mRNA_M-pyrifera_M_contig80437.18843.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80437.18843.1
Unique NamemRNA_M-pyrifera_M_contig80437.18843.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80437.18843.1 vs. uniprot
Match: A0A5A8CHE8_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CHE8_CAFRO)

HSP 1 Score: 129 bits (325), Expect = 2.960e-34
Identity = 66/132 (50.00%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    7 AFFRGITSPLVGNAPMNAVVFAGYGQASRLLE-RYDPEEKVLVGDTRPLLAGMWGGLLQCVIVTPVELVKCQAQTLKEGRGSL----DIARWLVREDGVFRGLFRGFGVTCCRDVPSFGFYFLGYEWGKETL 387
            A+FRGI +PL+GNAP+NAV+FA YG A R ++  + P+        +  +AG WGGLLQC I TP+EL+KC+ Q  +   G +    D  R LV E G+ RGLFRGFG T  RDVPSF  YF  YE  K+ L
Sbjct:   63 AWFRGIAAPLLGNAPVNAVMFAAYGNAKRAMDLEWGPDPPGKTSHAKAAIAGGWGGLLQCAITTPMELIKCRQQVTQGRTGHIPGMGDTVRALVSEAGLVRGLFRGFGATVLRDVPSFAAYFWAYEVTKDAL 194          
BLAST of mRNA_M-pyrifera_M_contig80437.18843.1 vs. uniprot
Match: A0A5A8DVV3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DVV3_CAFRO)

HSP 1 Score: 122 bits (305), Expect = 1.650e-32
Identity = 62/122 (50.82%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    7 AFFRGITSPLVGNAPMNAVVFAGYGQASRLLE-RYDPEEKVLVGDTRPLLAGMWGGLLQCVIVTPVELVKCQAQTLKEGRGSL----DIARWLVREDGVFRGLFRGFGVTCCRDVPSFGFYF 357
            A+FRGI +PL+GNAP+NAV+FA YG A R ++  + P+        +  +AG WGGLLQC I TP+EL+KC+ Q  +   G +    D  R LV E G+ RGLFRGFG T  RDVPSF  YF
Sbjct:   63 AWFRGIAAPLLGNAPVNAVMFAAYGNAKRAMDLEWGPDPPGKTSHAKAAIAGGWGGLLQCAITTPMELIKCRQQVTQGRTGHIPGMGDTVRALVSEAGLVRGLFRGFGATVLRDVPSFAAYF 184          
BLAST of mRNA_M-pyrifera_M_contig80437.18843.1 vs. uniprot
Match: A0A7S2TM12_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TM12_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 3.570e-27
Identity = 66/145 (45.52%), Postives = 83/145 (57.24%), Query Frame = 1
Query:    1 FGAFFRGITSPLVGNAPMNAVVFAGYGQASRLLERYDPE-----------EKVLVGDTRPLLAGMWGGLLQCVIVTPVELVKCQAQT-----LKEGRGSLDIARWLVREDGVFRGLFRGFGVTCCRDVPSFGFYFLGYEWGKETL 387
            F A F+GITSPLVGNAPM A+VF   G A+RL++RY P            +K L    R  LAG W G+ Q  +  PVEL+KCQ Q      LK  +G +D A  L R  G+  GL+RGF  T  RD P++G YF+ YE+ K  L
Sbjct:   45 FLALFKGITSPLVGNAPMQAIVFGMNGNANRLMDRYVPALREKPHEVSGGKKPLPNLARMYLAGTWAGIGQLSVCVPVELIKCQLQVQQDSKLKLYKGPMDCAYKLWRSGGML-GLYRGFWATFWRDAPTYGLYFVVYEYTKWRL 188          
BLAST of mRNA_M-pyrifera_M_contig80437.18843.1 vs. uniprot
Match: A0A7S0H341_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H341_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 1.890e-25
Identity = 62/140 (44.29%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    7 AFFRGITSPLVGNAPMNAVVFAGYGQASRLLERYDP----EEKVLVGDT----RPLLAGMWGGLLQCVIVTPVELVKC-----QAQTLKEGRGSLDIARWLVREDGVFRGLFRGFGVTCCRDVPSFGFYFLGYEWGKETL 387
            A F+G+TSPLVGNAPM A+VF   G A+R++++Y P    +E+ L G      R  LAG W G+ Q  +  PVEL+KC     Q Q +K  +G  D  R + ++ GV  GL+RGF  T  RD PS+G YF+ YE  K  L
Sbjct:  102 ALFKGMTSPLVGNAPMQAIVFGMNGNANRIMDKYIPSLRQKERDLPGSKPNFLRLYLAGTWAGIGQLSVCVPVELIKCKLQVQQDQKVKTFKGPWDCVRQIYQKSGVL-GLYRGFWATFWRDAPSYGLYFVLYEMSKWRL 240          
BLAST of mRNA_M-pyrifera_M_contig80437.18843.1 vs. uniprot
Match: A0A067CCT3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CCT3_SAPPC)

HSP 1 Score: 105 bits (263), Expect = 3.150e-25
Identity = 62/131 (47.33%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    1 FGAFFRGITSPLVGNAPMNAVVFAGYGQASRLLERYDPEEKVLVGDTRPLLAGMWGGLLQCVIVTPVELVKCQAQ--TLKEGRGSLDIARWLVREDGVFRGLFRGFGVTCCRDVPSFGFYFLGYEWGKETL 387
            F  F++G+ SP+V NAP+NAVVFA YGQASR L    P     +   +  LAG   GL Q     P ELVK Q Q  T      S   AR +VR+ GV RGL+ G+ +T  RDVP+FG YF  YE  KE L
Sbjct:   58 FRGFYKGMVSPIVSNAPINAVVFAIYGQASRALAGDAP-----LSPGQQYLAGALAGLAQVTFSAPAELVKIQMQVDTRTSASSSFACARQIVRQHGVSRGLYHGWQLTILRDVPAFGSYFFTYEVAKEML 183          
BLAST of mRNA_M-pyrifera_M_contig80437.18843.1 vs. uniprot
Match: A0A1V9ZPP3_9STRA (Mitochondrial carnitine/acylcarnitine carrier protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZPP3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.570e-25
Identity = 59/128 (46.09%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   10 FFRGITSPLVGNAPMNAVVFAGYGQASRLLERYDPEEKVLVGDTRPLLAGMWGGLLQCVIVTPVELVKCQAQ--TLKEGRGSLDIARWLVREDGVFRGLFRGFGVTCCRDVPSFGFYFLGYEWGKETL 387
            F++G+ SP++ NAP+NAVVFA YGQASR L   DP     +   +  LAG   GL Q     P ELVK Q Q  T    + S+  A  +VR+ GVF+GL+ G+ +T  RDVP+FG YF  YE  K+ L
Sbjct:   64 FYKGMLSPIISNAPINAVVFAIYGQASRALAGDDP-----LTPGQQYLAGALAGLAQVTFSAPAELVKIQMQVATRASSQSSMQCAARIVRKYGVFKGLYHGWQLTVLRDVPAFGSYFFTYEVAKDLL 186          
BLAST of mRNA_M-pyrifera_M_contig80437.18843.1 vs. uniprot
Match: W4GM92_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GM92_9STRA)

HSP 1 Score: 102 bits (254), Expect = 6.090e-24
Identity = 54/127 (42.52%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   13 FRGITSPLVGNAPMNAVVFAGYGQASRLLERYDPEEKVLVGDTRPLLAGMWGGLLQCVIVTPVELVKC--QAQTLKEGRGSLDIARWLVREDGVFRGLFRGFGVTCCRDVPSFGFYFLGYEWGKETL 387
            ++GI SP++ NAP+NAVVFA YGQ SR++     E    +   +  +AG + GL Q +   P ELVK   Q  T    + +L  AR L R+ G++RGL+RG+ +T  RDVP+FG YF  Y+  K+ L
Sbjct:   60 YKGILSPILSNAPINAVVFAVYGQVSRVIATSTNEP---LTPAQQCVAGSFAGLFQVIFAAPAELVKITMQVNTTASKQSALACARHLARQHGIYRGLYRGWQLTMLRDVPAFGSYFFAYDVMKQAL 183          
BLAST of mRNA_M-pyrifera_M_contig80437.18843.1 vs. uniprot
Match: A0A8K1FBZ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBZ8_PYTOL)

HSP 1 Score: 102 bits (254), Expect = 8.100e-24
Identity = 53/132 (40.15%), Postives = 81/132 (61.36%), Query Frame = 1
Query:   10 FFRGITSPLVGNAPMNAVVFAGYGQASRLLERYDPEEKVLVGDTRPLLAGMWGGLLQCVIVTPVELVKCQAQTLKEG------RGSLDIARWLVREDGVFRGLFRGFGVTCCRDVPSFGFYFLGYEWGKETL 387
            FF+G++SPL G+A  NA++FA Y +  RL++      K+    +    AG+ GG  QC  VTP EL+KC+ Q +++G      RG  D  + + + +G+ RGLF G+ +T CR+VP+FGFYF  YE+ K  +
Sbjct:   72 FFKGMSSPLFGSAWTNAIMFATYERTLRLIDDNAQSPKL----SSVFTAGLVGGFFQCTAVTPTELIKCRLQ-VQDGHESSHYRGPADCVKHIYKRNGI-RGLFLGYPITLCREVPAFGFYFFAYEYAKRRM 197          
BLAST of mRNA_M-pyrifera_M_contig80437.18843.1 vs. uniprot
Match: A0A1W0A7C8_9STRA (Mitochondrial carnitine/acylcarnitine carrier protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7C8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.340e-23
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = 1
Query:   10 FFRGITSPLVGNAPMNAVVFAGYGQASRLLERYDPEEKVLVGDTRPLLAGMWGGLLQCVIVTPVELVKCQAQ--TLKEGRGSLDIARWLVREDGVFRGLFRGFGVTCCRDVPSFGFYFLGYEWGKETL 387
            F++G+ SP+V NAP+NA VFA YGQ SRLL   +      +   +  LAG   GL Q +   P ELVK Q Q  T    + S + AR ++++ G+ RGL+ G+ +T  RDVP+FG YF  YE  KE L
Sbjct:   62 FYKGMVSPIVSNAPINAAVFAIYGQTSRLLSSGET-----LSPGQQFLAGAMSGLAQVIFSAPAELVKIQMQVDTHARHKSSFECARRILKKHGLSRGLYHGWQLTVLRDVPAFGSYFFTYELAKEYL 184          
BLAST of mRNA_M-pyrifera_M_contig80437.18843.1 vs. uniprot
Match: A0A485KVM5_9STRA (Aste57867_12465 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVM5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.570e-22
Identity = 56/127 (44.09%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   13 FRGITSPLVGNAPMNAVVFAGYGQASRLLERYDPEEKVLVGDTRPLLAGMWGGLLQCVIVTPVELVKC--QAQTLKEGRGSLDIARWLVREDGVFRGLFRGFGVTCCRDVPSFGFYFLGYEWGKETL 387
            ++GI SP+V NAP+NAVVFA YGQASR L      +   +   +   AG   G  Q    +P ELVK   Q  T      +   AR LVR  GV+RGL+RG+ +T  RDVP+FG YF  Y+  K  L
Sbjct:   60 YKGILSPIVSNAPINAVVFAVYGQASRFLSSSSAVDGNSLTPLQQCCAGSMAGFFQVAFSSPAELVKITMQVNTTASKDSAFACARDLVRRYGVYRGLYRGWQLTMMRDVPAFGSYFFAYDVMKGAL 186          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80437.18843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CHE8_CAFRO2.960e-3450.00Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DVV3_CAFRO1.650e-3250.82Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S2TM12_9EUKA3.570e-2745.52Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0H341_9EUKA1.890e-2544.29Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A067CCT3_SAPPC3.150e-2547.33Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZPP3_9STRA6.570e-2546.09Mitochondrial carnitine/acylcarnitine carrier prot... [more]
W4GM92_9STRA6.090e-2442.52Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A8K1FBZ8_PYTOL8.100e-2440.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1W0A7C8_9STRA1.340e-2343.75Mitochondrial carnitine/acylcarnitine carrier prot... [more]
A0A485KVM5_9STRA2.570e-2244.09Aste57867_12465 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80437contigM-pyrifera_M_contig80437:172..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue4.1e-20
Seed eggNOG ortholog112098.XP_008605555.1
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGsKOG0762@1,KOG0762@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.2183795-CDS-M-pyrifera_M_contig80437:171..5581622816710.2183795-CDS-M-pyrifera_M_contig80437:171..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80437 172..558 +
1692278133.917838-CDS-M-pyrifera_M_contig80437:171..5581692278133.917838-CDS-M-pyrifera_M_contig80437:171..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80437 172..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80437.18843.1prot_M-pyrifera_M_contig80437.18843.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80437 172..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80437.18843.1

>prot_M-pyrifera_M_contig80437.18843.1 ID=prot_M-pyrifera_M_contig80437.18843.1|Name=mRNA_M-pyrifera_M_contig80437.18843.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
FGAFFRGITSPLVGNAPMNAVVFAGYGQASRLLERYDPEEKVLVGDTRPL
LAGMWGGLLQCVIVTPVELVKCQAQTLKEGRGSLDIARWLVREDGVFRGL
FRGFGVTCCRDVPSFGFYFLGYEWGKETL
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mRNA from alignment at M-pyrifera_M_contig80437:172..558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80437.18843.1 ID=mRNA_M-pyrifera_M_contig80437.18843.1|Name=mRNA_M-pyrifera_M_contig80437.18843.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig80437:172..558+ (Macrocystis pyrifera P11B4 male)
TTTGGTGCTTTTTTCCGTGGGATCACTTCTCCTCTGGTTGGGAACGCTCC GATGAACGCGGTGGTGTTCGCGGGGTACGGGCAGGCGAGCCGTTTGCTGG AGCGGTACGACCCGGAGGAGAAGGTGCTGGTGGGGGACACGCGCCCGCTG CTGGCGGGGATGTGGGGCGGGCTGTTGCAGTGCGTGATCGTGACGCCCGT GGAGCTGGTCAAGTGCCAGGCGCAGACGCTCAAGGAGGGCCGAGGCAGCC TGGACATCGCGCGCTGGCTCGTCAGGGAGGACGGCGTCTTTCGGGGCCTC TTCCGGGGCTTCGGCGTCACGTGCTGCAGGGACGTGCCCTCCTTCGGGTT CTACTTCCTCGGGTACGAGTGGGGAAAAGAAACGCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80437:172..558+

>mRNA_M-pyrifera_M_contig80437.18843.1 ID=mRNA_M-pyrifera_M_contig80437.18843.1|Name=mRNA_M-pyrifera_M_contig80437.18843.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig80437:172..558+ (Macrocystis pyrifera P11B4 male)
TTTGGTGCTTTTTTCCGTGGGATCACTTCTCCTCTGGTTGGGAACGCTCC
GATGAACGCGGTGGTGTTCGCGGGGTACGGGCAGGCGAGCCGTTTGCTGG
AGCGGTACGACCCGGAGGAGAAGGTGCTGGTGGGGGACACGCGCCCGCTG
CTGGCGGGGATGTGGGGCGGGCTGTTGCAGTGCGTGATCGTGACGCCCGT
GGAGCTGGTCAAGTGCCAGGCGCAGACGCTCAAGGAGGGCCGAGGCAGCC
TGGACATCGCGCGCTGGCTCGTCAGGGAGGACGGCGTCTTTCGGGGCCTC
TTCCGGGGCTTCGGCGTCACGTGCTGCAGGGACGTGCCCTCCTTCGGGTT
CTACTTCCTCGGGTACGAGTGGGGAAAAGAAACGCTATTTGGTGCTTTTT
TCCGTGGGATCACTTCTCCTCTGGTTGGGAACGCTCCGATGAACGCGGTG
GTGTTCGCGGGGTACGGGCAGGCGAGCCGTTTGCTGGAGCGGTACGACCC
GGAGGAGAAGGTGCTGGTGGGGGACACGCGCCCGCTGCTGGCGGGGATGT
GGGGCGGGCTGTTGCAGTGCGTGATCGTGACGCCCGTGGAGCTGGTCAAG
TGCCAGGCGCAGACGCTCAAGGAGGGCCGAGGCAGCCTGGACATCGCGCG
CTGGCTCGTCAGGGAGGACGGCGTCTTTCGGGGCCTCTTCCGGGGCTTCG
GCGTCACGTGCTGCAGGGACGTGCCCTCCTTCGGGTTCTACTTCCTCGGG
TACGAGTGGGGAAAAGAAACGCTA
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