mRNA_M-pyrifera_M_contig80618.18872.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80618.18872.1
Unique NamemRNA_M-pyrifera_M_contig80618.18872.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80618.18872.1 vs. uniprot
Match: A0A8J4Q232_9MYCE (Fido domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q232_9MYCE)

HSP 1 Score: 100 bits (249), Expect = 9.680e-23
Identity = 62/163 (38.04%), Postives = 89/163 (54.60%), Query Frame = 1
Query:    1 LDEHLVKGINAMVFDGM-GVSSEWRTVNVKPAGSHFAYCMHEKVSGRINTLLSFVKTKMENHSE-------LEDRLLIGCFFFSEFLLIHPFANGNGRTARILLSYLLKSDLVVPFSLA-RARQPYLDVLEQRMDGQV--PCELAAYLAMGARRAAYNAEFLL 456
            L E L+K  +  +  G+   S ++RT N +P  S F Y  H+ +   +  L++FV   M+   +        +D + +G  FFSEFL IHPF+NGNGR ARILLS +LK    V F L  R R+ Y+D +E R D  +  P  LA Y+ + A R+A +   LL
Sbjct:  129 LSEDLIKRAHLAIGSGIIEASGQYRTKNARPNNSPFRYLSHQSIERILQQLIAFVNENMKTILQKSDPVMRTKDAIFLGTLFFSEFLYIHPFSNGNGRVARILLSKILKPVSKVHFPLILRKREDYIDAIESRNDRYITPPNTLATYVLLCASRSASDLRTLL 291          
BLAST of mRNA_M-pyrifera_M_contig80618.18872.1 vs. uniprot
Match: A0A0D2U511_CAPO3 (Fido domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U511_CAPO3)

HSP 1 Score: 94.4 bits (233), Expect = 2.850e-20
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 1
Query:    4 DEHLVKGINAMVF-DGMGVSSEWRTVNVKPAGSHFAYCMHEKVSGRINTLLSFVKTKME---NHSELEDRLL-IGCFFFSEFLLIHPFANGNGRTARILLSYLLKSDLVVPFSL-ARARQPYLDVLEQRMDGQVPCELAAYLAMGARRAAYNAEFLLM 459
            D  L + ++ +V  D M  + E+RT+ V+P  S+ AY    K+S R++ L +  +  M      +EL D+ + +   FF EFLLIHPF NGNGR AR+LLSYLL++   VP SL    R  Y++VLE     +VP     Y+       A    +L M
Sbjct:  156 DASLARDVHRIVMHDCMDYAGEYRTIQVQPLNSNVAYATPSKISQRLDALFAITQELMPATVTTTELFDQAIKVAGVFFREFLLIHPFRNGNGRVARLLLSYLLRATTAVPVSLFINNRAEYIEVLENCPAEKVPWACIGYILRCCLHQASQMHYLAM 313          
BLAST of mRNA_M-pyrifera_M_contig80618.18872.1 vs. uniprot
Match: A9VBR1_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VBR1_MONBE)

HSP 1 Score: 89.4 bits (220), Expect = 2.090e-19
Identity = 55/134 (41.04%), Postives = 69/134 (51.49%), Query Frame = 1
Query:   70 RTVNVKPAGSHFAYCMHEKVSGRINTLLSFVKTKMENHSELEDR----LLIGCFFFSEFLLIHPFANGNGRTARILLSYLLKSDLVVPFSL-ARARQPYLDVLEQRMDGQVPCELAAYLAMGARRAAYNAEFLL 456
            R V V+P+GS   Y +   VS R+  L   V+  +       +R    + IG FFF  FLLIHPF NGNGR AR+LLS LL+    VP SL    R  Y+ +LE+      P    AY+   A R A N  FLL
Sbjct:   50 RNVEVRPSGSPMVYALSRTVSARLECLFRVVREALALDVPDAERGPRAVRIGAFFFRSFLLIHPFCNGNGRVARLLLSILLRPHCTVPISLFLNDRDEYIRMLERCPPMTPPWACIAYIVRCAERQASNVAFLL 183          
BLAST of mRNA_M-pyrifera_M_contig80618.18872.1 vs. uniprot
Match: A0A2P6NY88_9EUKA (Fido domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NY88_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 2.340e-17
Identity = 53/148 (35.81%), Postives = 75/148 (50.68%), Query Frame = 1
Query:   28 NAMVFDGMGVSSEWRTVNVKPAGSHFAYCMHEKVSGRINTLLSFVKTKMENHSELE------DRLLIGCFFFSEFLLIHPFANGNGRTARILLSYLLKSDLVVPFSLARARQPYLDVLEQRMDGQVPCELAAYLAMGARRAAYNAEFL 453
            N ++ DG      +R   V+ + S   Y   E +  R+N L  F   K    + L+      +  L+   F SEFLLIHPF+NGNGRTAR+LLS+ L+   VVPFSL      Y+  LE+R  G  P  LA  + + A +     ++L
Sbjct:  153 NGIIEDG----GLYREKQVQASQSKVVYAPPETIEARMNVLFQFANQKAAECANLDPIQRTKEMFLVATVFLSEFLLIHPFSNGNGRTARLLLSFFLRDVTVVPFSLNH----YISALEERNGGTPPSVLATLMLLSADQTHDIMDYL 292          
BLAST of mRNA_M-pyrifera_M_contig80618.18872.1 vs. uniprot
Match: U9UJ18_RHIID (Fido domain-containing protein n=6 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9UJ18_RHIID)

HSP 1 Score: 82.4 bits (202), Expect = 6.060e-16
Identity = 49/135 (36.30%), Postives = 67/135 (49.63%), Query Frame = 1
Query:   58 SSEWRTVNVKPAGSHFAYCMHEKVSGRINTLLSFVKTKMENHSELEDRLLIGCFFFSEFLLIHPFANGNGRTARILLSYLLKSDLVVPFSL---ARARQPYLDVLEQRM----DGQVPCELAAYLAMGARRAAYN 441
            + ++RT  VKPA   F Y   E +   +  L    +   +   ELE+ +  G  F + FL IHPF NGNGR AR+LLSYLL +  VVP SL    + R+ YLD L +          P  LA ++       +YN
Sbjct:  143 AGQYRTKFVKPAQDDFCYMEPELIEKELKKLFRQCREDFKEDLELEEAIKFGACFLAHFLYIHPFMNGNGRVARLLLSYLLSNFTVVPLSLYTGEKTREIYLDCLREAQWYHKPPFKPSALATFILENVHLTSYN 277          
BLAST of mRNA_M-pyrifera_M_contig80618.18872.1 vs. uniprot
Match: A0A482S7V4_9ARCH (Fido domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7V4_9ARCH)

HSP 1 Score: 82.8 bits (203), Expect = 7.620e-16
Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 1
Query:   70 RTVNVKPAGSHFAYCMHEKVSGRINTLLSFVKTKMENHSELEDRLLIG--CFFFSEFLLIHPFANGNGRTARILLSYLLKSDLVVPFSLARA--RQPYLDVLEQRMDGQVPCELAAYLAMGARRAAYNAEFLLMD 462
            RT     AG+   Y  H  + GR+++L+ FV +K+  H       ++     FFSEFL IHPF++GNGRTAR+L +++LK   VVPFSL+ +  R+ YL  L   M+ Q          +   R +    +LL+D
Sbjct:  167 RTSGAAAAGTSVEYLPHALILGRLSSLVKFVNSKLAAHEGFLSPSIVSLAALFFSEFLHIHPFSDGNGRTARLLTNFILKPFCVVPFSLSLSFSRENYLAAL---MEAQQNYNFRGLFLVSIDRCSRMLSYLLLD 298          
BLAST of mRNA_M-pyrifera_M_contig80618.18872.1 vs. uniprot
Match: U9STG7_RHIID (Fido domain-containing protein n=8 Tax=Rhizophagus TaxID=1129544 RepID=U9STG7_RHIID)

HSP 1 Score: 80.9 bits (198), Expect = 3.110e-15
Identity = 53/148 (35.81%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   13 LVKGINAMVFDGM-GVSSEWRTVNVKPAGSHFAYCMHEKVSGRINTLLSFVKTKMENHS-ELEDRLLIGCFFFSEFLLIHPFANGNGRTARILLSYLLKSDLVVPFSL---ARARQPYLDVLEQRMDGQVPCELAAYLAMGARRAAYN 441
            L K +N  + +G+   + ++R   V PA  +F Y     +  R+N L    + K +    +LE+ +  G  F+S FL IHPF NGNGR AR+LLSYLL     VPFSL    + R  YL  L +      P  LAA +      + YN
Sbjct:  150 LAKQLNQHICNGLIDNAGQYRIKYVMPAQENFVYMSPYLIEDRMNELFRQCREKFKKEDLQLEEAVKFGACFYSHFLSIHPFMNGNGRVARLLLSYLLSRFTAVPFSLYIGTKTRDVYLQCLRESRSF-TPNALAALILESIHLSFYN 296          
BLAST of mRNA_M-pyrifera_M_contig80618.18872.1 vs. uniprot
Match: A0A814M9Q3_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814M9Q3_9BILA)

HSP 1 Score: 79.3 bits (194), Expect = 8.250e-15
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   67 WRTVNVKPAGSHFAYCMHEKVSGRINTLLSFVKTKMENHSELEDRLLIGCFFFSEFLLIHPFANGNGRTARILLSYLLKSDLVVPFSLA---RARQPYLDVLEQ 369
            +RT  V P+   + Y     +  ++ +L    +   E +SE+ +R+ IG  FF+ FL IHPF+NGNGR +R+LLS++L +  VVP  L    R+R+ YL+ L +
Sbjct:  146 FRTAPVSPSNEDYEYVKPHLIEEKLESLFKNTRHLFEKYSEIHERIKIGALFFTMFLDIHPFSNGNGRISRLLLSFILSNPCVVPIGLYYSHRSREIYLNCLRE 249          
BLAST of mRNA_M-pyrifera_M_contig80618.18872.1 vs. uniprot
Match: A0A2Z6QQM7_9GLOM (Fic family protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QQM7_9GLOM)

HSP 1 Score: 79.0 bits (193), Expect = 1.380e-14
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   13 LVKGINAMVFDGMGVSS-EWRTVNVKPAGSHFAYCMHEKVSGRINTLLSFVKTKMENHS-ELEDRLLIGCFFFSEFLLIHPFANGNGRTARILLSYLLKSDLVVPFSL 330
            L + +N  + DG+ V +  +R   VKPAG ++ Y     +   +N L    + K    + +LE+ +  G  F++ FL IHPF NGNGR AR+LLSYLL     VPFSL
Sbjct:  146 LAQQLNQYICDGLTVDAGRYRLNYVKPAGENYVYMAPYLIEDHMNELFHQCQEKFRKENLQLEEAVKFGACFYTHFLNIHPFTNGNGRVARLLLSYLLSKFTAVPFSL 253          
BLAST of mRNA_M-pyrifera_M_contig80618.18872.1 vs. uniprot
Match: A0A397SLM6_9GLOM (Fido domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SLM6_9GLOM)

HSP 1 Score: 77.0 bits (188), Expect = 8.530e-14
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   58 SSEWRTVNVKPAGSHFAYCMHEKVSGRINTLLSFVKTKMENHS-ELEDRLLIGCFFFSEFLLIHPFANGNGRTARILLSYLLKSDLVVPFSL---ARARQPYLDVLEQRMDGQV--PCELAAYL 411
            + ++R  +V  A + F Y   E +  R+N L    + K +    +LE+ +  G  F S FL+IHPF NGNGR AR+LLSYLL    V+P SL   +  R  YL  L++  +  +  P  LAA++
Sbjct:  185 AGQYRKKSVMAAQTDFIYMSPELIEDRMNELFCQAREKFKRTDLQLEEAIKFGSCFISYFLIIHPFINGNGRVARLLLSYLLSRFTVLPLSLYTESNTRDIYLQCLQEAQNDHLFKPSALAAFI 308          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80618.18872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4Q232_9MYCE9.680e-2338.04Fido domain-containing protein n=1 Tax=Polysphondy... [more]
A0A0D2U511_CAPO32.850e-2037.34Fido domain-containing protein n=1 Tax=Capsaspora ... [more]
A9VBR1_MONBE2.090e-1941.04Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A2P6NY88_9EUKA2.340e-1735.81Fido domain-containing protein n=1 Tax=Planoprotos... [more]
U9UJ18_RHIID6.060e-1636.30Fido domain-containing protein n=6 Tax=Rhizophagus... [more]
A0A482S7V4_9ARCH7.620e-1636.30Fido domain-containing protein n=1 Tax=archaeon Ta... [more]
U9STG7_RHIID3.110e-1535.81Fido domain-containing protein n=8 Tax=Rhizophagus... [more]
A0A814M9Q3_9BILA8.250e-1537.50Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A2Z6QQM7_9GLOM1.380e-1439.81Fic family protein n=1 Tax=Rhizophagus clarus TaxI... [more]
A0A397SLM6_9GLOM8.530e-1437.10Fido domain-containing protein n=1 Tax=Glomus cere... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80618contigM-pyrifera_M_contig80618:478..942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score94.7
Seed ortholog evalue3.9e-17
Seed eggNOG ortholog192875.XP_004364453.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fic/DOC family
EggNOG OGs2E09I@1,2S7QK@2759,3AAWR@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size465
Cds size465
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.3439286-CDS-M-pyrifera_M_contig80618:477..9421622816711.3439286-CDS-M-pyrifera_M_contig80618:477..942Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80618 478..942 -
1692278134.46968-CDS-M-pyrifera_M_contig80618:477..9421692278134.46968-CDS-M-pyrifera_M_contig80618:477..942Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80618 478..942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80618.18872.1prot_M-pyrifera_M_contig80618.18872.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80618 478..942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80618.18872.1

>prot_M-pyrifera_M_contig80618.18872.1 ID=prot_M-pyrifera_M_contig80618.18872.1|Name=mRNA_M-pyrifera_M_contig80618.18872.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
LDEHLVKGINAMVFDGMGVSSEWRTVNVKPAGSHFAYCMHEKVSGRINTL
LSFVKTKMENHSELEDRLLIGCFFFSEFLLIHPFANGNGRTARILLSYLL
KSDLVVPFSLARARQPYLDVLEQRMDGQVPCELAAYLAMGARRAAYNAEF
LLMD*
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mRNA from alignment at M-pyrifera_M_contig80618:478..942-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80618.18872.1 ID=mRNA_M-pyrifera_M_contig80618.18872.1|Name=mRNA_M-pyrifera_M_contig80618.18872.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig80618:478..942- (Macrocystis pyrifera P11B4 male)
CTAGACGAGCACCTTGTCAAGGGTATCAATGCCATGGTATTCGACGGCAT GGGCGTATCCAGTGAGTGGAGAACGGTGAATGTGAAGCCGGCTGGCTCGC ATTTCGCCTACTGCATGCATGAGAAGGTGTCTGGCCGTATCAATACCTTG CTATCCTTCGTGAAGACAAAGATGGAAAACCACAGCGAGCTCGAGGACAG GCTACTCATAGGCTGCTTCTTCTTTTCGGAGTTCTTGCTCATTCATCCTT TCGCCAATGGCAACGGCCGGACCGCCCGCATTTTGTTGTCGTACTTGCTG AAGAGCGACCTTGTGGTGCCATTCAGCCTGGCTCGTGCTCGCCAACCATA CCTCGATGTGCTGGAGCAGCGCATGGATGGCCAGGTTCCCTGTGAGTTGG CAGCCTACCTGGCGATGGGTGCGCGGCGAGCCGCCTACAATGCTGAGTTC CTGCTCATGGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80618:478..942-

>mRNA_M-pyrifera_M_contig80618.18872.1 ID=mRNA_M-pyrifera_M_contig80618.18872.1|Name=mRNA_M-pyrifera_M_contig80618.18872.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig80618:478..942- (Macrocystis pyrifera P11B4 male)
CTAGACGAGCACCTTGTCAAGGGTATCAATGCCATGGTATTCGACGGCAT
GGGCGTATCCAGTGAGTGGAGAACGGTGAATGTGAAGCCGGCTGGCTCGC
ATTTCGCCTACTGCATGCATGAGAAGGTGTCTGGCCGTATCAATACCTTG
CTATCCTTCGTGAAGACAAAGATGGAAAACCACAGCGAGCTCGAGGACAG
GCTACTCATAGGCTGCTTCTTCTTTTCGGAGTTCTTGCTCATTCATCCTT
TCGCCAATGGCAACGGCCGGACCGCCCGCATTTTGTTGTCGTACTTGCTG
AAGAGCGACCTTGTGGTGCCATTCAGCCTGGCTCGTGCTCGCCAACCATA
CCTCGATGTGCTGGAGCAGCGCATGGATGGCCAGGTTCCCTGTGAGTTGG
CAGCCTACCTGGCGATGGGTGCGCGGCGAGCCGCCTACAATGCTGAGTTC
CTGCTCATGGACTGACTAGACGAGCACCTTGTCAAGGGTATCAATGCCAT
GGTATTCGACGGCATGGGCGTATCCAGTGAGTGGAGAACGGTGAATGTGA
AGCCGGCTGGCTCGCATTTCGCCTACTGCATGCATGAGAAGGTGTCTGGC
CGTATCAATACCTTGCTATCCTTCGTGAAGACAAAGATGGAAAACCACAG
CGAGCTCGAGGACAGGCTACTCATAGGCTGCTTCTTCTTTTCGGAGTTCT
TGCTCATTCATCCTTTCGCCAATGGCAACGGCCGGACCGCCCGCATTTTG
TTGTCGTACTTGCTGAAGAGCGACCTTGTGGTGCCATTCAGCCTGGCTCG
TGCTCGCCAACCATACCTCGATGTGCTGGAGCAGCGCATGGATGGCCAGG
TTCCCTGTGAGTTGGCAGCCTACCTGGCGATGGGTGCGCGGCGAGCCGCC
TACAATGCTGAGTTCCTGCTCATGGACTGA
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