mRNA_M-pyrifera_M_contig80501.18860.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80501.18860.1
Unique NamemRNA_M-pyrifera_M_contig80501.18860.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig80501.18860.1 vs. uniprot
Match: A0A1G0PFD0_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteria bacterium GWB2_35_6b TaxID=1798424 RepID=A0A1G0PFD0_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.460e-8
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 YDSNNVEHQLIKSTIDKYHKGLTMGDGDLVTKALADQFFMYNGNYSGDAINWQAHMYL 174
            Y  N  +  L K  +  +  G+   + +L+  ++ + F M+NGNYSGD +NWQAHMYL
Sbjct:   31 YFLNESDSVLAKQAVTNFQTGIINNNAELLKNSVWEDFIMFNGNYSGDPVNWQAHMYL 88
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80501.18860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1G0PFD0_9BACT1.460e-839.66Uncharacterized protein n=1 Tax=Ignavibacteria bac... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80501contigM-pyrifera_M_contig80501:758..931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.9107308-CDS-M-pyrifera_M_contig80501:757..9311622816710.9107308-CDS-M-pyrifera_M_contig80501:757..931Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80501 758..931 +
1692278134.2805312-CDS-M-pyrifera_M_contig80501:757..9311692278134.2805312-CDS-M-pyrifera_M_contig80501:757..931Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80501 758..931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80501.18860.1prot_M-pyrifera_M_contig80501.18860.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80501 758..931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80501.18860.1

>prot_M-pyrifera_M_contig80501.18860.1 ID=prot_M-pyrifera_M_contig80501.18860.1|Name=mRNA_M-pyrifera_M_contig80501.18860.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
YDSNNVEHQLIKSTIDKYHKGLTMGDGDLVTKALADQFFMYNGNYSGDAI
NWQAHMYL
back to top

mRNA from alignment at M-pyrifera_M_contig80501:758..931+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80501.18860.1 ID=mRNA_M-pyrifera_M_contig80501.18860.1|Name=mRNA_M-pyrifera_M_contig80501.18860.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig80501:758..931+ (Macrocystis pyrifera P11B4 male)
TATGATTCGAATAATGTCGAACATCAGTTGATCAAGTCAACCATTGATAA
ATACCATAAGGGGCTGACAATGGGTGACGGTGATTTGGTCACGAAGGCCC
TGGCGGATCAATTTTTTATGTACAACGGGAATTATTCAGGAGATGCGATC
AATTGGCAGGCACATATGTATTTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig80501:758..931+

>mRNA_M-pyrifera_M_contig80501.18860.1 ID=mRNA_M-pyrifera_M_contig80501.18860.1|Name=mRNA_M-pyrifera_M_contig80501.18860.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig80501:758..931+ (Macrocystis pyrifera P11B4 male)
TATGATTCGAATAATGTCGAACATCAGTTGATCAAGTCAACCATTGATAA
ATACCATAAGGGGCTGACAATGGGTGACGGTGATTTGGTCACGAAGGCCC
TGGCGGATCAATTTTTTATGTACAACGGGAATTATTCAGGAGATGCGATC
AATTGGCAGGCACATATGTATTTGTATGATTCGAATAATGTCGAACATCA
GTTGATCAAGTCAACCATTGATAAATACCATAAGGGGCTGACAATGGGTG
ACGGTGATTTGGTCACGAAGGCCCTGGCGGATCAATTTTTTATGTACAAC
GGGAATTATTCAGGAGATGCGATCAATTGGCAGGCACATATGTATTTG
back to top