mRNA_M-pyrifera_M_contig8042.18837.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8042.18837.1
Unique NamemRNA_M-pyrifera_M_contig8042.18837.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8042.18837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8042contigM-pyrifera_M_contig8042:1229..2674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size915
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.9185855-CDS-M-pyrifera_M_contig8042:1228..15421622816709.9185855-CDS-M-pyrifera_M_contig8042:1228..1542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8042 1229..1542 +
1692278133.7533846-CDS-M-pyrifera_M_contig8042:1228..15421692278133.7533846-CDS-M-pyrifera_M_contig8042:1228..1542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8042 1229..1542 +
1622816709.93275-CDS-M-pyrifera_M_contig8042:2073..26741622816709.93275-CDS-M-pyrifera_M_contig8042:2073..2674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8042 2074..2674 +
1692278133.7651525-CDS-M-pyrifera_M_contig8042:2073..26741692278133.7651525-CDS-M-pyrifera_M_contig8042:2073..2674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8042 2074..2674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8042.18837.1prot_M-pyrifera_M_contig8042.18837.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8042 1229..2674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8042.18837.1

>prot_M-pyrifera_M_contig8042.18837.1 ID=prot_M-pyrifera_M_contig8042.18837.1|Name=mRNA_M-pyrifera_M_contig8042.18837.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=305bp
NSTAEHGGAAFFESSVSAITHTSFTGNTASGDGGAMHVGSSNVTLGGSVR
FEGNIASSGGALYLVDGSIATVTANNASFALNTATLDGGSLWAQESTVHV
SGQADSLVVDGDIVFANNSGSALTYDQSVIEISGNAVWEGNRAPEYDGGG
GLRMWNSTLRVHSSGKSVFRGNTASFGGAARFYNCTLVIDGEVLFVDNVA
KDSGGAVDMDHSTLDVAGRVVFEKNIAVVDGGGITSSESNTTIQHTGTAE
FYGNGAESAGAIYIDNDTLSVHGKVLFAHNFADYRGGAVNSDHSVFTVTA
TGTAE
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mRNA from alignment at M-pyrifera_M_contig8042:1229..2674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8042.18837.1 ID=mRNA_M-pyrifera_M_contig8042.18837.1|Name=mRNA_M-pyrifera_M_contig8042.18837.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at M-pyrifera_M_contig8042:1229..2674+ (Macrocystis pyrifera P11B4 male)
AACAGTACTGCTGAACATGGAGGGGCTGCGTTCTTCGAGAGCTCGGTGTC
TGCGATTACGCACACGTCATTCACCGGCAACACAGCTTCTGGAGATGGTG
GTGCAATGCATGTCGGATCATCCAACGTTACGCTCGGTGGAAGCGTGCGT
TTCGAGGGCAACATTGCGTCGAGCGGCGGCGCTTTGTATCTGGTGGACGG
CTCGATTGCAACTGTCACCGCCAACAACGCCTCTTTCGCTTTGAATACCG
CAACCCTTGATGGGGGGAGTCTCTGGGCCCAGGAATCGACTGTACACGTG
TCCGGACAAGCTGAGTTTGGCGGCAATGTGGCAGAGTTTGGAGGTGCTGC
CTACGTCGACAATTGTTCGCTTTTCTTCGACGGCGACGTTCGGTTTGTAA
ACAATGTTGCAATAGACAGTGGCGGCGCTATCAGCGGCGAACATTCAGTC
ATCGATATTACTGGCGCCGTCGCGTTCGAAAAAAACTCGGCGCTTGTCAC
CGGCGGGAGTCTGACAATGTGCGAGACAAGTGTGCATGTGCAGGTTTTGG
GAAAGGCCGAATTTGTCAGTAACACCGCAGAGTTTGAGGGTTCTGCCTAC
ATGAGCAGTAGTTCGCTCGTAGTTGACGGCGATATTATCTTCGCCAACAA
CAGCGGCGGTGCCCTGTACAGCGATTTATCGGTGATCAACATTTCAGGCA
ACGCCCGTTGGGAACAAAACCAGTCACCCGAATATGGTGGTGGGTTGCTG
ACGTGGAAGACAGCTACTCACGTGCAGCGCTCAGGCAGAGCGGAGTTTGT
CGGTAACACTGCAGCGTATGGAGGTGCCTCCTACATGAGCATTAGTTCGC
TGGTAGTCGACGGCGATATTGTCTTCGCTAACAACAGCGGCAGTGCTCTG
ACCTACGACCAATCTGTAATCGAAATTTCTGGCAACGCTGTTTGGGAAGG
AAATCGCGCACCCGAATACGATGGTGGTGGGGGTTTGAGAATGTGGAATA
GTACTCTGCGAGTGCATTCCTCCGGTAAATCGGTTTTTCGCGGTAACACT
GCAAGTTTTGGTGGTGCTGCCAGATTCTATAATTGCACGCTTGTCATCGA
CGGCGAGGTACTCTTCGTGGATAACGTCGCCAAAGATAGTGGTGGCGCTG
TTGACATGGATCATTCAACTTTGGACGTTGCCGGTAGGGTTGTATTCGAG
AAGAACATCGCGGTGGTGGATGGTGGAGGCATCACATCATCGGAATCCAA
TACAACGATCCAGCACACGGGTACAGCTGAGTTTTACGGCAATGGCGCAG
AATCCGCAGGGGCTATCTATATCGACAACGACACGCTTTCGGTCCATGGT
AAAGTACTCTTCGCACACAACTTCGCGGATTATCGAGGCGGTGCTGTTAA
CAGCGACCATTCGGTTTTCACCGTCACAGCTACCGGAACCGCCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8042:1229..2674+

>mRNA_M-pyrifera_M_contig8042.18837.1 ID=mRNA_M-pyrifera_M_contig8042.18837.1|Name=mRNA_M-pyrifera_M_contig8042.18837.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1830bp|location=Sequence derived from alignment at M-pyrifera_M_contig8042:1229..2674+ (Macrocystis pyrifera P11B4 male)
AACAGTACTGCTGAACATGGAGGGGCTGCGTTCTTCGAGAGCTCGGTGTC
TGCGATTACGCACACGTCATTCACCGGCAACACAGCTTCTGGAGATGGTG
GTGCAATGCATGTCGGATCATCCAACGTTACGCTCGGTGGAAGCGTGCGT
TTCGAGGGCAACATTGCGTCGAGCGGCGGCGCTTTGTATCTGGTGGACGG
CTCGATTGCAACTGTCACCGCCAACAACGCCTCTTTCGCTTTGAATACCG
CAACCCTTGATGGGGGGAGTCTCTGGGCCCAGGAATCGACTGTACACGTG
TCCGGACAAGCTGAAACAGTACTGCTGAACATGGAGGGGCTGCGTTCTTC
GAGAGCTCGGTGTCTGCGATTACGCACACGTCATTCACCGGCAACACAGC
TTCTGGAGATGGTGGTGCAATGCATGTCGGATCATCCAACGTTACGCTCG
GTGGAAGCGTGCGTTTCGAGGGCAACATTGCGTCGAGCGGCGGCGCTTTG
TATCTGGTGGACGGCTCGATTGCAACTGTCACCGCCAACAACGCCTCTTT
CGCTTTGAATACCGCAACCCTTGATGGGGGGAGTCTCTGGGCCCAGGAAT
CGACTGTACACGTGTCCGGACAAGCTGATTCGCTGGTAGTCGACGGCGAT
ATTGTCTTCGCTAACAACAGCGGCAGTGCTCTGACCTACGACCAATCTGT
AATCGAAATTTCTGGCAACGCTGTTTGGGAAGGAAATCGCGCACCCGAAT
ACGATGGTGGTGGGGGTTTGAGAATGTGGAATAGTACTCTGCGAGTGCAT
TCCTCCGGTAAATCGGTTTTTCGCGGTAACACTGCAAGTTTTGGTGGTGC
TGCCAGATTCTATAATTGCACGCTTGTCATCGACGGCGAGGTACTCTTCG
TGGATAACGTCGCCAAAGATAGTGGTGGCGCTGTTGACATGGATCATTCA
ACTTTGGACGTTGCCGGTAGGGTTGTATTCGAGAAGAACATCGCGGTGGT
GGATGGTGGAGGCATCACATCATCGGAATCCAATACAACGATCCAGCACA
CGGGTACAGCTGAGTTTTACGGCAATGGCGCAGAATCCGCAGGGGCTATC
TATATCGACAACGACACGCTTTCGGTCCATGGTAAAGTACTCTTCGCACA
CAACTTCGCGGATTATCGAGGCGGTGCTGTTAACAGCGACCATTCGGTTT
TCACCGTCACAGCTACCGGAACCGCCGAGTTCGCTGGTAGTCGACGGCGA
TATTGTCTTCGCTAACAACAGCGGCAGTGCTCTGACCTACGACCAATCTG
TAATCGAAATTTCTGGCAACGCTGTTTGGGAAGGAAATCGCGCACCCGAA
TACGATGGTGGTGGGGGTTTGAGAATGTGGAATAGTACTCTGCGAGTGCA
TTCCTCCGGTAAATCGGTTTTTCGCGGTAACACTGCAAGTTTTGGTGGTG
CTGCCAGATTCTATAATTGCACGCTTGTCATCGACGGCGAGGTACTCTTC
GTGGATAACGTCGCCAAAGATAGTGGTGGCGCTGTTGACATGGATCATTC
AACTTTGGACGTTGCCGGTAGGGTTGTATTCGAGAAGAACATCGCGGTGG
TGGATGGTGGAGGCATCACATCATCGGAATCCAATACAACGATCCAGCAC
ACGGGTACAGCTGAGTTTTACGGCAATGGCGCAGAATCCGCAGGGGCTAT
CTATATCGACAACGACACGCTTTCGGTCCATGGTAAAGTACTCTTCGCAC
ACAACTTCGCGGATTATCGAGGCGGTGCTGTTAACAGCGACCATTCGGTT
TTCACCGTCACAGCTACCGGAACCGCCGAG
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