mRNA_M-pyrifera_M_contig80549.18863.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80549.18863.1
Unique NamemRNA_M-pyrifera_M_contig80549.18863.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80549.18863.1 vs. uniprot
Match: A0A0Q7WLU3_9BURK (Uncharacterized protein n=2 Tax=Duganella sp. Root1480D1 TaxID=1736471 RepID=A0A0Q7WLU3_9BURK)

HSP 1 Score: 60.1 bits (144), Expect = 2.710e-7
Identity = 64/213 (30.05%), Postives = 92/213 (43.19%), Query Frame = 1 
Query:    1 LDLDVVVRDAAGVDVTAGFTLVELELVGTGALDGDPALGNVLPAATATARLELVPAATIAAGT-----YRVEASLAATLEGAALVLDLPARFVRVIAAPRLEVEVLLPGRAEADWSTTPLFFEDAEPFPVGVVVRNTGAGPATDLALVSSGPRFVADPNGAPTFASVLDLEVDGLPVAGGWALQSGELGTLAPGAERRILWTAAASTRADLTG 624
            L L V V   A  D TA F +    L G  ++DG    G V P  TAT    ++PA   A  T     Y V A+L    +G    L++    + V   P L ++  +     AD   TP+  E AEPF +GV V+NTG   A +LA+ S+ P+ V +  G      +L   VD  P      ++ G++   A G  +   W    +     TG
Sbjct:   25 LGLPVAVTSNAS-DTTAKFFVRISNLDGIASVDGT---GVVQPKTTATIDWLMIPAPGAAGATPFGKKYLVGATLKYKFQGEVQTLEVDPDVITVKPLPSLTLDYFMTQDVVADDPLTPII-EAAEPFTLGVRVKNTGLAKAANLAIDSAQPKIVENNQGLLIGFQLLGSFVDDSPAQNSLLMKFGDI---AGGTSKMGRWIMQTTLAGKFTG 229
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BLAST of mRNA_M-pyrifera_M_contig80549.18863.1 vs. uniprot
Match: A0A0Q7W1Y3_9BURK (Uncharacterized protein n=1 Tax=Duganella sp. Root1480D1 TaxID=1736471 RepID=A0A0Q7W1Y3_9BURK)

HSP 1 Score: 59.7 bits (143), Expect = 2.930e-7
Identity = 59/188 (31.38%), Postives = 85/188 (45.21%), Query Frame = 1 
Query:    1 LDLDVVVRDAAGVDVTAGFTLVELELVGTGALDGDPALGNVLPAATATARLELVPAATIAAGT-----YRVEASLAATLEGAALVLDLPARFVRVIAAPRLEVEVLLPGRAEADWSTTPLFFEDAEPFPVGVVVRNTGAGPATDLALVSSGPRFVADPNGAPTFASVLDLEVDGLPVAGGWALQSGEL 549
            L L V V   A  D TA F +    L G  ++DG    G V P  TAT    ++PA   A  T     Y V A+L    +G    L++    + V   P L ++  +     AD   TP+  E AEPF +GV V+NTG   A +LA+ S+ P+ V +  G      +L   VD  P      ++ G++
Sbjct:   25 LGLPVAVTSNAS-DTTAKFFVRISNLDGIASVDGT---GVVQPKTTATIDWLMIPAPGAAGATPFGKKYLVGATLKYKFQGEVQTLEVDPDVITVKPLPSLTLDYFMTQDVVADDPLTPII-EAAEPFTLGVRVKNTGLAKAANLAIDSAQPKIVENNQGLLIGFQLLGSFVDDSPAQNSLLMKFGDI 207
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BLAST of mRNA_M-pyrifera_M_contig80549.18863.1 vs. uniprot
Match: UPI001E5948CF (dockerin type I domain-containing protein n=1 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI001E5948CF)

HSP 1 Score: 56.6 bits (135), Expect = 9.310e-6
Identity = 53/175 (30.29%), Postives = 79/175 (45.14%), Query Frame = 1 
Query:    7 LDVVVRDAAGVDVTAGFTLVELELVGTGALDGDPALGNVLPAATATARLELVPAATIAAGTYRVEASLAATLEGAALVLDLPARFVRVIAAPRLEVEVLLPGRAEADWSTTPLFFEDAEPFPVGVVVRNTGAGPATDLALVSSGPRFVADPNGAPTFASVLDLEVDGLPVAGGWA 531
            +DVVV DA G D T  F   + +  G   +DG   L   L   +    + L  AA      Y V   +  T  G  + +DL    ++V   P L++         AD   TP   E AEPF +GV+V+N+G G A +L + S+ P+ + +  G      ++D E+    V GG A
Sbjct: 3331 VDVVVYDADGNDATDLFVFRDPDFSGFSDVDGSGELAAGLLGNSNWVLIPLSDAAPDLVTEYYVGGQITYTDTGRQVTIDLEPVSIKVRPQPELDLVYFHQRDVIADDPFTPEI-EQAEPFALGVLVKNSGGGAANNLRIDSAQPKIIENEKGL-----LIDFEIISTLVNGGSA 3499
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BLAST of mRNA_M-pyrifera_M_contig80549.18863.1 vs. uniprot
Match: A0A7Y5ET63_9BACT (Fibronectin type III domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7Y5ET63_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 3.040e-5
Identity = 51/167 (30.54%), Postives = 76/167 (45.51%), Query Frame = 1 
Query:   25 DAAGVDVTAGFTLVELELVGTGALDGDPALGNVLPAATATARLELVP---AATIAAGTYRVEASLAATLEGAALVLDLPARFVRVIAAPRLEVEVLLPGRAEADWSTTPLFFEDAEPFPVGVVVRNTGAGPATDLALVSSGPRFVADPNGAPTFASVLDLEVDGLPV 516
            DA G      F +    L    A+DG    G + P   A     +VP   AA + A  Y V   L    EGA  V+ L    + V+  PRL ++  +  R  +D   TP   E AEPF +G++++N G G A D+ + SS PR V +  G      ++  +V+  P+
Sbjct: 2302 DAEGNPADDKFAIYPPTLRNVTAVDGT---GLLPPTTIANINWIIVPRENAAPMQATRYYVGGLLQFEFEGATHVVRLEPMPIDVLPDPRLVLDYFMQSRVYSDDPFTPEV-ERAEPFSLGLILKNIGFGAARDVQIQSSQPRIVENERGLLIDFQIVGSQVNDRPI 2464
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80549.18863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0Q7WLU3_9BURK2.710e-730.05Uncharacterized protein n=2 Tax=Duganella sp. Root... [more]
A0A0Q7W1Y3_9BURK2.930e-731.38Uncharacterized protein n=1 Tax=Duganella sp. Root... [more]
UPI001E5948CF9.310e-630.29dockerin type I domain-containing protein n=1 Tax=... [more]
A0A7Y5ET63_9BACT3.040e-530.54Fibronectin type III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80549contigM-pyrifera_M_contig80549:118..759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size642
Cds size642
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.0137897-CDS-M-pyrifera_M_contig80549:117..7591622816711.0137897-CDS-M-pyrifera_M_contig80549:117..759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80549 118..759 -
1692278134.3194895-CDS-M-pyrifera_M_contig80549:117..7591692278134.3194895-CDS-M-pyrifera_M_contig80549:117..759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80549 118..759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80549.18863.1prot_M-pyrifera_M_contig80549.18863.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80549 118..759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80549.18863.1

>prot_M-pyrifera_M_contig80549.18863.1 ID=prot_M-pyrifera_M_contig80549.18863.1|Name=mRNA_M-pyrifera_M_contig80549.18863.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=214bp
LDLDVVVRDAAGVDVTAGFTLVELELVGTGALDGDPALGNVLPAATATAR
LELVPAATIAAGTYRVEASLAATLEGAALVLDLPARFVRVIAAPRLEVEV
LLPGRAEADWSTTPLFFEDAEPFPVGVVVRNTGAGPATDLALVSSGPRFV
ADPNGAPTFASVLDLEVDGLPVAGGWALQSGELGTLAPGAERRILWTAAA
STRADLTGLPLQFA
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mRNA from alignment at M-pyrifera_M_contig80549:118..759-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80549.18863.1 ID=mRNA_M-pyrifera_M_contig80549.18863.1|Name=mRNA_M-pyrifera_M_contig80549.18863.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig80549:118..759- (Macrocystis pyrifera P11B4 male)
TTGGACCTGGACGTCGTCGTGCGCGACGCGGCGGGCGTCGATGTGACCGC
GGGCTTCACGCTCGTCGAGCTGGAGCTGGTCGGCACGGGCGCGCTGGACG
GCGATCCGGCGCTCGGCAACGTGCTGCCCGCCGCCACCGCGACCGCGCGC
CTCGAGCTCGTGCCGGCGGCGACGATCGCGGCCGGCACCTACCGCGTCGA
GGCGAGCCTCGCCGCGACGCTCGAGGGCGCCGCGCTCGTGCTCGACCTGC
CCGCGCGCTTCGTGCGCGTGATCGCGGCGCCGCGCCTGGAGGTCGAGGTG
CTGCTGCCCGGTCGCGCCGAGGCCGACTGGTCGACGACGCCGCTGTTCTT
CGAGGACGCCGAGCCGTTCCCCGTCGGCGTCGTGGTGCGCAATACCGGGG
CGGGGCCGGCGACGGACCTGGCGCTGGTCTCGAGCGGGCCGCGCTTCGTC
GCCGATCCGAATGGCGCGCCGACCTTTGCGAGCGTGCTCGACCTCGAGGT
CGACGGGCTGCCGGTCGCCGGCGGCTGGGCGTTGCAGTCCGGCGAGCTCG
GCACGCTCGCGCCCGGCGCGGAGCGGCGCATCCTGTGGACCGCCGCGGCG
AGCACGCGCGCGGACCTGACGGGCCTGCCGCTGCAGTTCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80549:118..759-

>mRNA_M-pyrifera_M_contig80549.18863.1 ID=mRNA_M-pyrifera_M_contig80549.18863.1|Name=mRNA_M-pyrifera_M_contig80549.18863.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1284bp|location=Sequence derived from alignment at M-pyrifera_M_contig80549:118..759- (Macrocystis pyrifera P11B4 male)
TTGGACCTGGACGTCGTCGTGCGCGACGCGGCGGGCGTCGATGTGACCGC
GGGCTTCACGCTCGTCGAGCTGGAGCTGGTCGGCACGGGCGCGCTGGACG
GCGATCCGGCGCTCGGCAACGTGCTGCCCGCCGCCACCGCGACCGCGCGC
CTCGAGCTCGTGCCGGCGGCGACGATCGCGGCCGGCACCTACCGCGTCGA
GGCGAGCCTCGCCGCGACGCTCGAGGGCGCCGCGCTCGTGCTCGACCTGC
CCGCGCGCTTCGTGCGCGTGATCGCGGCGCCGCGCCTGGAGGTCGAGGTG
CTGCTGCCCGGTCGCGCCGAGGCCGACTGGTCGACGACGCCGCTGTTCTT
CGAGGACGCCGAGCCGTTCCCCGTCGGCGTCGTGGTGCGCAATACCGGGG
CGGGGCCGGCGACGGACCTGGCGCTGGTCTCGAGCGGGCCGCGCTTCGTC
GCCGATCCGAATGGCGCGCCGACCTTTGCGAGCGTGCTCGACCTCGAGGT
CGACGGGCTGCCGGTCGCCGGCGGCTGGGCGTTGCAGTCCGGCGAGCTCG
GCACGCTCGCGCCCGGCGCGGAGCGGCGCATCCTGTGGACCGCCGCGGCG
AGCACGCGCGCGGACCTGACGGGCCTGCCGCTGCAGTTCGCGTTGGACCT
GGACGTCGTCGTGCGCGACGCGGCGGGCGTCGATGTGACCGCGGGCTTCA
CGCTCGTCGAGCTGGAGCTGGTCGGCACGGGCGCGCTGGACGGCGATCCG
GCGCTCGGCAACGTGCTGCCCGCCGCCACCGCGACCGCGCGCCTCGAGCT
CGTGCCGGCGGCGACGATCGCGGCCGGCACCTACCGCGTCGAGGCGAGCC
TCGCCGCGACGCTCGAGGGCGCCGCGCTCGTGCTCGACCTGCCCGCGCGC
TTCGTGCGCGTGATCGCGGCGCCGCGCCTGGAGGTCGAGGTGCTGCTGCC
CGGTCGCGCCGAGGCCGACTGGTCGACGACGCCGCTGTTCTTCGAGGACG
CCGAGCCGTTCCCCGTCGGCGTCGTGGTGCGCAATACCGGGGCGGGGCCG
GCGACGGACCTGGCGCTGGTCTCGAGCGGGCCGCGCTTCGTCGCCGATCC
GAATGGCGCGCCGACCTTTGCGAGCGTGCTCGACCTCGAGGTCGACGGGC
TGCCGGTCGCCGGCGGCTGGGCGTTGCAGTCCGGCGAGCTCGGCACGCTC
GCGCCCGGCGCGGAGCGGCGCATCCTGTGGACCGCCGCGGCGAGCACGCG
CGCGGACCTGACGGGCCTGCCGCTGCAGTTCGCG
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