mRNA_M-pyrifera_M_contig80501.18859.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80501.18859.1
Unique NamemRNA_M-pyrifera_M_contig80501.18859.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80501.18859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80501contigM-pyrifera_M_contig80501:230..751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size522
Cds size522
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.8712664-CDS-M-pyrifera_M_contig80501:229..7511622816710.8712664-CDS-M-pyrifera_M_contig80501:229..751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80501 230..751 +
1692278134.2659488-CDS-M-pyrifera_M_contig80501:229..7511692278134.2659488-CDS-M-pyrifera_M_contig80501:229..751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80501 230..751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80501.18859.1prot_M-pyrifera_M_contig80501.18859.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80501 230..751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80501.18859.1

>prot_M-pyrifera_M_contig80501.18859.1 ID=prot_M-pyrifera_M_contig80501.18859.1|Name=mRNA_M-pyrifera_M_contig80501.18859.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
MRKLLLVLFTLVSLQGFGQYRSYTCQFADNGMLSALVGTWKVEAKDRTSP
GNYELNAGISVISNGIRGCSIRESYQGIFKEKSYATEAAFLLTDSLQLQR
VYFDSEHTSTMIFEGDINTEGMKLFWFRNSERKKMQVKYELTLEGSDSFV
WETHLTTDFGETWQLTHHWQYTRV
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mRNA from alignment at M-pyrifera_M_contig80501:230..751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80501.18859.1 ID=mRNA_M-pyrifera_M_contig80501.18859.1|Name=mRNA_M-pyrifera_M_contig80501.18859.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig80501:230..751+ (Macrocystis pyrifera P11B4 male)
ATGCGCAAATTACTTTTAGTATTATTTACTCTGGTCAGCCTACAAGGCTT
TGGTCAATACCGAAGCTACACTTGCCAATTTGCTGATAATGGAATGCTGT
CTGCTTTGGTAGGAACATGGAAGGTGGAGGCCAAAGACCGAACTTCCCCA
GGCAATTACGAACTCAATGCAGGCATTTCGGTAATTTCTAATGGAATTCG
AGGTTGCAGCATTCGTGAGTCGTATCAGGGTATCTTTAAAGAGAAAAGTT
ACGCTACGGAAGCTGCCTTTCTATTGACTGATTCTTTGCAGCTGCAACGT
GTATACTTTGATTCAGAGCATACGAGCACTATGATTTTCGAGGGAGATAT
AAACACTGAAGGAATGAAACTATTCTGGTTCAGAAATAGCGAGCGTAAGA
AAATGCAGGTCAAATATGAACTGACTTTGGAAGGTTCAGATTCTTTTGTC
TGGGAAACACACTTAACAACAGATTTTGGAGAAACCTGGCAACTAACACA
TCACTGGCAGTACACTCGTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80501:230..751+

>mRNA_M-pyrifera_M_contig80501.18859.1 ID=mRNA_M-pyrifera_M_contig80501.18859.1|Name=mRNA_M-pyrifera_M_contig80501.18859.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig80501:230..751+ (Macrocystis pyrifera P11B4 male)
ATGCGCAAATTACTTTTAGTATTATTTACTCTGGTCAGCCTACAAGGCTT
TGGTCAATACCGAAGCTACACTTGCCAATTTGCTGATAATGGAATGCTGT
CTGCTTTGGTAGGAACATGGAAGGTGGAGGCCAAAGACCGAACTTCCCCA
GGCAATTACGAACTCAATGCAGGCATTTCGGTAATTTCTAATGGAATTCG
AGGTTGCAGCATTCGTGAGTCGTATCAGGGTATCTTTAAAGAGAAAAGTT
ACGCTACGGAAGCTGCCTTTCTATTGACTGATTCTTTGCAGCTGCAACGT
GTATACTTTGATTCAGAGCATACGAGCACTATGATTTTCGAGGGAGATAT
AAACACTGAAGGAATGAAACTATTCTGGTTCAGAAATAGCGAGCGTAAGA
AAATGCAGGTCAAATATGAACTGACTTTGGAAGGTTCAGATTCTTTTGTC
TGGGAAACACACTTAACAACAGATTTTGGAGAAACCTGGCAACTAACACA
TCACTGGCAGTACACTCGTGTGATGCGCAAATTACTTTTAGTATTATTTA
CTCTGGTCAGCCTACAAGGCTTTGGTCAATACCGAAGCTACACTTGCCAA
TTTGCTGATAATGGAATGCTGTCTGCTTTGGTAGGAACATGGAAGGTGGA
GGCCAAAGACCGAACTTCCCCAGGCAATTACGAACTCAATGCAGGCATTT
CGGTAATTTCTAATGGAATTCGAGGTTGCAGCATTCGTGAGTCGTATCAG
GGTATCTTTAAAGAGAAAAGTTACGCTACGGAAGCTGCCTTTCTATTGAC
TGATTCTTTGCAGCTGCAACGTGTATACTTTGATTCAGAGCATACGAGCA
CTATGATTTTCGAGGGAGATATAAACACTGAAGGAATGAAACTATTCTGG
TTCAGAAATAGCGAGCGTAAGAAAATGCAGGTCAAATATGAACTGACTTT
GGAAGGTTCAGATTCTTTTGTCTGGGAAACACACTTAACAACAGATTTTG
GAGAAACCTGGCAACTAACACATCACTGGCAGTACACTCGTGTG
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