 963          
BLAST of mRNA_M-pyrifera_M_contig80632.18875.1 vs. uniprot
Match: UPI001C077420 (alpha-N-acetylglucosaminidase C-terminal domain-containing protein n=1 Tax=Arenibacter algicola TaxID=616991 RepID=UPI001C077420)

HSP 1 Score: 142 bits (359), Expect = 9.980e-35
Identity = 92/285 (32.28%), Postives = 150/285 (52.63%), Query Frame = 1
Query:    1 FSADLWNEMVPRTTNLSYLHSAGKALHLAVAGVVPKATIVVQSWML--HNSWWTSNRTKAFFTGFPNDSLLILDMNTDESPSWSQFDSYYGRPWIWCSLEEGGGRSGIYGNLSVIATTTVTDRRNTS---MVGMGYTPESIGHNPIVVDLLAEMAWRTTPLSLSPSTPTSSSPSIFPPCTNSLDGWIEAFAERRYGWGGEKVKEAWRWLHVGGY---HEIDSGVWSVLEFTPSLSAG-VSRAINATAFVNALRCLVEAVEVGEVEEELETVRFDLVDVARQVVSD 828
            ++AD + EM+P +  L YL + GKA++  +A   P+A  V Q+W     NS+WT  R KAF    PN+ ++ LD+  +E P W+  +S++G+ W+WC+++  G R  + G L  I +  +  R++ +   +VG+G+  E +G+NPI+ DL+ EMAWR   +                     L  W++ +A  RYG      + AW  L    Y    E  S  +S+L  +P+L    ++   + T    A   L+ A    ++  EL+T RFDLV+VARQV+S+
Sbjct:  310 YAADPFIEMLPPSGELDYLDNLGKAIYNGMAKSDPEAVWVFQTWAFWFQNSFWTQPRIKAFLDAVPNEGMICLDLACEEQPMWNLSESFHGKSWLWCNIQNFGDRVFLGGGLDKINSGIMEVRQDPAKGNLVGLGFVNEGLGYNPIIQDLMFEMAWRDEAVD--------------------LGSWVDRYAGYRYGQPNFDAEMAWSILKETVYAIPKENHSYPYSILTVSPTLEPPKLNFTYSNTRLSKAWESLLNA---SDILGELDTYRFDLVNVARQVLSN 571          
BLAST of mRNA_M-pyrifera_M_contig80632.18875.1 vs. uniprot
Match: X0VCK0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0VCK0_9ZZZZ)

HSP 1 Score: 134 bits (337), Expect = 5.490e-34
Identity = 86/286 (30.07%), Postives = 149/286 (52.10%), Query Frame = 1
Query:    1 FSADLWNEMVPRTTNLSYLHSAGKALHLAVAGVVPKATIVVQSWMLHNS--WWTSNRTKAFFTGFPNDSLLILDMNTDESPSWSQFDSYYGRPWIWCSLEEGGGRSGIYGNLSVIATTTVTDR---RNTSMVGMGYTPESIGHNPIVVDLLAEMAWRTTPLSLSPSTPTSSSPSIFPPCTNSLDGWIEAFAERRYGWGGEKVKEAWRWL----HVGGYHEIDSGVWSVLEFTPSLSAGVSRAINATAFVNALRCLVEAV-EVGEVEEELETVRFDLVDVARQVVSD 828
            ++AD + EM P + +  YL     A++  +    PKA  V+Q W+  N+  +W   + KA F   P++ +++LD+  +++P+W + +++YG+ W+WC+++  GG   + G L+ I     T R    +  ++G+G+  E +G+NP+V DL+ EMAWR  P++                    L+ W   +A  RYG   +  + AW+ L    + G Y+       SV++  P L        + T   +A R L+ A  E+GEV+    T RFD+V+VARQV+S+
Sbjct:   12 YAADTFIEMRPPSDDPKYLGDLAGAVYKGMIQSDPKAIWVLQGWLFVNNPAFWKPPQAKAMFGAIPDERMIVLDLMCEQTPTWRKTEAFYGKSWLWCNIQNFGGTVHLSGALNKIGHDLQTIRWQPESGKLMGLGFVNEGLGYNPVVYDLMFEMAWRDQPVN--------------------LEQWFADYALSRYGRQNKDARRAWQILGKTVYNGPYYTR-----SVVDHIPHLRQVADVPYDNTQLADAWRALIAAADELGEVD----TFRFDMVNVARQVLSN 268          
BLAST of mRNA_M-pyrifera_M_contig80632.18875.1 vs. uniprot
Match: A0A6P8IT62_ACTTE (alpha-N-acetylglucosaminidase-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IT62_ACTTE)

HSP 1 Score: 140 bits (353), Expect = 6.250e-34
Identity = 90/279 (32.26%), Postives = 141/279 (50.54%), Query Frame = 1
Query:    1 FSADLWNEMVPRTTNLSYLHSAGKALHLAVAGVVPKATIVVQSWMLH--NSWWTSNRTKAFFTGFPNDSLLILDMNTDESPSWSQFDSYYGRPWIWCSLEEGGGRSGIYGNLSVIATTTVTDRRNT--SMVGMGYTPESIGHNPIVVDLLAEMAWRTTPLSLSPSTPTSSSPSIFPPCTNSLDGWIEAFAERRYGWGGEKVKEAWRWLHVGGYHEID---SGVWSVLEFTPSLSAGVSRAINATAFVNALRCLVEAVEVGEVEEELETVRFDLVDVARQ 816
            ++AD +NEM P++++ SYL +A K ++  +    P+A  ++Q W+    + +W + + K    G P   ++ILD+  + +P W    + YG+P+IWC L   GG  G+YG +  +AT  V    N+  +M+G G TPE I  N ++ DL+ EM WR+        TPT             L  W+ ++AERRYG   E++ EAW+ L    Y+  D       SV+   PS +       N      AL  L+    V +    +ET R+DLVDV R+
Sbjct:  304 YNADTFNEMTPKSSDPSYLSAASKGVYEGMTAGDPQAIWLMQGWLFQFDSKFWKAPQIKGLLDGIPIGKMIILDLFAEINPIWQNISALYGQPFIWCMLHNFGGNQGLYGAIESVATNPVKASHNSHNTMLGTGLTPEGIFQNDMMYDLMNEMGWRSVGF-----TPTE------------LQDWVISYAERRYGGINEQIAEAWKLLIRSVYNCSDVCEHHCNSVIVMKPSFNIAPHIWFNPEDVYAALYNLLS---VADEFSNVETFRYDLVDVTRE 562          
BLAST of mRNA_M-pyrifera_M_contig80632.18875.1 vs. uniprot
Match: A0A7S1W9L2_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1W9L2_NEODS)

HSP 1 Score: 139 bits (350), Expect = 1.910e-33
Identity = 69/193 (35.75%), Postives = 113/193 (58.55%), Query Frame = 1
Query:    1 FSADLWNEMVPRTTNLSYLHSAGKALHLAVAGVVPKATIVVQSWMLHNSWWTSNRTKAFFTGFPNDSLLILDMNTDESPSWSQFDSYYGRPWIWCSLEEGGGRSGIYGNLSVIATTTVTDRR--NTSMVGMGYTPESIGHNPIVVDLLAEMAWRTTPLSLSPSTPTSSSPSIFPPCTNSLDGWIEAFAERRYG 573
            +S D +NE+ P +T  SYL +A K++  ++  V P+   V+Q W+ H  +WT +R +A+ +G PNDS+LILD+N++      +FD Y+G+ W+W  L   GG  G+YGNLS IAT  + D    N++MVG+G+TPE+I  NP++ ++L    + +TP+ + P                    W++ +  +RYG
Sbjct:  340 YSCDTFNEVDPTSTQPSYLAAASKSVVDSIQDVDPQGVWVMQGWLFHFQYWTYDRVRAYLSGVPNDSMLILDLNSEAGALAPKFDQYFGKHWVWNMLHNYGGVRGVYGNLSRIATGPLEDLHALNSTMVGIGFTPEAIEQNPVMYEMLTSTFYASTPIPVVP--------------------WLKDYVAQRYG 512          
BLAST of mRNA_M-pyrifera_M_contig80632.18875.1 vs. uniprot
Match: UPI0006237226 (LOW QUALITY PROTEIN: alpha-N-acetylglucosaminidase n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI0006237226)

HSP 1 Score: 139 bits (349), Expect = 2.330e-33
Identity = 75/216 (34.72%), Postives = 118/216 (54.63%), Query Frame = 1
Query:    1 FSADLWNEMVPRTTNLSYLHSAGKALHLAVAGVVPKATIVVQSWM-LHNS-WWTSNRTKAFFTGFPNDSLLILDMNTDESPSWSQFDSYYGRPWIWCSLEEGGGRSGIYGNLSVIATTTVTDRR--NTSMVGMGYTPESIGHNPIVVDLLAEMAWRTTPLSLSPSTPTSSSPSIFPPCTNSLDGWIEAFAERRYGWGGEKVKEAWRWLHVGGYHEI 636
            ++ D +NE  P  +NL+YL + G+++  A+     KA  +VQ+W+ +H+S +WT  R ++F T  P   +L+LD+ +++ P +S+F SYYG+P+IWC L   GG  G++G+  +I   T   R    ++MVG G TPE I  N ++ +L+ EMA+R  P+                     LD W E +A RRYG   E     WR+L    Y+ I
Sbjct:  324 YNCDTFNENEPSKSNLTYLRNVGRSIFSAMNATDTKAIWLVQAWLFVHDSTFWTEPRVRSFLTSVPTGRMLVLDLQSEQFPQYSRFQSYYGQPFIWCMLHNFGGTLGMFGSAQIINQRTFEGRNMNGSTMVGTGLTPEGINQNYVIYELMNEMAYRHEPVD--------------------LDAWFENYATRRYGAWNEYTTATWRYLGRTVYNFI 519          
BLAST of mRNA_M-pyrifera_M_contig80632.18875.1 vs. uniprot
Match: A0A673FN27_9TELE (Alpha-N-acetylglucosaminidase-like n=3 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673FN27_9TELE)

HSP 1 Score: 137 bits (345), Expect = 4.270e-33
Identity = 89/280 (31.79%), Postives = 142/280 (50.71%), Query Frame = 1
Query:    1 FSADLWNEMVPRTTNLSYLHSAGKALHLAVAGVVPKATIVVQSWML--HNSWWTSNRTKAFFTGFPNDSLLILDMNTDESPSWSQFDSYYGRPWIWCSLEEGGGRSGIYGNLSVIATTTVTDRR--NTSMVGMGYTPESIGHNPIVVDLLAEMAWRTTPLSLSPSTPTSSSPSIFPPCTNSLDGWIEAFAERRYGWGGEKVKEAWRWLHVGGYH----EIDSGVWSVLEFTPSLSAGVSRAINATAFVNALRCLVEAVEVGEVEEELETVRFDLVDVARQ 816
            ++ D +NEMVP +++ +YL S  +A+   +  V P+A  ++Q W+   + S+W  ++ KA   G P   +++LD+  +  P +S  +S+Y +P+IWC L   GG SG++G +  I +      R  N+++VG+G TPE I  NP++ +L++E+AWR  P++LS                     W+  +A R YG   E +  AW+ L    Y+    +  +   S L   PSL          T F  A + L EA         LET R+DLVDV RQ
Sbjct:  291 YNTDTFNEMVPASSDPAYLASISRAVFNTMTSVDPQAIWLMQGWLFISNPSFWKPDQVKALLHGVPLGRMIVLDLFAESMPVYSSTNSFYSQPFIWCMLHNFGGNSGLFGTVESINSGPFNAIRFPNSTLVGLGLTPEGIEQNPVIYELMSELAWRKEPVNLSK--------------------WVSLYALRHYGSMDENLTAAWQLLFHSVYNCTLPQYKNHNRSPLVHRPSLRMQTDIWYEPTDFYKAWKLLFEAAPGLAT---LETFRYDLVDVTRQ 547          
BLAST of mRNA_M-pyrifera_M_contig80632.18875.1 vs. uniprot
Match: A0A1W4WK47_AGRPL (alpha-N-acetylglucosaminidase isoform X1 n=2 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4WK47_AGRPL)

HSP 1 Score: 138 bits (347), Expect = 4.430e-33
Identity = 84/278 (30.22%), Postives = 142/278 (51.08%), Query Frame = 1
Query:    1 FSADLWNEMVPRTTNLSYLHSAGKALHLAVAGVVPKATIVVQSWM-LHNSWWTSNRTKAFFTGFPNDSLLILDMNTDESPSWSQFDSYYGRPWIWCSLEEGGGRSGIYGNLSVIATTTVTDRRNTSMVGMGYTPESIGHNPIVVDLLAEMAWRTTPLSLSPSTPTSSSPSIFPPCTNSLDGWIEAFAERRYGWGGEKVKEAWRWLHVGGYH----EIDSGVWSVLEFTPSLSAGVSRAINATAFVNALRCLVEAVEVGEVEEELETVRFDLVDVARQV 819
            +SAD++NEM P +T+ SY+ S G  ++  +    P A  ++Q W+ +++ +WT  R KA  T  P   ++ILD+ +++ P + +FDSY+G+P+IWC L   GG  G+YG+  +I    +  R  T+M+G+G T E I  N ++ DL++EM+WR  P+ L+                     W + ++ RRYG       + W+ L    Y+    E   G +S+    PSL          +   +A    ++A    +   + ET + D+VD+ RQV
Sbjct:  322 YSADVFNEMSPVSTDESYISSVGSGVYKTMVKNDPGAIWLMQGWLFVYDPFWTKERAKALVTSVPFGKMIILDLQSEQFPQYDRFDSYFGQPFIWCMLHNFGGTLGMYGSAHIINKEPIRARNETTMIGVGITAEGINQNYVIYDLMSEMSWRDEPVDLTE--------------------WFDNYSRRRYGQINMSANQTWQILKSTLYNFTGTERLRGKYSI-NSRPSLHLKDWMWYENSDLFHAFETFLDA---SDSLADSETYKHDIVDLTRQV 575          
BLAST of mRNA_M-pyrifera_M_contig80632.18875.1 vs. uniprot
Match: A0A356EL68_9PLAN (Alpha-N-acetylglucosaminidase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356EL68_9PLAN)

HSP 1 Score: 138 bits (347), Expect = 4.960e-33
Identity = 89/282 (31.56%), Postives = 144/282 (51.06%), Query Frame = 1
Query:    1 FSADLWNEMVPRTTNLSYLHSAGKALHLAVAGVVPKATIVVQSW--MLHNSWWTSNRTKAFFTGFPNDSLLILDMNTDESPSWSQFDSYYGRPWIWCSLEEGGGRSGIYGNLSVIATTTVTDRRNTS---MVGMGYTPESIGHNPIVVDLLAEMAWRTTPLSLSPSTPTSSSPSIFPPCTNSLDGWIEAFAERRYGWGGEKVKEAWRWLHVGGYHEIDSGVWSVLEFTPSLSAGVSRAINATAFVNALRCLVE-AVEVGEVEEELETVRFDLVDVARQVVSD 828
            ++AD + EM P + +L YL    +A++  +    P+A  V+Q W  M H+ +WT +R +AF     +D +++LD+  +  P W++ +++ G+PW+WC+++  G    + G L++IA      RR+ +   +VG+G+  E +G+NP+V DL+ EMAW   P                      LD WIE +   RYG  G     AW+ L    Y E       V    PSL  G S + N    + A R ++E A E+G  +    T R+DLV +ARQ +S+
Sbjct:  341 YAADTFIEMKPPSGDLEYLARLSRAIYRGMVDHDPEAVWVLQGWAFMFHSKFWTQDRIRAFLDAADDDRMVVLDLFCESRPIWNKTEAFCGKPWLWCNIQNFGNTVFLGGPLNMIAADLPAARRDPAGGRLVGLGFVNEGLGYNPVVHDLMFEMAWSEEPAD--------------------LDAWIEQYVVHRYGRAGGGSLRAWKQLLPTVYAERGR-YRPVTNRLPSL--GESPSFNTVPVIGAWRAMLEDADELGNTD----TYRYDLVHIARQALSN 595          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80632.18875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DX15_CAFRO7.260e-4436.33Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5A8C2Y6_CAFRO1.190e-4336.33DNA polymerase delta subunit 3 n=2 Tax=Cafeteria r... [more]
UPI001C0774209.980e-3532.28alpha-N-acetylglucosaminidase C-terminal domain-co... [more]
X0VCK0_9ZZZZ5.490e-3430.07Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A6P8IT62_ACTTE6.250e-3432.26alpha-N-acetylglucosaminidase-like n=1 Tax=Actinia... [more]
A0A7S1W9L2_NEODS1.910e-3335.75Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
UPI00062372262.330e-3334.72LOW QUALITY PROTEIN: alpha-N-acetylglucosaminidase... [more]
A0A673FN27_9TELE4.270e-3331.79Alpha-N-acetylglucosaminidase-like n=3 Tax=Sinocyc... [more]
A0A1W4WK47_AGRPL4.430e-3330.22alpha-N-acetylglucosaminidase isoform X1 n=2 Tax=A... [more]
A0A356EL68_9PLAN4.960e-3331.56Alpha-N-acetylglucosaminidase n=1 Tax=Planctomycet... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80632contigM-pyrifera_M_contig80632:11..865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score164.1
Seed ortholog evalue9.4e-38
Seed eggNOG ortholog946362.XP_004994842.1
Preferred namenaglu
KEGG koko:K01205
KEGG ReactionR07816
KEGG Pathwayko00531,ko01100,ko04142,map00531,map01100,map04142
KEGG ModuleM00078
Hectar predicted targeting categoryother localisation
EggNOG free text desc.alpha-N-acetylglucosaminidase activity
EggNOG OGs38C0N@33154,KOG2233@1,KOG2233@2759
EC3.2.1.50
COG Functional cat.U
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size855
Cds size831
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.4693484-CDS-M-pyrifera_M_contig80632:10..8411622816711.4693484-CDS-M-pyrifera_M_contig80632:10..841Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80632 11..841 -
1692278134.5254445-CDS-M-pyrifera_M_contig80632:10..8411692278134.5254445-CDS-M-pyrifera_M_contig80632:10..841Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80632 11..841 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.4838202-UTR-M-pyrifera_M_contig80632:841..8651622816711.4838202-UTR-M-pyrifera_M_contig80632:841..865Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80632 842..865 -
1692278134.5403104-UTR-M-pyrifera_M_contig80632:841..8651692278134.5403104-UTR-M-pyrifera_M_contig80632:841..865Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80632 842..865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80632.18875.1prot_M-pyrifera_M_contig80632.18875.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80632 11..841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80632.18875.1

>prot_M-pyrifera_M_contig80632.18875.1 ID=prot_M-pyrifera_M_contig80632.18875.1|Name=mRNA_M-pyrifera_M_contig80632.18875.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=277bp
MVPRTTNLSYLHSAGKALHLAVAGVVPKATIVVQSWMLHNSWWTSNRTKA
FFTGFPNDSLLILDMNTDESPSWSQFDSYYGRPWIWCSLEEGGGRSGIYG
NLSVIATTTVTDRRNTSMVGMGYTPESIGHNPIVVDLLAEMAWRTTPLSL
SPSTPTSSSPSIFPPCTNSLDGWIEAFAERRYGWGGEKVKEAWRWLHVGG
YHEIDSGVWSVLEFTPSLSAGVSRAINATAFVNALRCLVEAVEVGEVEEE
LETVRFDLVDVARQVVSDVLVDTLALL
back to top

mRNA from alignment at M-pyrifera_M_contig80632:11..865-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80632.18875.1 ID=mRNA_M-pyrifera_M_contig80632.18875.1|Name=mRNA_M-pyrifera_M_contig80632.18875.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=855bp|location=Sequence derived from alignment at M-pyrifera_M_contig80632:11..865- (Macrocystis pyrifera P11B4 male)
TTCTCAGCTGATTTGTGGAATGAAATGGTGCCCCGCACCACAAACCTCTC CTACCTCCACTCTGCTGGAAAAGCGTTGCATCTTGCGGTAGCAGGCGTTG TGCCGAAGGCGACGATTGTCGTGCAGAGTTGGATGCTGCACAACTCTTGG TGGACATCCAACCGCACAAAAGCCTTCTTCACTGGATTCCCGAATGATTC GCTCCTAATTCTCGACATGAACACTGATGAATCACCTTCATGGAGTCAAT TTGATTCTTACTATGGCAGGCCATGGATCTGGTGTAGTTTGGAGGAAGGT GGTGGGAGGTCTGGGATTTATGGGAATCTGTCTGTGATTGCAACAACGAC GGTAACCGACCGCAGAAATACTTCAATGGTTGGTATGGGTTACACACCAG AGTCCATAGGTCACAATCCGATTGTTGTGGATCTTTTGGCGGAAATGGCG TGGAGAACCACTCCACTCTCCCTCTCCCCTTCCACTCCCACTTCCTCATC CCCTTCAATCTTTCCTCCATGCACGAATTCACTGGACGGTTGGATTGAAG CATTCGCGGAGCGAAGGTATGGTTGGGGTGGGGAGAAGGTGAAAGAGGCC TGGAGGTGGTTGCATGTTGGTGGGTATCACGAGATTGACTCGGGGGTGTG GAGTGTTTTGGAGTTTACTCCATCACTCTCAGCTGGAGTGAGTCGAGCGA TTAATGCAACTGCATTTGTGAATGCTTTGCGATGTCTTGTGGAGGCAGTG GAGGTTGGAGAAGTGGAAGAAGAGTTGGAGACGGTACGGTTTGATCTAGT TGATGTAGCAAGGCAGGTGGTCAGTGATGTTTTAGTTGATACGTTGGCAT TGCTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig80632:11..865-

>mRNA_M-pyrifera_M_contig80632.18875.1 ID=mRNA_M-pyrifera_M_contig80632.18875.1|Name=mRNA_M-pyrifera_M_contig80632.18875.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1662bp|location=Sequence derived from alignment at M-pyrifera_M_contig80632:11..865- (Macrocystis pyrifera P11B4 male)
ATGGTGCCCCGCACCACAAACCTCTCCTACCTCCACTCTGCTGGAAAAGC
GTTGCATCTTGCGGTAGCAGGCGTTGTGCCGAAGGCGACGATTGTCGTGC
AGAGTTGGATGCTGCACAACTCTTGGTGGACATCCAACCGCACAAAAGCC
TTCTTCACTGGATTCCCGAATGATTCGCTCCTAATTCTCGACATGAACAC
TGATGAATCACCTTCATGGAGTCAATTTGATTCTTACTATGGCAGGCCAT
GGATCTGGTGTAGTTTGGAGGAAGGTGGTGGGAGGTCTGGGATTTATGGG
AATCTGTCTGTGATTGCAACAACGACGGTAACCGACCGCAGAAATACTTC
AATGGTTGGTATGGGTTACACACCAGAGTCCATAGGTCACAATCCGATTG
TTGTGGATCTTTTGGCGGAAATGGCGTGGAGAACCACTCCACTCTCCCTC
TCCCCTTCCACTCCCACTTCCTCATCCCCTTCAATCTTTCCTCCATGCAC
GAATTCACTGGACGGTTGGATTGAAGCATTCGCGGAGCGAAGGTATGGTT
GGGGTGGGGAGAAGGTGAAAGAGGCCTGGAGGTGGTTGCATGTTGGTGGG
TATCACGAGATTGACTCGGGGGTGTGGAGTGTTTTGGAGTTTACTCCATC
ACTCTCAGCTGGAGTGAGTCGAGCGATTAATGCAACTGCATTTGTGAATG
CTTTGCGATGTCTTGTGGAGGCAGTGGAGGTTGGAGAAGTGGAAGAAGAG
TTGGAGACGGTACGGTTTGATCTAGTTGATGTAGCAAGGCAGGTGGTCAG
TGATGTTTTAGTTGATACGTTGGCATTGCTGATGGTGCCCCGCACCACAA
ACCTCTCCTACCTCCACTCTGCTGGAAAAGCGTTGCATCTTGCGGTAGCA
GGCGTTGTGCCGAAGGCGACGATTGTCGTGCAGAGTTGGATGCTGCACAA
CTCTTGGTGGACATCCAACCGCACAAAAGCCTTCTTCACTGGATTCCCGA
ATGATTCGCTCCTAATTCTCGACATGAACACTGATGAATCACCTTCATGG
AGTCAATTTGATTCTTACTATGGCAGGCCATGGATCTGGTGTAGTTTGGA
GGAAGGTGGTGGGAGGTCTGGGATTTATGGGAATCTGTCTGTGATTGCAA
CAACGACGGTAACCGACCGCAGAAATACTTCAATGGTTGGTATGGGTTAC
ACACCAGAGTCCATAGGTCACAATCCGATTGTTGTGGATCTTTTGGCGGA
AATGGCGTGGAGAACCACTCCACTCTCCCTCTCCCCTTCCACTCCCACTT
CCTCATCCCCTTCAATCTTTCCTCCATGCACGAATTCACTGGACGGTTGG
ATTGAAGCATTCGCGGAGCGAAGGTATGGTTGGGGTGGGGAGAAGGTGAA
AGAGGCCTGGAGGTGGTTGCATGTTGGTGGGTATCACGAGATTGACTCGG
GGGTGTGGAGTGTTTTGGAGTTTACTCCATCACTCTCAGCTGGAGTGAGT
CGAGCGATTAATGCAACTGCATTTGTGAATGCTTTGCGATGTCTTGTGGA
GGCAGTGGAGGTTGGAGAAGTGGAAGAAGAGTTGGAGACGGTACGGTTTG
ATCTAGTTGATGTAGCAAGGCAGGTGGTCAGTGATGTTTTAGTTGATACG
TTGGCATTGCTG
back to top