mRNA_M-pyrifera_M_contig80498.18857.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80498.18857.1
Unique NamemRNA_M-pyrifera_M_contig80498.18857.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80498.18857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80498contigM-pyrifera_M_contig80498:313..636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.7853687-CDS-M-pyrifera_M_contig80498:312..6301622816710.7853687-CDS-M-pyrifera_M_contig80498:312..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80498 313..630 -
1692278134.2273428-CDS-M-pyrifera_M_contig80498:312..6301692278134.2273428-CDS-M-pyrifera_M_contig80498:312..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80498 313..630 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.7993793-UTR-M-pyrifera_M_contig80498:630..6361622816710.7993793-UTR-M-pyrifera_M_contig80498:630..636Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80498 631..636 -
1692278134.2375407-UTR-M-pyrifera_M_contig80498:630..6361692278134.2375407-UTR-M-pyrifera_M_contig80498:630..636Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80498 631..636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80498.18857.1prot_M-pyrifera_M_contig80498.18857.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80498 313..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80498.18857.1

>prot_M-pyrifera_M_contig80498.18857.1 ID=prot_M-pyrifera_M_contig80498.18857.1|Name=mRNA_M-pyrifera_M_contig80498.18857.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MQVVEKLGGEIVDVLDVGMGRGGMLDYIDQKIGVKGGLYGVDISKASIDY
CTKHHPKFHVALIEPGPLSLPDSFPTPFSLSFHSATLIHIPLEEQGDFLR
ALAGVS
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mRNA from alignment at M-pyrifera_M_contig80498:313..636-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80498.18857.1 ID=mRNA_M-pyrifera_M_contig80498.18857.1|Name=mRNA_M-pyrifera_M_contig80498.18857.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig80498:313..636- (Macrocystis pyrifera P11B4 male)
AGATTGATGCAAGTGGTTGAGAAGCTGGGAGGGGAAATTGTAGATGTGCT
CGATGTAGGAATGGGGAGGGGAGGGATGTTGGATTACATTGACCAGAAAA
TCGGAGTCAAGGGTGGCTTGTATGGAGTAGATATCTCCAAGGCATCTATC
GACTACTGTACCAAGCATCATCCGAAGTTCCATGTCGCTTTGATTGAACC
AGGACCCCTCTCACTCCCTGATTCATTCCCAACGCCGTTTTCACTCTCAT
TCCACTCCGCTACGCTCATTCACATTCCTTTGGAAGAGCAAGGTGATTTC
TTACGTGCACTTGCCGGAGTTTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80498:313..636-

>mRNA_M-pyrifera_M_contig80498.18857.1 ID=mRNA_M-pyrifera_M_contig80498.18857.1|Name=mRNA_M-pyrifera_M_contig80498.18857.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig80498:313..636- (Macrocystis pyrifera P11B4 male)
ATGCAAGTGGTTGAGAAGCTGGGAGGGGAAATTGTAGATGTGCTCGATGT
AGGAATGGGGAGGGGAGGGATGTTGGATTACATTGACCAGAAAATCGGAG
TCAAGGGTGGCTTGTATGGAGTAGATATCTCCAAGGCATCTATCGACTAC
TGTACCAAGCATCATCCGAAGTTCCATGTCGCTTTGATTGAACCAGGACC
CCTCTCACTCCCTGATTCATTCCCAACGCCGTTTTCACTCTCATTCCACT
CCGCTACGCTCATTCACATTCCTTTGGAAGAGCAAGGTGATTTCTTACGT
GCACTTGCCGGAGTTTCCATGCAAGTGGTTGAGAAGCTGGGAGGGGAAAT
TGTAGATGTGCTCGATGTAGGAATGGGGAGGGGAGGGATGTTGGATTACA
TTGACCAGAAAATCGGAGTCAAGGGTGGCTTGTATGGAGTAGATATCTCC
AAGGCATCTATCGACTACTGTACCAAGCATCATCCGAAGTTCCATGTCGC
TTTGATTGAACCAGGACCCCTCTCACTCCCTGATTCATTCCCAACGCCGT
TTTCACTCTCATTCCACTCCGCTACGCTCATTCACATTCCTTTGGAAGAG
CAAGGTGATTTCTTACGTGCACTTGCCGGAGTTTCC
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