mRNA_M-pyrifera_M_contig8058.18869.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8058.18869.1
Unique NamemRNA_M-pyrifera_M_contig8058.18869.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8058.18869.1 vs. uniprot
Match: A0A6H5JBB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB5_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.080e-29
Identity = 63/106 (59.43%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 WTFVAAVYDQKSGNATLFVDGIAVTSQTSIPQGGMAPRTGNTDGTTPPPEDKSAGNLGTSLRVGAGYSATGAADGSTGFIGVIDEAFVYGTALTVDELDYLYRAAQ 318
            WTFVAAVY+Q+ GNATL+VDG+A T+QTS+P+GG+  R  + D T       +     T+ R+GAG +A  A DGSTG IG++DE FVYGTAL+VDELDYLYRAAQ
Sbjct:  110 WTFVAAVYNQEVGNATLYVDGVAATAQTSVPEGGVFSRKQSGDNTNV--TAAAVAPFSTAFRIGAGPTAVAAGDGSTGLIGLVDEVFVYGTALSVDELDYLYRAAQ 213
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BLAST of mRNA_M-pyrifera_M_contig8058.18869.1 vs. uniprot
Match: D7FLK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 4.650e-28
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:    1 WTFVAAVYDQKSGNATLFVDGIAVTSQTSIPQGGMAPRTGNTDGTTPPPEDKSAGNLGTSLRVGAGYSATGAADGSTGFIGVIDEAFVYGTALTVDELDYLYRAAQ 318
            W FVAAVY+Q++GNATL+VDG+A  +QTS+P+GG+  R  + D T       +     T+LR+GAG  A  A DGSTG IG +DE FVYGTAL+VDELDYLYRAAQ
Sbjct:  207 WAFVAAVYNQEAGNATLYVDGVAAMAQTSVPEGGVFSRKQSGDNTNV--TAAAVTPFSTALRIGAGPRAVAAGDGSTGLIGFVDEVFVYGTALSVDELDYLYRAAQ 310
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8058.18869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBB5_9PHAE2.080e-2959.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLK0_ECTSI4.650e-2858.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8058contigM-pyrifera_M_contig8058:11005..11331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.4e-24
Seed eggNOG ortholog2880.D7FLK0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.semaphorin-plexin signaling pathway
EggNOG OGsKOG3610@1,KOG3610@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.218297-CDS-M-pyrifera_M_contig8058:11004..113311622816711.218297-CDS-M-pyrifera_M_contig8058:11004..11331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8058 11005..11331 -
1692278134.4177413-CDS-M-pyrifera_M_contig8058:11004..113311692278134.4177413-CDS-M-pyrifera_M_contig8058:11004..11331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8058 11005..11331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8058.18869.1prot_M-pyrifera_M_contig8058.18869.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8058 11005..11331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8058.18869.1

>prot_M-pyrifera_M_contig8058.18869.1 ID=prot_M-pyrifera_M_contig8058.18869.1|Name=mRNA_M-pyrifera_M_contig8058.18869.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
WTFVAAVYDQKSGNATLFVDGIAVTSQTSIPQGGMAPRTGNTDGTTPPPE
DKSAGNLGTSLRVGAGYSATGAADGSTGFIGVIDEAFVYGTALTVDELDY
LYRAAQVG*
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mRNA from alignment at M-pyrifera_M_contig8058:11005..11331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8058.18869.1 ID=mRNA_M-pyrifera_M_contig8058.18869.1|Name=mRNA_M-pyrifera_M_contig8058.18869.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig8058:11005..11331- (Macrocystis pyrifera P11B4 male)
TGGACTTTCGTGGCCGCCGTGTATGACCAAAAGTCCGGAAATGCCACGCT
GTTCGTAGACGGCATTGCGGTCACATCCCAGACATCCATTCCGCAGGGGG
GCATGGCACCGAGGACAGGAAACACTGATGGAACAACGCCCCCGCCAGAG
GACAAGAGCGCGGGAAATTTGGGTACATCGCTGCGGGTCGGGGCTGGATA
CAGCGCGACGGGCGCGGCAGACGGCAGCACTGGTTTCATAGGAGTTATCG
ACGAGGCGTTTGTGTACGGGACGGCGTTGACTGTGGACGAACTCGACTAC
TTGTACCGTGCTGCACAGGTGGGATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8058:11005..11331-

>mRNA_M-pyrifera_M_contig8058.18869.1 ID=mRNA_M-pyrifera_M_contig8058.18869.1|Name=mRNA_M-pyrifera_M_contig8058.18869.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig8058:11005..11331- (Macrocystis pyrifera P11B4 male)
TGGACTTTCGTGGCCGCCGTGTATGACCAAAAGTCCGGAAATGCCACGCT
GTTCGTAGACGGCATTGCGGTCACATCCCAGACATCCATTCCGCAGGGGG
GCATGGCACCGAGGACAGGAAACACTGATGGAACAACGCCCCCGCCAGAG
GACAAGAGCGCGGGAAATTTGGGTACATCGCTGCGGGTCGGGGCTGGATA
CAGCGCGACGGGCGCGGCAGACGGCAGCACTGGTTTCATAGGAGTTATCG
ACGAGGCGTTTGTGTACGGGACGGCGTTGACTGTGGACGAACTCGACTAC
TTGTACCGTGCTGCACAGGTGGGATAGTGGACTTTCGTGGCCGCCGTGTA
TGACCAAAAGTCCGGAAATGCCACGCTGTTCGTAGACGGCATTGCGGTCA
CATCCCAGACATCCATTCCGCAGGGGGGCATGGCACCGAGGACAGGAAAC
ACTGATGGAACAACGCCCCCGCCAGAGGACAAGAGCGCGGGAAATTTGGG
TACATCGCTGCGGGTCGGGGCTGGATACAGCGCGACGGGCGCGGCAGACG
GCAGCACTGGTTTCATAGGAGTTATCGACGAGGCGTTTGTGTACGGGACG
GCGTTGACTGTGGACGAACTCGACTACTTGTACCGTGCTGCACAGGTGGG
ATAG
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