mRNA_M-pyrifera_M_contig80478.18847.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80478.18847.1
Unique NamemRNA_M-pyrifera_M_contig80478.18847.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig80478.18847.1 vs. uniprot
Match: A0A7S1C915_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C915_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.830e-21
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 VMSMARHNRVKEVEAALNEGLPVDAKDRYGNTLFVVACQNGLKRMAKVALRMGCDMNVQN 180
            V S+ARHNR KEVEA L+ G+PV+ +D++GNT+  +ACQNGLK+MAKVALR G D+N +N
Sbjct:   30 VFSLARHNRCKEVEALLDRGVPVNLRDKHGNTILTIACQNGLKKMAKVALRAGADINTRN 89
[Close]
BLAST of mRNA_M-pyrifera_M_contig80478.18847.1 vs. uniprot
Match: A0A7S1TRF9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRF9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.170e-18
Identity = 35/60 (58.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 VMSMARHNRVKEVEAALNEGLPVDAKDRYGNTLFVVACQNGLKRMAKVALRMGCDMNVQN 180
            + S ARHNRV+++EA L+ G+PV+ +D+YGNTL +V+CQNG KR AK+ALR G D+N +N
Sbjct:  146 IFSYARHNRVEDMEAVLDRGVPVNVRDQYGNTLLIVSCQNGHKRAAKMALRKGADINARN 205
[Close]
BLAST of mRNA_M-pyrifera_M_contig80478.18847.1 vs. uniprot
Match: A0A5A8E191_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E191_CAFRO)

HSP 1 Score: 84.0 bits (206), Expect = 6.400e-18
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 VMSMARHNRVKEVEAALNEGLPVDAKDRYGNTLFVVACQNGLKRMAKVALRMGCDMNVQN 180
            V S+ARHNRV ++ A L+ G+PVD  D +GNT+ +VACQNGLKR+AK+ALR GCD++ +N
Sbjct:  201 VFSLARHNRVADLTALLDRGVPVDIADAHGNTILIVACQNGLKRVAKLALRRGCDIDARN 260
[Close]
BLAST of mRNA_M-pyrifera_M_contig80478.18847.1 vs. uniprot
Match: A0A397A9G9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A9G9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.950e-17
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 VMSMARHNRVKEVEAALNEGLPVDAKDRYGNTLFVVACQNGLKRMAKVALRMGCDMNVQNV 183
            V S+ARHNRV +V A L+ GLPV+  D +GN+L ++ACQNGLKR+AK  LR G ++N +NV
Sbjct:   99 VFSLARHNRVDDVRAVLDRGLPVNTPDEHGNSLLIIACQNGLKRLAKELLRRGANINARNV 159
[Close]
BLAST of mRNA_M-pyrifera_M_contig80478.18847.1 vs. uniprot
Match: A0A6G0W5G2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5G2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.160e-17
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 VMSMARHNRVKEVEAALNEGLPVDAKDRYGNTLFVVACQNGLKRMAKVALRMGCDMNVQN 180
            V S+ARHNRV+EV+ AL+ GLPV+  D YGN+L ++ACQNGLKR+AK  LR G ++N +N
Sbjct:  101 VFSLARHNRVEEVKTALDNGLPVNIVDAYGNSLLIIACQNGLKRLAKELLRRGANINARN 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig80478.18847.1 vs. uniprot
Match: A0A7S3YZP2_9EUKA (Hypothetical protein n=4 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YZP2_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 1.700e-16
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:   13 ARHNRVKEVEAALNEGLPVDAKDRYGNTLFVVACQNGLKRMAKVALRMGCDMNVQNV 183
            ARH + KEVEA L +GLPVD +D++GNTL++ ACQNG KR+AKVALR G ++N +NV
Sbjct:  128 ARHCKKKEVEAILRQGLPVDTEDKHGNTLYLTACQNGHKRIAKVALRAGANINHKNV 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig80478.18847.1 vs. uniprot
Match: A0A3R6WYK7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WYK7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.970e-16
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 VMSMARHNRVKEVEAALNEGLPVDAKDRYGNTLFVVACQNGLKRMAKVALRMGCDMNVQN 180
            V S+ARHNRV +V A L+ GLPV+  D +GN+L ++ACQNGLKR+AK  LR G ++N +N
Sbjct:   99 VFSLARHNRVDDVRAVLDRGLPVNTPDEHGNSLLIIACQNGLKRLAKELLRRGANINARN 158
[Close]
BLAST of mRNA_M-pyrifera_M_contig80478.18847.1 vs. uniprot
Match: A0A067BTV0_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BTV0_SAPPC)

HSP 1 Score: 77.8 bits (190), Expect = 2.040e-16
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 VMSMARHNRVKEVEAALNEGLPVDAKDRYGNTLFVVACQNGLKRMAKVALRMGCDMNVQNV 183
            V S+ RHNR ++V+A L +GLPV+ +D  GN+L V+ACQNGLKR+AK+ LR G ++N+QN+
Sbjct:   73 VFSLTRHNRFEQVDAMLAKGLPVNLQDANGNSLLVIACQNGLKRLAKMLLRRGANINLQNM 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig80478.18847.1 vs. uniprot
Match: A0A485KLK5_9STRA (Aste57867_8880 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLK5_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.470e-16
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 VMSMARHNRVKEVEAALNEGLPVDAKDRYGNTLFVVACQNGLKRMAKVALRMGCDMNVQN 180
            V S+ARHNRV +V   L+ GLPV+ +D YGN+L ++ACQNGLKR+AK  LR G ++N QN
Sbjct:  142 VFSLARHNRVDDVRDMLDSGLPVNIQDAYGNSLLLIACQNGLKRLAKELLRRGANINAQN 201
[Close]
BLAST of mRNA_M-pyrifera_M_contig80478.18847.1 vs. uniprot
Match: A0A3R6V4T2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6V4T2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.970e-16
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 VMSMARHNRVKEVEAALNEGLPVDAKDRYGNTLFVVACQNGLKRMAKVALRMGCDMNVQNV 183
            V S+ RHNRV +V+  L+ GLPVD  D  GNTL ++ACQNGLKR+ K  LR G ++N  NV
Sbjct:   88 VFSLVRHNRVDDVKTVLDNGLPVDITDENGNTLLIIACQNGLKRLTKELLRRGANINACNV 148
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80478.18847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C915_9STRA8.830e-2163.33Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1TRF9_9STRA6.170e-1858.33Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5A8E191_CAFRO6.400e-1860.00Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A397A9G9_9STRA1.950e-1757.38Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0W5G2_9STRA9.160e-1760.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3YZP2_9EUKA1.700e-1663.16Hypothetical protein n=4 Tax=Lotharella globosa Ta... [more]
A0A3R6WYK7_9STRA1.970e-1656.67Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A067BTV0_SAPPC2.040e-1655.74Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A485KLK5_9STRA3.470e-1658.33Aste57867_8880 protein n=1 Tax=Aphanomyces stellat... [more]
A0A3R6V4T2_9STRA5.970e-1655.74Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80478contigM-pyrifera_M_contig80478:722..904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog65071.PYU1_T003450
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ankyrin repeats (many copies)
EggNOG OGs1MEI5@121069,COG4281@1,KOG0817@2759
COG Functional cat.I
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size183
Cds size180
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.4025662-UTR-M-pyrifera_M_contig80478:721..7241622816710.4025662-UTR-M-pyrifera_M_contig80478:721..724Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80478 722..724 +
1692278134.026085-UTR-M-pyrifera_M_contig80478:721..7241692278134.026085-UTR-M-pyrifera_M_contig80478:721..724Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80478 722..724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.419935-CDS-M-pyrifera_M_contig80478:724..9041622816710.419935-CDS-M-pyrifera_M_contig80478:724..904Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80478 725..904 +
1692278134.0395367-CDS-M-pyrifera_M_contig80478:724..9041692278134.0395367-CDS-M-pyrifera_M_contig80478:724..904Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80478 725..904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80478.18847.1prot_M-pyrifera_M_contig80478.18847.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80478 725..904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80478.18847.1

>prot_M-pyrifera_M_contig80478.18847.1 ID=prot_M-pyrifera_M_contig80478.18847.1|Name=mRNA_M-pyrifera_M_contig80478.18847.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MSMARHNRVKEVEAALNEGLPVDAKDRYGNTLFVVACQNGLKRMAKVALR
MGCDMNVQNV
back to top

mRNA from alignment at M-pyrifera_M_contig80478:722..904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80478.18847.1 ID=mRNA_M-pyrifera_M_contig80478.18847.1|Name=mRNA_M-pyrifera_M_contig80478.18847.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig80478:722..904+ (Macrocystis pyrifera P11B4 male)
GTGATGAGCATGGCGAGACATAATCGGGTGAAGGAGGTGGAGGCGGCACT
GAACGAGGGTCTGCCTGTGGACGCCAAGGACCGGTACGGCAACACGTTGT
TTGTGGTGGCGTGCCAGAACGGGCTGAAGAGGATGGCCAAGGTGGCGCTG
AGGATGGGCTGTGACATGAACGTGCAGAACGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig80478:722..904+

>mRNA_M-pyrifera_M_contig80478.18847.1 ID=mRNA_M-pyrifera_M_contig80478.18847.1|Name=mRNA_M-pyrifera_M_contig80478.18847.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig80478:722..904+ (Macrocystis pyrifera P11B4 male)
ATGAGCATGGCGAGACATAATCGGGTGAAGGAGGTGGAGGCGGCACTGAA
CGAGGGTCTGCCTGTGGACGCCAAGGACCGGTACGGCAACACGTTGTTTG
TGGTGGCGTGCCAGAACGGGCTGAAGAGGATGGCCAAGGTGGCGCTGAGG
ATGGGCTGTGACATGAACGTGCAGAACGTGATGAGCATGGCGAGACATAA
TCGGGTGAAGGAGGTGGAGGCGGCACTGAACGAGGGTCTGCCTGTGGACG
CCAAGGACCGGTACGGCAACACGTTGTTTGTGGTGGCGTGCCAGAACGGG
CTGAAGAGGATGGCCAAGGTGGCGCTGAGGATGGGCTGTGACATGAACGT
GCAGAACGTG
back to top