mRNA_M-pyrifera_M_contig80404.18834.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80404.18834.1
Unique NamemRNA_M-pyrifera_M_contig80404.18834.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80404.18834.1 vs. uniprot
Match: D7FN51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN51_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 6.760e-13
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   19 SRTLSDVHTLRLHTYYVPTFCDVCSQLLIGIMQQGLR 129
            SRTLS VH+ RLH+YY PTFCDVCSQLLIGIMQQGL+
Sbjct:  136 SRTLSVVHSFRLHSYYAPTFCDVCSQLLIGIMQQGLQ 172
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BLAST of mRNA_M-pyrifera_M_contig80404.18834.1 vs. uniprot
Match: A0A0B1SS03_OESDE (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1SS03_OESDE)

HSP 1 Score: 50.8 bits (120), Expect = 2.090e-7
Identity = 19/43 (44.19%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 RTCGAESRTLSDVHTLRLHTYYVPTFCDVCSQLLIGIMQQGLR 129
            ++C    R +   HTL +H+Y  PTFCD C +LL G+++QGL+
Sbjct:    5 QSCPQHERLVVHPHTLYVHSYKAPTFCDFCGELLFGLVKQGLK 47
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BLAST of mRNA_M-pyrifera_M_contig80404.18834.1 vs. uniprot
Match: W2TME5_NECAM (Protein kinase C n=1 Tax=Necator americanus TaxID=51031 RepID=W2TME5_NECAM)

HSP 1 Score: 53.9 bits (128), Expect = 3.410e-7
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 RTCGAESRTLSDVHTLRLHTYYVPTFCDVCSQLLIGIMQQGLR 129
            RTC    R +   HTL +H+Y  PTFCD C +LL G+++QGL+
Sbjct:   30 RTCPQHERLVVHPHTLYVHSYKAPTFCDFCGELLFGLVKQGLK 72
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BLAST of mRNA_M-pyrifera_M_contig80404.18834.1 vs. uniprot
Match: A0A0C2FV61_9BILA (Phorbol-ester/DAG-type domain-containing protein (Fragment) n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2FV61_9BILA)

HSP 1 Score: 50.1 bits (118), Expect = 4.830e-7
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:    7 CGAESRTLSDVHTLRLHTYYVPTFCDVCSQLLIGIMQQGLR 129
            C    R +   HTL +H+Y  PTFCD C +LL G+++QGL+
Sbjct:    1 CPQHERLVVHPHTLYVHSYKAPTFCDFCGELLFGLVKQGLK 41
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BLAST of mRNA_M-pyrifera_M_contig80404.18834.1 vs. uniprot
Match: H9IU60_BOMMO (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Bombyx mori TaxID=7091 RepID=H9IU60_BOMMO)

HSP 1 Score: 51.6 bits (122), Expect = 9.820e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   10 GAESRTLSDVHTLRLHTYYVPTFCDVCSQLLIGIMQQGLR 129
            G ES  L   HTL +H+Y  PTFCD C ++L G+++QGL+
Sbjct:   96 GTESLPLMRPHTLAVHSYKAPTFCDFCGEMLFGLVRQGLK 135
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BLAST of mRNA_M-pyrifera_M_contig80404.18834.1 vs. uniprot
Match: A0A0N4XR43_NIPBR (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Nippostrongylus brasiliensis TaxID=27835 RepID=A0A0N4XR43_NIPBR)

HSP 1 Score: 49.7 bits (117), Expect = 1.080e-6
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:    7 CGAESRTLSDVHTLRLHTYYVPTFCDVCSQLLIGIMQQGLR 129
            C    R +   HTL +H+Y  PTFCD C +LL G+++QGL+
Sbjct:   41 CPHHERLVVHPHTLYVHSYKAPTFCDFCGELLFGLVKQGLK 81
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BLAST of mRNA_M-pyrifera_M_contig80404.18834.1 vs. uniprot
Match: A0A3P7YNH8_HELPZ (Uncharacterized protein n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A3P7YNH8_HELPZ)

HSP 1 Score: 52.0 bits (123), Expect = 1.620e-6
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    4 TCGAESRTLSDVHTLRLHTYYVPTFCDVCSQLLIGIMQQGLR 129
            +C    R +   HTL +H+Y VPTFCD C +LL G+++QGL+
Sbjct:  119 SCPQHERLVVHPHTLYVHSYKVPTFCDFCGELLFGLVKQGLK 160
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BLAST of mRNA_M-pyrifera_M_contig80404.18834.1 vs. uniprot
Match: K7HMI3_CAEJA (Phorbol-ester/DAG-type domain-containing protein n=2 Tax=Caenorhabditis japonica TaxID=281687 RepID=K7HMI3_CAEJA)

HSP 1 Score: 51.2 bits (121), Expect = 2.000e-6
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    7 CGAESRTLSDVHTLRLHTYYVPTFCDVCSQLLIGIMQQGLR 129
            C    R +   HTL +H+Y VPTFCD C +LL G+++QGL+
Sbjct:   42 CPQNERIVVHPHTLFVHSYKVPTFCDFCGELLFGLVKQGLK 82
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BLAST of mRNA_M-pyrifera_M_contig80404.18834.1 vs. uniprot
Match: DKF2_CAEBR (Serine/threonine-protein kinase dkf-2 n=1 Tax=Caenorhabditis briggsae TaxID=6238 RepID=DKF2_CAEBR)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    4 TCGAESRTLSDVHTLRLHTYYVPTFCDVCSQLLIGIMQQGLR 129
            +C    R +   HTL +H+Y VPTFCD C +LL G+++QGL+
Sbjct:  303 SCPQNERIVVHPHTLFVHSYKVPTFCDFCGELLFGLVKQGLK 344
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BLAST of mRNA_M-pyrifera_M_contig80404.18834.1 vs. uniprot
Match: DKF2_CAEEL (Serine/threonine-protein kinase dkf-2 n=4 Tax=Caenorhabditis elegans TaxID=6239 RepID=DKF2_CAEEL)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    4 TCGAESRTLSDVHTLRLHTYYVPTFCDVCSQLLIGIMQQGLR 129
            +C    R +   HTL +H+Y VPTFCD C +LL G+++QGL+
Sbjct:  310 SCPQNERIVVHPHTLFVHSYKVPTFCDFCGELLFGLVKQGLK 351
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80404.18834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN51_ECTSI6.760e-1383.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0B1SS03_OESDE2.090e-744.19Phorbol-ester/DAG-type domain-containing protein n... [more]
W2TME5_NECAM3.410e-748.84Protein kinase C n=1 Tax=Necator americanus TaxID=... [more]
A0A0C2FV61_9BILA4.830e-746.34Phorbol-ester/DAG-type domain-containing protein (... [more]
H9IU60_BOMMO9.820e-750.00Phorbol-ester/DAG-type domain-containing protein n... [more]
A0A0N4XR43_NIPBR1.080e-646.34Phorbol-ester/DAG-type domain-containing protein n... [more]
A0A3P7YNH8_HELPZ1.620e-647.62Uncharacterized protein n=1 Tax=Heligmosomoides po... [more]
K7HMI3_CAEJA2.000e-648.78Phorbol-ester/DAG-type domain-containing protein n... [more]
DKF2_CAEBR2.230e-647.62Serine/threonine-protein kinase dkf-2 n=1 Tax=Caen... [more]
DKF2_CAEEL2.230e-647.62Serine/threonine-protein kinase dkf-2 n=4 Tax=Caen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80404contigM-pyrifera_M_contig80404:120..251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue7.7e-11
Seed eggNOG ortholog2880.D7FN51
KEGG koko:K04679,ko:K18052,ko:K19662
KEGG Pathwayko01521,ko04010,ko04012,ko04014,ko04015,ko04020,ko04062,ko04064,ko04066,ko04070,ko04071,ko04140,ko04144,ko04150,ko04270,ko04310,ko04350,ko04370,ko04510,ko04540,ko04650,ko04658,ko04659,ko04660,ko04662,ko04666,ko04670,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04750,ko04911,ko04912,ko04916,ko04918,ko04919,ko04920,ko04921,ko04925,ko04931,ko04933,ko04960,ko04961,ko04970,ko04971,ko04972,ko04973,ko05031,ko05032,ko05140,ko05143,ko05146,ko05161,ko05162,ko05200,ko05205,ko05206,ko05214,ko05223,ko05225,ko05231,map01521,map04010,map04012,map04014,map04015,map04020,map04062,map04064,map04066,map04070,map04071,map04140,map04144,map04150,map04270,map04310,map04350,map04370,map04510,map04540,map04650,map04658,map04659,map04660,map04662,map04666,map04670,map04713,map04720,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04750,map04911,map04912,map04916,map04918,map04919,map04920,map04921,map04925,map04931,map04933,map04960,map04961,map04970,map04971,map04972,map04973,map05031,map05032,map05140,map05143,map05146,map05161,map05162,map05200,map05205,map05206,map05214,map05223,map05225,map05231
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
EggNOG free text desc.1-phosphatidylinositol binding
EggNOG OGsKOG0694@1,KOG0694@2759,KOG1841@1,KOG1841@2759
EC2.7.11.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.8089921-CDS-M-pyrifera_M_contig80404:119..2511622816709.8089921-CDS-M-pyrifera_M_contig80404:119..251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80404 120..251 +
1692278133.696732-CDS-M-pyrifera_M_contig80404:119..2511692278133.696732-CDS-M-pyrifera_M_contig80404:119..251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80404 120..251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80404.18834.1prot_M-pyrifera_M_contig80404.18834.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80404 120..251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80404.18834.1

>prot_M-pyrifera_M_contig80404.18834.1 ID=prot_M-pyrifera_M_contig80404.18834.1|Name=mRNA_M-pyrifera_M_contig80404.18834.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
RTCGAESRTLSDVHTLRLHTYYVPTFCDVCSQLLIGIMQQGLR*
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mRNA from alignment at M-pyrifera_M_contig80404:120..251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80404.18834.1 ID=mRNA_M-pyrifera_M_contig80404.18834.1|Name=mRNA_M-pyrifera_M_contig80404.18834.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig80404:120..251+ (Macrocystis pyrifera P11B4 male)
CGTACGTGCGGCGCAGAGTCTCGCACGCTCTCGGACGTCCACACCCTGCG
CCTGCACACCTACTACGTGCCCACCTTTTGCGACGTATGCTCGCAGCTCC
TCATCGGCATCATGCAGCAGGGGCTAAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80404:120..251+

>mRNA_M-pyrifera_M_contig80404.18834.1 ID=mRNA_M-pyrifera_M_contig80404.18834.1|Name=mRNA_M-pyrifera_M_contig80404.18834.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig80404:120..251+ (Macrocystis pyrifera P11B4 male)
CGTACGTGCGGCGCAGAGTCTCGCACGCTCTCGGACGTCCACACCCTGCG
CCTGCACACCTACTACGTGCCCACCTTTTGCGACGTATGCTCGCAGCTCC
TCATCGGCATCATGCAGCAGGGGCTAAGGTGACGTACGTGCGGCGCAGAG
TCTCGCACGCTCTCGGACGTCCACACCCTGCGCCTGCACACCTACTACGT
GCCCACCTTTTGCGACGTATGCTCGCAGCTCCTCATCGGCATCATGCAGC
AGGGGCTAAGGTGA
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