mRNA_M-pyrifera_M_contig80496.18854.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80496.18854.1
Unique NamemRNA_M-pyrifera_M_contig80496.18854.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80496.18854.1 vs. uniprot
Match: A0A2E7KBY1_9PLAN (Cytochrome D ubiquinol oxidase subunit II n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KBY1_9PLAN)

HSP 1 Score: 192 bits (487), Expect = 1.840e-58
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1
Query:    1 FYSVYNSMRYVNERLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSELAPAPGEEEEEEE 300
            FYSVYNSMRYVN RLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSELAPAPGEEEEEEE
Sbjct:  257 FYSVYNSMRYVNGRLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSELAPAPGEEEEEEE 356          
BLAST of mRNA_M-pyrifera_M_contig80496.18854.1 vs. uniprot
Match: A0A355GM83_9PLAN (Cytochrome D ubiquinol oxidase subunit II (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355GM83_9PLAN)

HSP 1 Score: 166 bits (420), Expect = 7.630e-51
Identity = 84/100 (84.00%), Postives = 92/100 (92.00%), Query Frame = 1
Query:    1 FYSVYNSMRYVNERLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSELAPAPGEEEEEEE 300
            FYSVYNSMRYV  RLVLRLHVEPSNEF+E+LN EFKDIL+SGIITKV+AH+LE DD+HL DLPRISL+FNRKNLGRLRQMIDRINSELAP   EEE+EEE
Sbjct:   57 FYSVYNSMRYVKGRLVLRLHVEPSNEFIEKLNDEFKDILDSGIITKVNAHELEKDDDHLTDLPRISLMFNRKNLGRLRQMIDRINSELAPQSSEEEDEEE 156          
BLAST of mRNA_M-pyrifera_M_contig80496.18854.1 vs. uniprot
Match: A0A518IE72_9PLAN (Putative lysine decarboxylase n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IE72_9PLAN)

HSP 1 Score: 160 bits (404), Expect = 4.900e-46
Identity = 82/98 (83.67%), Postives = 87/98 (88.78%), Query Frame = 1
Query:    1 FYSVYNSMRYVNERLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSELAPAPGEEEEE 294
            FYSVYNSMRYV  RLVLRLHVEPS++FVEQLN EFKDILESGIITKV+ H+LE DD+HL DLPRISLLFNRKNLGRLRQMIDRIN ELAP   EEE E
Sbjct:  257 FYSVYNSMRYVKGRLVLRLHVEPSSQFVEQLNDEFKDILESGIITKVETHELEKDDDHLADLPRISLLFNRKNLGRLRQMIDRINDELAPKNDEEEAE 354          
BLAST of mRNA_M-pyrifera_M_contig80496.18854.1 vs. uniprot
Match: A0A517VVU3_9PLAN (Putative lysine decarboxylase n=12 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VVU3_9PLAN)

HSP 1 Score: 155 bits (392), Expect = 2.960e-44
Identity = 78/97 (80.41%), Postives = 86/97 (88.66%), Query Frame = 1
Query:    1 FYSVYNSMRYVNERLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSELAPAPGEEEE 291
            FYSVYNSMRYV+ RLVLRLHVEPSNEF+E+LN EFKDIL SGII+KVDAH+LE DD HL DLPRISL+FNRKNLGRLRQMIDRIN+EL+P    E E
Sbjct:  257 FYSVYNSMRYVSGRLVLRLHVEPSNEFIEKLNDEFKDILASGIISKVDAHELEKDDSHLTDLPRISLIFNRKNLGRLRQMIDRINTELSPQLANEAE 353          
BLAST of mRNA_M-pyrifera_M_contig80496.18854.1 vs. uniprot
Match: UPI0014221570 (TIGR00730 family Rossman fold protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI0014221570)

HSP 1 Score: 127 bits (319), Expect = 2.240e-33
Identity = 63/91 (69.23%), Postives = 73/91 (80.22%), Query Frame = 1
Query:    1 FYSVYNSMRYVNERLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSELAPA 273
            FY VYNSMRYV +RLVLRLH EPS+E VE+LN EF DI+ESG I K   H+LE DDEHL DLPR+SL FNR+ +GRLRQM+DR+N EL  A
Sbjct:  257 FYDVYNSMRYVKDRLVLRLHREPSDELVEELNEEFSDIVESGKIEKTAMHELEADDEHLRDLPRLSLRFNRRGVGRLRQMVDRLNEELNDA 347          
BLAST of mRNA_M-pyrifera_M_contig80496.18854.1 vs. uniprot
Match: A0A836RHS7_9PLAN (TIGR00730 family Rossman fold protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RHS7_9PLAN)

HSP 1 Score: 124 bits (311), Expect = 2.710e-32
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    1 FYSVYNSMRYVNERLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSEL 264
            FYSVYNSMRYVN +LVLRLH EPS+E VE+LN++F D+LE G I K   H LE DD HL DLPR++L FNRK++GRLRQ++DRIN+EL
Sbjct:  258 FYSVYNSMRYVNGKLVLRLHREPSDELVERLNMDFADLLERGRIEKATVHRLEADDAHLRDLPRLALYFNRKSMGRLRQLVDRINAEL 345          
BLAST of mRNA_M-pyrifera_M_contig80496.18854.1 vs. uniprot
Match: UPI0019B9118F (TIGR00730 family Rossman fold protein n=1 Tax=Fuerstiella sp. TaxID=1936112 RepID=UPI0019B9118F)

HSP 1 Score: 121 bits (303), Expect = 4.470e-31
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 1
Query:    1 FYSVYNSMRYVNERLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSELAP 270
            FYSVYNSMR+V E L+LRLH+EP +EFV +LN EF DI  SG I K   H LE+DD+HLV+LPR++L+FNRK +GRLRQM+D IN EL P
Sbjct:  257 FYSVYNSMRFVRELLILRLHIEPPDEFVARLNDEFHDICASGRIEKAPVHRLEVDDDHLVNLPRLNLVFNRKAVGRLRQMVDVINCELEP 346          
BLAST of mRNA_M-pyrifera_M_contig80496.18854.1 vs. uniprot
Match: A0A517QWF4_9BACT (Putative lysine decarboxylase n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517QWF4_9BACT)

HSP 1 Score: 119 bits (299), Expect = 2.230e-30
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 FYSVYNSMRYVNERLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSEL 264
            FY VYNSMRYV  +LVLRLH+EPS+E VE+LN+EF DI+E G I KV  H LE DD HL DLPR+   FNRK +GRLRQM+D +N EL
Sbjct:  270 FYCVYNSMRYVKGKLVLRLHLEPSDELVERLNVEFADIVERGRIEKVGTHPLEADDAHLADLPRLQFRFNRKYIGRLRQMVDVLNEEL 357          
BLAST of mRNA_M-pyrifera_M_contig80496.18854.1 vs. uniprot
Match: A0A2E7D6U7_9PLAN (Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D6U7_9PLAN)

HSP 1 Score: 119 bits (298), Expect = 2.690e-30
Identity = 60/88 (68.18%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 FYSVYNSMRYVNERLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSEL 264
            FYSVYNS+RYV  RLVLRLHV+P ++FVE+LN EF DI+E G I K + H LE DDEHL DL R+ L FNRK +GRLRQMID IN EL
Sbjct:  258 FYSVYNSLRYVRGRLVLRLHVQPDDDFVERLNDEFSDIVEKGRIEKTETHKLEADDEHLKDLHRLGLDFNRKCIGRLRQMIDLINEEL 345          
BLAST of mRNA_M-pyrifera_M_contig80496.18854.1 vs. uniprot
Match: A0A3L7P2F0_9BACT (TIGR00730 family Rossman fold protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7P2F0_9BACT)

HSP 1 Score: 117 bits (294), Expect = 8.050e-30
Identity = 56/88 (63.64%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 FYSVYNSMRYVNERLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDEHLVDLPRISLLFNRKNLGRLRQMIDRINSEL 264
            FYSVYNSMR++ +RL+LRLHV P++E +E+LN EF DIL SG I + + H LE+DD HL +LPR+SL+FNRK +GRLRQMID IN +L
Sbjct:  241 FYSVYNSMRFIRDRLILRLHVNPTDELLERLNDEFADILISGKIERTETHRLEVDDAHLANLPRLSLVFNRKEVGRLRQMIDVINCQL 328          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80496.18854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KBY1_9PLAN1.840e-5899.00Cytochrome D ubiquinol oxidase subunit II n=6 Tax=... [more]
A0A355GM83_9PLAN7.630e-5184.00Cytochrome D ubiquinol oxidase subunit II (Fragmen... [more]
A0A518IE72_9PLAN4.900e-4683.67Putative lysine decarboxylase n=1 Tax=Gimesia fuma... [more]
A0A517VVU3_9PLAN2.960e-4480.41Putative lysine decarboxylase n=12 Tax=Planctomyce... [more]
UPI00142215702.240e-3369.23TIGR00730 family Rossman fold protein n=1 Tax=Rubi... [more]
A0A836RHS7_9PLAN2.710e-3268.18TIGR00730 family Rossman fold protein n=1 Tax=Plan... [more]
UPI0019B9118F4.470e-3165.56TIGR00730 family Rossman fold protein n=1 Tax=Fuer... [more]
A0A517QWF4_9BACT2.230e-3065.91Putative lysine decarboxylase n=1 Tax=Planctomycet... [more]
A0A2E7D6U7_9PLAN2.690e-3068.18Cytochrome D ubiquinol oxidase subunit II n=1 Tax=... [more]
A0A3L7P2F0_9BACT8.050e-3063.64TIGR00730 family Rossman fold protein n=1 Tax=Plan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80496contigM-pyrifera_M_contig80496:2..304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score151.8
Seed ortholog evalue1.6e-34
Seed eggNOG ortholog344747.PM8797T_26625
Preferred namefas6
KEGG rclassRC00063,RC00318
KEGG koko:K06966
KEGG ReactionR00182,R00510
KEGG Pathwayko00230,ko00240,map00230,map00240
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rossmann fold nucleotide-binding protein
EggNOG OGs2IXIR@203682,COG1611@1,COG1611@2
EC3.2.2.10
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size303
Cds size282
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.6715474-UTR-M-pyrifera_M_contig80496:1..221622816710.6715474-UTR-M-pyrifera_M_contig80496:1..22Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80496 2..22 +
1692278134.1738052-UTR-M-pyrifera_M_contig80496:1..221692278134.1738052-UTR-M-pyrifera_M_contig80496:1..22Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80496 2..22 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.687342-CDS-M-pyrifera_M_contig80496:22..3041622816710.687342-CDS-M-pyrifera_M_contig80496:22..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80496 23..304 +
1692278134.191778-CDS-M-pyrifera_M_contig80496:22..3041692278134.191778-CDS-M-pyrifera_M_contig80496:22..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80496 23..304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80496.18854.1prot_M-pyrifera_M_contig80496.18854.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80496 23..304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80496.18854.1

>prot_M-pyrifera_M_contig80496.18854.1 ID=prot_M-pyrifera_M_contig80496.18854.1|Name=mRNA_M-pyrifera_M_contig80496.18854.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MRYVNERLVLRLHVEPSNEFVEQLNIEFKDILESGIITKVDAHDLEMDDE
HLVDLPRISLLFNRKNLGRLRQMIDRINSELAPAPGEEEEEEE*
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mRNA from alignment at M-pyrifera_M_contig80496:2..304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80496.18854.1 ID=mRNA_M-pyrifera_M_contig80496.18854.1|Name=mRNA_M-pyrifera_M_contig80496.18854.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig80496:2..304+ (Macrocystis pyrifera P11B4 male)
TTTTACAGCGTCTATAACAGTATGCGGTACGTCAACGAACGCCTGGTTCT GCGTCTGCACGTCGAGCCCAGCAATGAATTCGTGGAACAGCTCAACATTG AATTCAAAGACATTCTGGAATCAGGCATCATTACCAAGGTCGATGCCCAC GATCTGGAAATGGACGACGAACACCTCGTCGACCTGCCTCGCATTTCGCT GCTGTTCAACCGCAAAAACCTGGGACGTTTACGGCAGATGATTGACCGCA TCAACTCGGAACTGGCTCCCGCTCCTGGCGAAGAGGAGGAGGAAGAAGAA TAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80496:2..304+

>mRNA_M-pyrifera_M_contig80496.18854.1 ID=mRNA_M-pyrifera_M_contig80496.18854.1|Name=mRNA_M-pyrifera_M_contig80496.18854.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig80496:2..304+ (Macrocystis pyrifera P11B4 male)
ATGCGGTACGTCAACGAACGCCTGGTTCTGCGTCTGCACGTCGAGCCCAG
CAATGAATTCGTGGAACAGCTCAACATTGAATTCAAAGACATTCTGGAAT
CAGGCATCATTACCAAGGTCGATGCCCACGATCTGGAAATGGACGACGAA
CACCTCGTCGACCTGCCTCGCATTTCGCTGCTGTTCAACCGCAAAAACCT
GGGACGTTTACGGCAGATGATTGACCGCATCAACTCGGAACTGGCTCCCG
CTCCTGGCGAAGAGGAGGAGGAAGAAGAATAGATGCGGTACGTCAACGAA
CGCCTGGTTCTGCGTCTGCACGTCGAGCCCAGCAATGAATTCGTGGAACA
GCTCAACATTGAATTCAAAGACATTCTGGAATCAGGCATCATTACCAAGG
TCGATGCCCACGATCTGGAAATGGACGACGAACACCTCGTCGACCTGCCT
CGCATTTCGCTGCTGTTCAACCGCAAAAACCTGGGACGTTTACGGCAGAT
GATTGACCGCATCAACTCGGAACTGGCTCCCGCTCCTGGCGAAGAGGAGG
AGGAAGAAGAATAG
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