mRNA_M-pyrifera_M_contig80476.18845.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80476.18845.1
Unique NamemRNA_M-pyrifera_M_contig80476.18845.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80476.18845.1 vs. uniprot
Match: E0MS97_9HYPH (MscS mechanosensitive ion channel n=2 Tax=Ahrensia sp. R2A130 TaxID=744979 RepID=E0MS97_9HYPH)

HSP 1 Score: 207 bits (527), Expect = 1.670e-57
Identity = 131/344 (38.08%), Postives = 182/344 (52.91%), Query Frame = 1
Query:    1 FFVMAMAVAFALDTGHEPSRRIIFEIVVAYLFYRLMIRAVSWNLFAYDAPSHRIVNLSDDEANRLHRDWGIAVAVVVIFAAGARSLSFIGQEQGYAGLTVENIL------FIQICTACLATLVLAILDLKNWKIWQHIFEPRAKSAWLYRLRATLARSVPVVFLVYMLIALGVFIYRLALGLTDPGAVIAAPFVVFWAALMTYGLVIIGIQALYNRRIRYFEERAAAEQER------LAKEAGTVDIDS-----------GEEMVVGPSSA--------NFEYQPVFKPFFEMAALAIIATIAVGELIRSWGVDLNSDGNFWSSLLDIILASVLCWLAYRAVSL 939
            F V+A  +A  L  G   +R +  EI++AY  YR++   VSWNL AYDAP HR+VNLSD+EA R+H  W + VA+V++  A  R    IG   G        +L       + I  A  A  +L ++ + NW+   H+  P +     Y+ R  LAR VP   ++Y + A  +F +R+A    + GA I  PFVV +AAL+  G+ ++ IQ LY RR + F ER A E ER      +A  A   D D            GEEM+V  + A         FEYQP+ +   E +  AI+   A+GEL R WG+D+ +  N+W+S LDIIL S L W AYRAV L
Sbjct:  147 FVVIAGIIAILLHNGDPRTRIVTVEIIIAYAIYRMLRYGVSWNLLAYDAPKHRLVNLSDEEAKRMHLHWWVMVALVLVATAITRFFVLIGFNSGNGEFNGNGLLSLGEAQLLYIFNAGFAVSMLILITVINWRALSHVVAPSSAGMAFYKARTNLARLVPPFIVIYAIAAFVMFTWRVASLQPNAGAFIIGPFVVSYAALIAQGVALLVIQLLYQRREQKFYERQAMELERQREQAAIAAAAMRADYDGEEEDDVIPPQEGEEMLVAEAGAPPAEEAEVQFEYQPLLRGLIERSVGAIVIVFALGELGRIWGIDVMAQNNWWASFLDIILVSALGWFAYRAVGL 490          
BLAST of mRNA_M-pyrifera_M_contig80476.18845.1 vs. uniprot
Match: A0A7R7CDT0_9HYPH (Uncharacterized protein n=2 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A7R7CDT0_9HYPH)

HSP 1 Score: 149 bits (377), Expect = 1.040e-36
Identity = 115/339 (33.92%), Postives = 166/339 (48.97%), Query Frame = 1
Query:    4 FVMAMAVAFALDTGHEPSRRIIFEIVVAYLFYRLMIRAVSWNLFAYDAPSHRIVNLSDDEANRLHRDWGIAVAVVVIFAAGARSLSFIG-QEQGYAGLTVENILFIQICTACLATLVLAILDLKNWKIWQHIF----EPRAKSAWLYRLRATLARSVPVVFLVYMLIALGVFIYRLALGLTDPGAVIAAPFVVFWAALMTYGLVIIGIQALYNRRIRYFEERAAAE--------------QERLAK--EAGTVDIDSGEEMVV------GPSSANFEYQPVFKPFFEMAALAIIATIAVGELIRSWGVDLNS-DGNFWSSLLDIILASVLCWLAYRAVS 936
            FV+AM VA   DTGH P+R+  F I+  +  YR+M   + WN FA D P+HR++N+ DD A RLHRDW   +AV  +  A  R    +G  ++ Y       + FI     C   ++ AI  + + K    I     +P AK AW    +   ARS  +V L Y  IA  +   RL LGL     ++AAP +VF  A+  YG+ I+ +  +Y R    F  R A E              +ERLA+  E     ++ GEE+ V       P++   ++ PVFK FFE    A +   ++  L R WG++L   DGN   + LDI+L   +   AY AV+
Sbjct:  198 FVVAMGVALIFDTGHAPTRKTTFLIISTFAIYRIMRSVILWNFFAPDTPAHRLINVDDDAARRLHRDWSAVLAVAAVIIAFCRWAQLMGVSDETY------RLSFIVAMLVC--AVMFAISAIAHRKELHSILLGKGDPAAKPAW----QRFFARSALLVVLGYFGIAWFMSSLRLILGLPGGYILVAAPLLVFIVAIFAYGVAILILDNIYERLELSFYRRLAREDAAERNARRRDEQAKERLAQLSEHERDILEEGEEITVYKPELLAPTNRPRKFVPVFKSFFENVIFAAVVIFSIAILARLWGIELERVDGNPLVAALDILLVLFIAGSAYNAVN 524          
BLAST of mRNA_M-pyrifera_M_contig80476.18845.1 vs. uniprot
Match: A0A5B8L689_9HYPH (Mechanosensitive ion channel family protein n=2 Tax=Nitratireductor sp. SY7 TaxID=2599600 RepID=A0A5B8L689_9HYPH)

HSP 1 Score: 148 bits (374), Expect = 2.140e-36
Identity = 122/345 (35.36%), Postives = 169/345 (48.99%), Query Frame = 1
Query:    4 FVMAMAVAFALDTGHEPSRRIIFEIVVAYLFYRLMIRAVSWNLFAYDAPSHRIVNLSDDEANRLHRDWGIAVAVVVIFAAGARSLSFIGQEQGYAGLTVENI----------LFIQICTACLATLVLAILDLKNWK-IWQHIFEPRAKSAWLYRLRATLARSVPVVFLVYMLIALGVFIYRLALGLTDPGAVIAAPFVVFWAALMTYGLVIIGIQALYNRRIRYFEERAAA--EQER---------------LAKEAGTVDIDSGEEM-----VVGPSSANFEYQPVFKPFFEMAALAIIATIAVGELIRSWGVDLNSDGNF-WSSLLDIILASVLCWLAYRAVS 936
            FV A+ VA   D+GHEPSR  IF IV  Y+ YR++   V WN FA  + +HR+VNLSD +A  L R W  A+AV  I     R +  +G     AG  +  I          + + +C A LA  +LAI+  +  K I     E + K  WL  +  T   ++P++ L+Y+ +A  V   RL LGL      + AP +VF  A+  Y +    I+ +Y RR    E R  A  E ER               L++E   V ++ G EM     V  P S    Y P FK FFE    A I  ++ GEL R WGVD+  DG    +S LDI+L +++   AYRAV+
Sbjct:  111 FVTAILVAVIFDSGHEPSRATIFVIVSTYVVYRILRGVVFWNFFAPTSSAHRLVNLSDAQAQSLFRHWAAALAVGAIIIGLCRWVQILGANGAEAGTAMAQINDDAHRLAFIVGLFVCAALLA--LLAIIHRRELKAIILGPGEVKEKPGWLRTIAFT---ALPLI-LLYLALAWFVSSVRLTLGLPGGYIPVLAPIIVFVVAIFAYAVAAYLIEVIYERRAAAHERRELARLEAERRAWERTQASREMMSELSEETQEV-LEEGAEMTMMHSVSAPDSQIRPYFPAFKRFFENCVAATILVVSAGELSRLWGVDIGRDGGHPLASALDILLVAIIAASAYRAVN 448          
BLAST of mRNA_M-pyrifera_M_contig80476.18845.1 vs. uniprot
Match: A0A1L3SW27_9HYPH (Uncharacterized protein n=2 Tax=Aquibium oceanicum TaxID=1670800 RepID=A0A1L3SW27_9HYPH)

HSP 1 Score: 144 bits (362), Expect = 1.060e-34
Identity = 114/341 (33.43%), Postives = 169/341 (49.56%), Query Frame = 1
Query:    4 FVMAMAVAFALDTGHEPSRRIIFEIVVAYLFYRLMIRAVSWNLFAYDAPSHRIVNLSDDEANRLHRDWGIAVAVVVIFAAGARSLSFIGQEQGYAGLTV-------ENILFIQICTACLATLVLAILDLKNWKIWQHIFEPRAKSAWLYRLR-ATLARSVPVVFLVYMLIALGVFIYRLALGLTDPGAVIAAPFVVFWAALMTYGLVIIGIQALYNRRI--------------RYFEERAAAEQERLAKEAGTVD--IDSGEEMVV-----GPSSANFEYQPVFKPFFEMAALAIIATIAVGELIRSWGVDLNSDGNFW-SSLLDIILASVLCWLAYRAVS 936
            FV A+ VA   DTGHEPSR  IF I+  Y+ YR++   + WN FA  A +HR++NLSD+ A RL RDW I +AV        R +  +   +G  G+++       +N+ FI     C   L++A + L++ K    I   R ++     LR AT+  ++P   L+Y++ A  V   RL LG       + AP +VF A +  Y +    ++ LY RR               R    RA A +E +A+    V   ++ G+EM V      P++    Y P FK FF+ +  A I  +  GEL R WG DL  +G  W +S LDI+L  ++    YRAV+
Sbjct:  188 FVTAVLVAVIFDTGHEPSRTTIFVIISTYVAYRILRTVIFWNFFAPGASAHRLINLSDEAAERLFRDWAIILAVGATIIGLCRWILVLPPPEGVVGMSMVAVNHDAQNMAFILGMLIC--ALMMAGMALRHNKELNEIVLGRDETTRKSPLRRATVFLALPAT-LIYLVFAWLVSSVRLTLGHPGGYVPVLAPILVFVAGVFAYAVAAYLLEILYERRAASHRRRQLLKLQAERRAWRRAEASKEMMAEMNEDVREMLEDGDEMTVMAPVSRPTTTIQPYFPAFKEFFQNSIQATILVVCCGELARLWGADLGREGGHWFASSLDILLVIIVAASLYRAVN 525          
BLAST of mRNA_M-pyrifera_M_contig80476.18845.1 vs. uniprot
Match: A0A8J5ACY0_9CHEL (Small-conductance mechanosensitive channel n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5ACY0_9CHEL)

HSP 1 Score: 136 bits (342), Expect = 3.360e-32
Identity = 105/332 (31.63%), Postives = 161/332 (48.49%), Query Frame = 1
Query:   10 MAMAVAFALDTGHEPSRRIIFEIVVAYLFYRLMIRAVSWNLFAYDAPSHRIVNLSDDEANRLHRDWGIAVAVVVIFAAGARSLSFIGQEQGYAGLTVENILFIQICTACLATLVLAIL------DLKNWKIWQHIFEPRAKSAWLYRLRATLARSVPVVFLVYMLIALGVFIYRLALGLTDPGAVIAAPFVVFWAALMTYGLVIIGIQALYNRRIRYFEERAAA---------EQERLAKEAGTV---DIDSGEEMVVGP--SSANFEYQPVFKPFF----EMAALAIIATIAVGELIRSWGVDLNSDGNFWSSLLDIILASVLCWLAYRAV 933
            +A+ VA   D+ H PSR  I  I+ AY+ Y++    + +NL A DAPSHR++NL D+ A+R+ + W      VV+ ++    L+FIG       L V   LF       L+ L+  IL      D+KN  + +   EP  K  W    R  LA    V+ + Y+ IA  +  YR+ L L D  ++I +P      A+  Y +++I I   Y  R + FEER +          E+E+ A EA      D D  EE+++    ++   E  PVFKP F    E AA  +I   A G ++ +W V++   GN  +  +D ++   + W  YRAV
Sbjct:  165 VALIVALVFDSEHSPSRVTIAVIIGAYIAYKIFRHVILFNLIAPDAPSHRMINLDDEAADRMQKQWRRVALTVVLLSSFFVWLAFIGLRGDTLKLVVITCLF-------LSALMFGILAFRDRADIKNIILGKG--EPSNKPIW----RRILASQAFVMLIAYLAIAWVISAYRILLNLPDSLSIIGSPITALILAVTAYSVILIVIDRFYVARQKRFEERVSLAHEQAKQKHEEEKAAIEAAMASDADSDDDEELIINRMMNANELEAMPVFKPIFKSLMETAAGIMITIFAFGFILSNWDVNIGQTGNPITEFMDTLIIIFVAWFMYRAV 483          
BLAST of mRNA_M-pyrifera_M_contig80476.18845.1 vs. uniprot
Match: A0A0M6ZP80_9HYPH (Putative MscS family protein YfkC n=1 Tax=Roseibium album TaxID=311410 RepID=A0A0M6ZP80_9HYPH)

HSP 1 Score: 82.8 bits (203), Expect = 7.690e-14
Identity = 83/324 (25.62%), Postives = 155/324 (47.84%), Query Frame = 1
Query:    1 FFVMAMAVAFALDTGHEPSRR---IIFEIVVAYLFYRLMIRAVSWNLFAYDAPSHRIVNLSDDEANRLHRDWGIAVAVVVIFAAGARSLSFIGQEQGYAGLTVENILFIQICTACLATLVLAILDLKNWKIWQHIFEPRAKS---AWLYRLRATLARSVPVVFLVYMLIALGVFIYRLALGLTDPGAVIAAPFVVFWAALMTYGLVIIGIQALYNRRIRYFEERAA-AEQERLAKEA--GTVDIDSGEEMVVGPSSANFEYQPVFKPFFEMAALAIIATIAVGELIRSWGVDLNSDGNFWSSLLDIILASVLCWLAYRAVSLLI 945
            FF +A+ V   + TG + + +   +IF ++ A+L +R+    +  NL A DA SHR++NLS +EA  L+R   +A + V +F+ G      +  E+   GL+++      I  + L+ ++L  + +   K    +    A+S    W    R  LA     + ++Y  IA G+   R+ L L D   ++ AP  V   A + YG++I+ I  +   R+   + ++  AE  + ++E+  G  D +S        ++     +  F+  F+  A  I+   ++  L   WGV L    +   S ++++L   L ++AY AV ++I
Sbjct:  200 FFAVAVVVYLTVGTGLQAANQTALVIFSVIAAFLVFRI----IFLNLLAPDADSHRLINLSSEEAGSLYRAL-LAGSAVSLFSVGF----CLWMER--LGLSLDAHKIALIGASALSMIILIGISVAYRKTIAGLIRGEAESDPPIW----RKVLANVWHFIAIIYFAIAWGISAVRILLDLPDATGLVGAPLQVMLLAAIVYGILILIIDKVLLPRLDTADAQSKIAEDIKRSEESEGGKEDPESAMAQARAEAADREALRSPFRDLFDRGAAIIVLFGSLDLLASMWGVPLAGSSSLIGSFVEVLLVMFLGYMAYEAVKIVI 508          
BLAST of mRNA_M-pyrifera_M_contig80476.18845.1 vs. uniprot
Match: UPI0012BC456F (mechanosensitive ion channel family protein n=1 Tax=Roseibium denhamense TaxID=76305 RepID=UPI0012BC456F)

HSP 1 Score: 79.7 bits (195), Expect = 8.170e-13
Identity = 81/330 (24.55%), Postives = 148/330 (44.85%), Query Frame = 1
Query:    1 FFVMAMAVAFALDTGHEPSRR---IIFEIVVAYLFYRLMIRAVSW-NLFAYDAPSHRIVNLSDDEANRLHRDWGIAVAVVVIFAAGARSLSFIGQEQ-----GYAGLTVENILFIQICTACLATLVLAIL---DLKNWKIWQHIFEPRAKSAWLYRLRATLARSVPVVFLVYMLIALGVFIYRLALGLTDPGAVIAAPFVVFWAALMTYGLVIIGIQALYNRRIRYFEERA--AAEQERLAKEAGTV-DIDSGEEMVVGPSSANFEYQPVFKPFFEMAALAIIATIAVGELIRSWGVDLNSDGNFWSSLLDIILASVLCWLAYRAVSLLI 945
            FF+    V  A+ +G E +     ++  ++ A+L  R++     W NL A DA SHR+V LS++EA+ L+R      AV +   A    +  +G  Q        G +  +++ + +      T +  ++   +L+   +W+ +      + W +            + ++Y ++A  +   R+ L + D   ++AAP  V   A + YGL+I+ I  L   R+   + +A  A + ER     G V D DS        ++   E +  F+   +  A  ++   A+  L   WGV L   G+   S +++IL   L ++AY AV +LI
Sbjct:  197 FFITGAVVYLAIGSGLEAANETAMVVLGMIAAFLTLRII-----WLNLLAPDAESHRLVELSNEEASGLYRSLLAGGAVSLTAFAFCLLMERLGLPQDVHKVALIGASALSMVILSVIAVVYRTTIARLIRGRELETAPLWRRVLA----NVWHF------------IAIIYFVVAWSISSIRILLDMPDATGLVAAPLEVLLLAAVVYGLLILLIDKLLLPRLDTPKAQAQIAEDIERAEDSEGEVQDRDSLLSQARAEAAEREEQRSPFRQLLDRGAAIVVGFGAIDLLANWWGVPLAGSGSLIGSFIEVILVVFLGYMAYEAVKILI 505          
BLAST of mRNA_M-pyrifera_M_contig80476.18845.1 vs. uniprot
Match: UPI00187B89AC (mechanosensitive ion channel family protein n=1 Tax=Sneathiella sp. P13V-1 TaxID=2697366 RepID=UPI00187B89AC)

HSP 1 Score: 77.4 bits (189), Expect = 4.580e-12
Identity = 78/314 (24.84%), Postives = 141/314 (44.90%), Query Frame = 1
Query:    4 FVMAMAVAFALDTGHEPSRRIIFEIVVAYLFYRLMIRAVSWNLFAYDAPSHRIVNLSDDEANRLHRDWGIAVAVVVIFAAGARSLSF-IGQEQGYAGLTVENILFIQICTACLATLVLAILDLKNWKIW-QHIFEPRAKSAWLYRLRATLARSVPVVFLVYMLIALGVFIYRLALGLTDPGAVIAAPFVVFWAALMTYGLVIIGIQALYNRRIRYFEERAAAEQERLAKEAGTVDIDSGEEMVVGPSSANFEYQPVFKPFFEMAALAIIATIAVGELIRSWGVDLNSDGNFWSSLLDIILASVLCWLAYRAVSL 939
            FV+      AL TGH      +  ++V ++    +   +   L A DAP+HR+++LSD +A +   +        VI+A    S +  +     + GL+ +  L   I    +  +V  +  + + +I  Q I  P AK+   +  R  LA S  ++F  Y+++A  V + RL L L     ++ AP ++   ++  YG+ ++ I  +      Y ++  A   E      GT DI   E+           +Q       E A   ++A +A+G L+ +WG+D++S  +    L DI +   + ++ YRAV L
Sbjct:  125 FVVISITLIALFTGHAKPDAPVQSVLVLFVAVLRVPFIILDALIAPDAPAHRLIHLSDQQALKFRNN--------VIYAHAPTSFAISVCLMMDHVGLSKDIHLLFLIAAVTIGAVVWTLFAIFHRQIIAQMILGPHAKTENKHGFRQVLAASWHILFAFYIILAWAVTVARLLLDLPSAYHLLVAPMMILLFSIGGYGIALLVIDKVAINFGNYRQKVLANSDEDFG---GTEDIQLYEKA----------WQSDLVKLAEKAVAFLVAILAIGALLETWGIDVSSSDSLVVRLGDIFIVCFVSYVIYRAVKL 417          
BLAST of mRNA_M-pyrifera_M_contig80476.18845.1 vs. uniprot
Match: A0A222F5D2_9HYPH (Mechanosensitive ion channel protein n=1 Tax=Labrenzia sp. VG12 TaxID=2021862 RepID=A0A222F5D2_9HYPH)

HSP 1 Score: 71.2 bits (173), Expect = 5.290e-10
Identity = 76/328 (23.17%), Postives = 139/328 (42.38%), Query Frame = 1
Query:    1 FFVMAMAVAFALDTGHEPSRR---IIFEIVVAYLFYRLMIRAVSW-NLFAYDAPSHRIVNLSDDEANRLHRDWGIAVAVVVIFAAGARSLSFIGQEQG------YAGLTVENILFIQICTACLATLVLAILDLKNWKIWQHIFEPRAKSAWLYRLRATLARSVPVVFLVYMLIALGVFIYRLALGLTDPGAVIAAPFVVFWAALMTYGLVIIGIQALYNRRIRYFEERA--AAEQERLAKEAGTVDIDSGEEMVVGPSSANFE-YQPVFKPFFEMAALAIIATIAVGELIRSWGVDLNSDGNFWSSLLDIILASVLCWLAYRAVSLLI 945
            FF +++ V   + +G E +     ++F +V  ++  R++     W NL   DA SHR++ L++ EAN L++   I   V +   A    +  +G  +            +  I+   I  A    +   I    +  +W+ +       +W Y            + + Y +IA G+   R+ L L D   ++ AP  V   A + YGL+I+ I  +   R+   + +A  A + +R  +  G+              +A  E  +  F+  F+  A  I+   AV  L   WGV L   G+   S ++++L   L ++AY AV ++I
Sbjct:  199 FFAVSVLVFLLIGSGLEAANETAMVVFGVVAVFMALRII-----WLNLLVPDAESHRLIALTNSEANGLYKSLLIGAGVSLFAVAFCLWMERLGLNEDAHKVALIGASALSMIILTGIAFAYRKAIARLIRGEGDVPVWRRVIA----GSWHY------------IAIFYFVIAWGISAVRILLDLPDATGLVGAPLQVILLAAIVYGLLILIIDRVLLPRLDTADAQAKIAEDIQRAEENEGSEQXXXXXXXXXXXXAAEREAMRSPFRDLFDRGAAIIVVFGAVDILANQWGVPLAGSGSLIGSFIEVLLVVFLGYMAYEAVKIVI 505          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80476.18845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
E0MS97_9HYPH1.670e-5738.08MscS mechanosensitive ion channel n=2 Tax=Ahrensia... [more]
A0A7R7CDT0_9HYPH1.040e-3633.92Uncharacterized protein n=2 Tax=unclassified Mesor... [more]
A0A5B8L689_9HYPH2.140e-3635.36Mechanosensitive ion channel family protein n=2 Ta... [more]
A0A1L3SW27_9HYPH1.060e-3433.43Uncharacterized protein n=2 Tax=Aquibium oceanicum... [more]
A0A8J5ACY0_9CHEL3.360e-3231.63Small-conductance mechanosensitive channel n=1 Tax... [more]
A0A0M6ZP80_9HYPH7.690e-1425.62Putative MscS family protein YfkC n=1 Tax=Roseibiu... [more]
UPI0012BC456F8.170e-1324.55mechanosensitive ion channel family protein n=1 Ta... [more]
UPI00187B89AC4.580e-1224.84mechanosensitive ion channel family protein n=1 Ta... [more]
A0A222F5D2_9HYPH5.290e-1023.17Mechanosensitive ion channel protein n=1 Tax=Labre... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80476contigM-pyrifera_M_contig80476:2..946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score204.9
Seed ortholog evalue5.4e-50
Seed eggNOG ortholog744979.R2A130_1832
KEGG koko:K03442,ko:K22044
KEGG TC1.A.23.2,1.A.23.3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mechanosensitive ion channel
EggNOG OGs1MY0I@1224,2TSIN@28211,COG0668@1,COG0668@2
COG Functional cat.M
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size945
Cds size936
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.3305733-UTR-M-pyrifera_M_contig80476:1..101622816710.3305733-UTR-M-pyrifera_M_contig80476:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80476 2..10 +
1692278133.9732754-UTR-M-pyrifera_M_contig80476:1..101692278133.9732754-UTR-M-pyrifera_M_contig80476:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80476 2..10 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.3417222-CDS-M-pyrifera_M_contig80476:10..9461622816710.3417222-CDS-M-pyrifera_M_contig80476:10..946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80476 11..946 +
1692278133.9859436-CDS-M-pyrifera_M_contig80476:10..9461692278133.9859436-CDS-M-pyrifera_M_contig80476:10..946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80476 11..946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80476.18845.1prot_M-pyrifera_M_contig80476.18845.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80476 11..946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80476.18845.1

>prot_M-pyrifera_M_contig80476.18845.1 ID=prot_M-pyrifera_M_contig80476.18845.1|Name=mRNA_M-pyrifera_M_contig80476.18845.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=312bp
MAMAVAFALDTGHEPSRRIIFEIVVAYLFYRLMIRAVSWNLFAYDAPSHR
IVNLSDDEANRLHRDWGIAVAVVVIFAAGARSLSFIGQEQGYAGLTVENI
LFIQICTACLATLVLAILDLKNWKIWQHIFEPRAKSAWLYRLRATLARSV
PVVFLVYMLIALGVFIYRLALGLTDPGAVIAAPFVVFWAALMTYGLVIIG
IQALYNRRIRYFEERAAAEQERLAKEAGTVDIDSGEEMVVGPSSANFEYQ
PVFKPFFEMAALAIIATIAVGELIRSWGVDLNSDGNFWSSLLDIILASVL
CWLAYRAVSLLI
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mRNA from alignment at M-pyrifera_M_contig80476:2..946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80476.18845.1 ID=mRNA_M-pyrifera_M_contig80476.18845.1|Name=mRNA_M-pyrifera_M_contig80476.18845.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=945bp|location=Sequence derived from alignment at M-pyrifera_M_contig80476:2..946+ (Macrocystis pyrifera P11B4 male)
TTCTTTGTCATGGCCATGGCCGTGGCATTCGCGCTGGACACCGGTCACGA ACCGTCAAGGCGGATCATTTTTGAAATCGTGGTTGCCTACCTGTTTTACC GGTTGATGATCAGGGCAGTGTCGTGGAACCTCTTTGCCTATGATGCGCCG AGCCACCGCATCGTCAATCTGAGCGATGACGAGGCCAACCGGCTCCACCG GGACTGGGGCATCGCGGTTGCCGTGGTGGTGATCTTCGCCGCCGGCGCAC GGTCCCTGAGTTTCATTGGGCAGGAACAGGGCTATGCTGGCCTGACAGTC GAGAACATTCTGTTCATCCAGATTTGCACCGCGTGCCTTGCGACATTGGT CCTGGCAATTCTCGACCTCAAGAACTGGAAGATTTGGCAGCACATCTTCG AGCCCCGAGCCAAGAGCGCCTGGCTTTACCGTTTGCGCGCGACACTGGCG CGTTCGGTGCCGGTGGTGTTCCTAGTCTACATGTTGATCGCACTGGGTGT CTTCATTTACCGGCTGGCCCTTGGCCTTACAGACCCAGGCGCGGTCATTG CTGCACCATTTGTCGTCTTCTGGGCGGCCCTGATGACCTATGGTCTGGTG ATCATCGGCATTCAGGCGCTGTACAACCGGCGCATCCGGTATTTTGAGGA GCGTGCGGCCGCCGAACAGGAACGACTGGCAAAGGAAGCCGGAACGGTGG ACATCGATTCCGGAGAAGAAATGGTCGTTGGTCCGTCAAGCGCCAATTTC GAGTATCAGCCGGTTTTCAAGCCGTTCTTCGAAATGGCGGCATTGGCGAT CATCGCGACCATTGCCGTTGGCGAATTGATCCGCAGCTGGGGCGTGGATC TGAACAGCGACGGCAATTTCTGGTCGTCGCTGCTCGACATCATTCTGGCG TCCGTCTTGTGCTGGCTGGCCTATCGTGCCGTTTCCCTGCTCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80476:2..946+

>mRNA_M-pyrifera_M_contig80476.18845.1 ID=mRNA_M-pyrifera_M_contig80476.18845.1|Name=mRNA_M-pyrifera_M_contig80476.18845.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1872bp|location=Sequence derived from alignment at M-pyrifera_M_contig80476:2..946+ (Macrocystis pyrifera P11B4 male)
ATGGCCATGGCCGTGGCATTCGCGCTGGACACCGGTCACGAACCGTCAAG
GCGGATCATTTTTGAAATCGTGGTTGCCTACCTGTTTTACCGGTTGATGA
TCAGGGCAGTGTCGTGGAACCTCTTTGCCTATGATGCGCCGAGCCACCGC
ATCGTCAATCTGAGCGATGACGAGGCCAACCGGCTCCACCGGGACTGGGG
CATCGCGGTTGCCGTGGTGGTGATCTTCGCCGCCGGCGCACGGTCCCTGA
GTTTCATTGGGCAGGAACAGGGCTATGCTGGCCTGACAGTCGAGAACATT
CTGTTCATCCAGATTTGCACCGCGTGCCTTGCGACATTGGTCCTGGCAAT
TCTCGACCTCAAGAACTGGAAGATTTGGCAGCACATCTTCGAGCCCCGAG
CCAAGAGCGCCTGGCTTTACCGTTTGCGCGCGACACTGGCGCGTTCGGTG
CCGGTGGTGTTCCTAGTCTACATGTTGATCGCACTGGGTGTCTTCATTTA
CCGGCTGGCCCTTGGCCTTACAGACCCAGGCGCGGTCATTGCTGCACCAT
TTGTCGTCTTCTGGGCGGCCCTGATGACCTATGGTCTGGTGATCATCGGC
ATTCAGGCGCTGTACAACCGGCGCATCCGGTATTTTGAGGAGCGTGCGGC
CGCCGAACAGGAACGACTGGCAAAGGAAGCCGGAACGGTGGACATCGATT
CCGGAGAAGAAATGGTCGTTGGTCCGTCAAGCGCCAATTTCGAGTATCAG
CCGGTTTTCAAGCCGTTCTTCGAAATGGCGGCATTGGCGATCATCGCGAC
CATTGCCGTTGGCGAATTGATCCGCAGCTGGGGCGTGGATCTGAACAGCG
ACGGCAATTTCTGGTCGTCGCTGCTCGACATCATTCTGGCGTCCGTCTTG
TGCTGGCTGGCCTATCGTGCCGTTTCCCTGCTCATCATGGCCATGGCCGT
GGCATTCGCGCTGGACACCGGTCACGAACCGTCAAGGCGGATCATTTTTG
AAATCGTGGTTGCCTACCTGTTTTACCGGTTGATGATCAGGGCAGTGTCG
TGGAACCTCTTTGCCTATGATGCGCCGAGCCACCGCATCGTCAATCTGAG
CGATGACGAGGCCAACCGGCTCCACCGGGACTGGGGCATCGCGGTTGCCG
TGGTGGTGATCTTCGCCGCCGGCGCACGGTCCCTGAGTTTCATTGGGCAG
GAACAGGGCTATGCTGGCCTGACAGTCGAGAACATTCTGTTCATCCAGAT
TTGCACCGCGTGCCTTGCGACATTGGTCCTGGCAATTCTCGACCTCAAGA
ACTGGAAGATTTGGCAGCACATCTTCGAGCCCCGAGCCAAGAGCGCCTGG
CTTTACCGTTTGCGCGCGACACTGGCGCGTTCGGTGCCGGTGGTGTTCCT
AGTCTACATGTTGATCGCACTGGGTGTCTTCATTTACCGGCTGGCCCTTG
GCCTTACAGACCCAGGCGCGGTCATTGCTGCACCATTTGTCGTCTTCTGG
GCGGCCCTGATGACCTATGGTCTGGTGATCATCGGCATTCAGGCGCTGTA
CAACCGGCGCATCCGGTATTTTGAGGAGCGTGCGGCCGCCGAACAGGAAC
GACTGGCAAAGGAAGCCGGAACGGTGGACATCGATTCCGGAGAAGAAATG
GTCGTTGGTCCGTCAAGCGCCAATTTCGAGTATCAGCCGGTTTTCAAGCC
GTTCTTCGAAATGGCGGCATTGGCGATCATCGCGACCATTGCCGTTGGCG
AATTGATCCGCAGCTGGGGCGTGGATCTGAACAGCGACGGCAATTTCTGG
TCGTCGCTGCTCGACATCATTCTGGCGTCCGTCTTGTGCTGGCTGGCCTA
TCGTGCCGTTTCCCTGCTCATC
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