mRNA_M-pyrifera_M_contig80499.18858.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80499.18858.1
Unique NamemRNA_M-pyrifera_M_contig80499.18858.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80499.18858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80499contigM-pyrifera_M_contig80499:343..723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.4
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog13037.EHJ76329
KEGG koko:K08399
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001653,GO:0001667,GO:0001837,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0004888,GO:0004930,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006928,GO:0007154,GO:0007162,GO:0007165,GO:0007186,GO:0007218,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007564,GO:0008150,GO:0008188,GO:0008528,GO:0009888,GO:0009987,GO:0010631,GO:0016020,GO:0016021,GO:0016477,GO:0016500,GO:0019953,GO:0022407,GO:0022408,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030155,GO:0030707,GO:0030709,GO:0030855,GO:0031224,GO:0031226,GO:0032501,GO:0032502,GO:0032504,GO:0036335,GO:0038023,GO:0040011,GO:0042592,GO:0044425,GO:0044459,GO:0044464,GO:0044703,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048609,GO:0048731,GO:0048762,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051239,GO:0051674,GO:0051704,GO:0051716,GO:0060089,GO:0060232,GO:0060429,GO:0060485,GO:0065007,GO:0065008,GO:0071944,GO:0090130,GO:0090132,GO:2000026
EggNOG free text desc.7 transmembrane receptor (rhodopsin family)
EggNOG OGs38DRQ@33154,3B9GE@33208,3CSEC@33213,3SK59@50557,41VPE@6656,443H1@7088,COG4886@1,KOG0619@2759,KOG2087@1,KOG2087@2759
COG Functional cat.T
Best tax levelLepidoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04030
Exons1
Model size381
Cds size381
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.8360155-CDS-M-pyrifera_M_contig80499:342..7231622816710.8360155-CDS-M-pyrifera_M_contig80499:342..723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80499 343..723 +
1692278134.2479165-CDS-M-pyrifera_M_contig80499:342..7231692278134.2479165-CDS-M-pyrifera_M_contig80499:342..723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80499 343..723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80499.18858.1prot_M-pyrifera_M_contig80499.18858.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80499 343..723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80499.18858.1

>prot_M-pyrifera_M_contig80499.18858.1 ID=prot_M-pyrifera_M_contig80499.18858.1|Name=mRNA_M-pyrifera_M_contig80499.18858.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
MEGGRVSLRGRGLGMLPPLPEDVRLLDVGENDLTALPALPSVRVLLAGGN
FLSVGALERISRHGSSIEALEVDENSLSGPLLPLDRMPRLQFLSLRKNSL
SGLTGLSRCAPALRVLLLDGNTVEGRL
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mRNA from alignment at M-pyrifera_M_contig80499:343..723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80499.18858.1 ID=mRNA_M-pyrifera_M_contig80499.18858.1|Name=mRNA_M-pyrifera_M_contig80499.18858.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig80499:343..723+ (Macrocystis pyrifera P11B4 male)
ATGGAAGGTGGGCGGGTTTCCCTGCGAGGTCGAGGATTGGGGATGCTACC
ACCACTCCCAGAGGATGTGCGATTGCTTGATGTTGGGGAAAATGATCTTA
CAGCATTGCCAGCGCTACCTAGTGTACGGGTGTTGCTTGCAGGAGGGAAT
TTCTTGTCTGTGGGGGCTTTGGAGCGAATTTCTCGCCATGGTAGCTCTAT
AGAGGCACTGGAAGTAGATGAGAACTCGCTCTCCGGTCCACTTCTCCCAC
TAGACCGCATGCCGCGCTTGCAATTCCTGTCCCTCAGGAAAAACTCACTC
TCTGGCCTCACTGGACTTTCCCGATGCGCCCCAGCACTACGAGTGCTTTT
ATTGGATGGAAATACTGTGGAGGGACGATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80499:343..723+

>mRNA_M-pyrifera_M_contig80499.18858.1 ID=mRNA_M-pyrifera_M_contig80499.18858.1|Name=mRNA_M-pyrifera_M_contig80499.18858.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig80499:343..723+ (Macrocystis pyrifera P11B4 male)
ATGGAAGGTGGGCGGGTTTCCCTGCGAGGTCGAGGATTGGGGATGCTACC
ACCACTCCCAGAGGATGTGCGATTGCTTGATGTTGGGGAAAATGATCTTA
CAGCATTGCCAGCGCTACCTAGTGTACGGGTGTTGCTTGCAGGAGGGAAT
TTCTTGTCTGTGGGGGCTTTGGAGCGAATTTCTCGCCATGGTAGCTCTAT
AGAGGCACTGGAAGTAGATGAGAACTCGCTCTCCGGTCCACTTCTCCCAC
TAGACCGCATGCCGCGCTTGCAATTCCTGTCCCTCAGGAAAAACTCACTC
TCTGGCCTCACTGGACTTTCCCGATGCGCCCCAGCACTACGAGTGCTTTT
ATTGGATGGAAATACTGTGGAGGGACGATTGATGGAAGGTGGGCGGGTTT
CCCTGCGAGGTCGAGGATTGGGGATGCTACCACCACTCCCAGAGGATGTG
CGATTGCTTGATGTTGGGGAAAATGATCTTACAGCATTGCCAGCGCTACC
TAGTGTACGGGTGTTGCTTGCAGGAGGGAATTTCTTGTCTGTGGGGGCTT
TGGAGCGAATTTCTCGCCATGGTAGCTCTATAGAGGCACTGGAAGTAGAT
GAGAACTCGCTCTCCGGTCCACTTCTCCCACTAGACCGCATGCCGCGCTT
GCAATTCCTGTCCCTCAGGAAAAACTCACTCTCTGGCCTCACTGGACTTT
CCCGATGCGCCCCAGCACTACGAGTGCTTTTATTGGATGGAAATACTGTG
GAGGGACGATTG
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