mRNA_M-pyrifera_M_contig803.18815.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig803.18815.1
Unique NamemRNA_M-pyrifera_M_contig803.18815.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig803.18815.1 vs. uniprot
Match: D8LUB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB9_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 3.820e-76
Identity = 153/276 (55.43%), Postives = 177/276 (64.13%), Query Frame = 1 
Query:   58 IEETVKTCCDNVQKRLQKEFDRNLDIFDRYVKKNVSAATTVASPSRRASTTGGRGHNSGATXXXXXXXXVEAGAGQAATTTADGVGG--GQDRLPSSTXXXXXQDSWILEVSEETPPKRLEEEEELDAEIQHLRKRRRKGLRLYAAMVRKGARDTAVLQDVNDYVEALQMGVSSSFDDNGLTPVPAKVQEAVQSCAELRVTADRAQDLIRRVERQVQGSAENGSMAGGSSGGSGADAAPPAP--RDLQAMFQRSSEKQVVAGGAADYSALEARLKG 873
            IE ++KTCCDNVQ R+Q+EFDRN+DI DRY+KKNV AA   + P                            GA +A    A G  G  G D  P++            EV E TPPKRLEEEE LDAEIQHLRKRRR+GLR  AA+VRKGAR+T +LQDV D+V+ALQMGVSSSFDDNGLTP+P+KVQEAVQSCAELRVTADRAQ L RR+ERQ + SA  G                     RDLQ+MFQRSSE+QVVAG A +YS LE RL+G
Sbjct:   81 IEASIKTCCDNVQTRIQQEFDRNIDILDRYIKKNV-AAVAASVP-------------------------FGPGATEAPAVAAAGEDGRSGNDAAPAA------------EVEEGTPPKRLEEEEALDAEIQHLRKRRRQGLRRCAALVRKGARETVLLQDVKDFVDALQMGVSSSFDDNGLTPIPSKVQEAVQSCAELRVTADRAQALTRRLERQAEQSAGWGXXXXXXXXXXXXXXXXXXXXXRDLQSMFQRSSEQQVVAGSATEYSTLETRLRG 318
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BLAST of mRNA_M-pyrifera_M_contig803.18815.1 vs. uniprot
Match: A0A6H5KN64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN64_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 1.250e-75
Identity = 160/313 (51.12%), Postives = 188/313 (60.06%), Query Frame = 1 
Query:   58 IEETVKTCCDNVQKRLQKEFDRNLDIFDRYVKKNVSAATT--------VASPSRRASTTGGRGHNSGATXXXXXXXXVEAGAGQAATTTADGV--------------GGGQDR----------------LPSSTXXXXXQ-DSWILEVSEETPPKRLEEEEELDAEIQHLRKRRRKGLRLYAAMVRKGARDTAVLQDVNDYVEALQMGVSSSFDDNGLTPVPAKVQEAVQSCAELRVTADRAQDLIRRVERQVQGSAENGSMAGGSSGGSGADAAPPAP--RDLQAMFQRSSEKQVVAGGAADYSALEARLKG 873
            IE T+KTCCDNVQ R+Q+EFDRN+DI DRY+KKNV+A             +P+  A+   GR  N  A            GAG A                      G  Q+R                 PS+        D+W  EV E TPPKRLEEEE LDAEIQHLRKRRR+GLR  AA+VR+GAR+T +LQDV D+V+ALQMGVSSSFDDNGLTP+P+KVQEAVQSCAELRVTADRAQ L RR+ERQV+ SAE G                     RDLQ+MFQRSSE+QVVAG A +YS L+ RL+G
Sbjct:   28 IEATIKTCCDNVQTRIQQEFDRNIDILDRYIKKNVAAVAASVPFGPGATEAPAVAAAGEDGRSGNGAAPAAGGW------GAGAAVXXXXXXXXXXXXXXXXXXXXXGDAQERSGXXXXXXXXXXXSSVAPSAKGGAVLGVDAWASEVEEGTPPKRLEEEEALDAEIQHLRKRRRQGLRRCAALVRRGARETVLLQDVKDFVDALQMGVSSSFDDNGLTPIPSKVQEAVQSCAELRVTADRAQALTRRLERQVEQSAEWGXXXXXXXXXXXXXXXXXXXXXRDLQSMFQRSSEQQVVAGSATEYSTLKTRLRG 334
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig803.18815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LUB9_ECTSI3.820e-7655.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN64_9PHAE1.250e-7551.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig803contigM-pyrifera_M_contig803:28535..31470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size876
Cds size876
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig803.18815.1prot_M-pyrifera_M_contig803.18815.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig803 28535..31470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.5068092-CDS-M-pyrifera_M_contig803:28534..290021622816708.5068092-CDS-M-pyrifera_M_contig803:28534..29002Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig803 28535..29002 +
1692278132.794851-CDS-M-pyrifera_M_contig803:28534..290021692278132.794851-CDS-M-pyrifera_M_contig803:28534..29002Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig803 28535..29002 +
1622816708.517862-CDS-M-pyrifera_M_contig803:30516..307181622816708.517862-CDS-M-pyrifera_M_contig803:30516..30718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig803 30517..30718 +
1692278132.8135836-CDS-M-pyrifera_M_contig803:30516..307181692278132.8135836-CDS-M-pyrifera_M_contig803:30516..30718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig803 30517..30718 +
1622816708.528945-CDS-M-pyrifera_M_contig803:31264..314701622816708.528945-CDS-M-pyrifera_M_contig803:31264..31470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig803 31265..31470 +
1692278132.8299634-CDS-M-pyrifera_M_contig803:31264..314701692278132.8299634-CDS-M-pyrifera_M_contig803:31264..31470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig803 31265..31470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig803.18815.1

>prot_M-pyrifera_M_contig803.18815.1 ID=prot_M-pyrifera_M_contig803.18815.1|Name=mRNA_M-pyrifera_M_contig803.18815.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=292bp
QAASKVGGEGAAGGAATASIEETVKTCCDNVQKRLQKEFDRNLDIFDRYV
KKNVSAATTVASPSRRASTTGGRGHNSGATSGGSAGAGVEAGAGQAATTT
ADGVGGGQDRLPSSTTEGGGQDSWILEVSEETPPKRLEEEEELDAEIQHL
RKRRRKGLRLYAAMVRKGARDTAVLQDVNDYVEALQMGVSSSFDDNGLTP
VPAKVQEAVQSCAELRVTADRAQDLIRRVERQVQGSAENGSMAGGSSGGS
GADAAPPAPRDLQAMFQRSSEKQVVAGGAADYSALEARLKG*
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mRNA from alignment at M-pyrifera_M_contig803:28535..31470+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig803.18815.1 ID=mRNA_M-pyrifera_M_contig803.18815.1|Name=mRNA_M-pyrifera_M_contig803.18815.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2936bp|location=Sequence derived from alignment at M-pyrifera_M_contig803:28535..31470+ (Macrocystis pyrifera P11B4 male)
CAGGCAGCGTCTAAGGTAGGAGGAGAAGGAGCGGCCGGCGGGGCCGCCAC
CGCCAGCATTGAGGAAACCGTCAAAACCTGCTGCGATAACGTCCAGAAAC
GCCTGCAAAAGGAATTCGATCGAAATCTCGACATCTTCGATCGTTACGTC
AAGAAGAACGTGTCCGCCGCTACGACGGTGGCCTCCCCCTCTAGGAGAGC
ATCAACCACTGGGGGGAGGGGGCATAACAGTGGAGCTACGTCTGGAGGGA
GCGCGGGGGCAGGGGTGGAGGCGGGGGCGGGACAAGCCGCAACAACAACA
GCCGATGGTGTTGGCGGCGGGCAAGATCGGTTGCCCTCCTCAACGACGGA
GGGGGGGGGGCAGGATTCGTGGATACTAGAGGTGTCGGAAGAAACGCCGC
CGAAGCGATTGGAAGAGGAGGAGGAGCTTGACGCGGAAATCCAGCACCTG
CGAAAACGGCGACGGAAGGTGAGTGGGTGTCGAGATTGTTTTTTTACTCT
CTGGCGAGGGCGTGCATCACGGTAAAAGCCAGAGTCTTCTGTGGTCTTTT
TTTGGGTATATACGTGTACAAACATTTGTGTTTTCGAGGTCGAGTTCTCG
GGGAGAAGGTGTCCACTGCTTCGAAACGGCATGCTCGCGGGGTGTGTGCT
TCTAATTTGGTGTATGGTATCGTTTGCTGCTGTGGCGGGTACGAAGTCTC
GAGAAGAAAACTGAGACGAAACTTCCCAGCGTTTGCTGAAATGTGTCGGA
ACAACATACTGCGCAGTATTTAAAGGCTGCATGGCTGCTGTCGTCGAGGA
GCTGGGGATTGCTGGTTGTTTGCTTAAGCGCCTGTTTTATGAAGTGCAGG
GACATACGCGTTAGGTTATTAGTCTGTGTAGCGTGGCGTTCGTTGATCGG
GATCGGTTTGGCCAAGAGGGTCGAGTAAAAACTAAAAAAGTTAAACCAGT
GGAGGGACGTTTGGTATGTATTTCTCGTGCACACGTCTCGTCTAAATGTT
CTTCTGCCTTCCTTGAGGCCACGACGTGGGTACACAGCTACTCATGTGGG
CACTTCTTCGTTGACGATAAAACTGCCAAAGTTACGCCCCGACGGCATCA
AAACGTACCTCACCCCGAACATATCATGATCTATCTATCTACAGATAGAT
CATCTATATAGTTCCTCACCTGCCGTTGTGAGAGGTTGTGCAGGATCTGC
CTTGTAGGGCAGATCCAACCGAGGAAACGTGTGCTAGGTCGTGCAGAAAT
ATACTGGTCCCGCCCGGCAACATGAAGTAGATCATACGAAATCGGGAATA
TGTGTGCCTCGAAAGATCTACTGTAGATCATGCATGCGGTGGGAATGGTC
TGTCCGAGGTGTGAAACGTGCCCCAGAAAATACAAACTCAAAAGGCACAG
CCCAAGCGCGTTGCCGAGTACGCTAAGAGGTACCCTCCGAGCCGGGCACT
ATTGGGGCCGCAGTAAATAGGACCTACGGTGCACACAAAAACCTATGCCT
TTAGCTACTTTTTCACTACGAATATTAGGTCCTGTTTACTATGGTTCCCC
GTAATAGTAACATTGGCGTCGAAATTCACGCGAGGGGGGGCTCTACGACG
TACTCTTATTATGTCGTAAGTCGTTCTCCCAGCTCTAGAGCATTACAGCT
GACTGAAAGTCAAGTGGAGTTGCTGTTACAATGTACACAATAAGCCGCTT
TCTACTCTGTACGGCTTTTGTCACGGTACCACGGCACGGCCGTTACATCT
TCGCTGAAGGCGTTCATTCAAGCAACAAACAGTTGATCCCCGTGCTTGTA
CGGGTCCGCAGGTCGATAGAGATGGCGCGCGCATGCCACGACAGCAGACC
CCTCTTTGTTCATGAAGCACCCGGTCTATCGTGTTCCTTTTATTCGACCT
TCTTGTGTTTTTTTTTCCCCTTCGTCATCATTGTGCACCTCCTCTCCCCT
GTGCACGCGCCGCGGAAATACCTCTCTTGTAGGGTTTGCGGCTATACGCG
GCGATGGTGCGGAAGGGGGCTCGGGATACGGCGGTGCTGCAGGACGTTAA
CGACTACGTGGAGGCGCTCCAGATGGGCGTGTCGAGCTCGTTCGACGACA
ACGGACTGACGCCGGTGCCGGCGAAGGTTCAGGAAGCGGTGCAGTCGTGC
GCGGAGCTGAGGGTGACGGCGGACCGAGCGCAAGGTGCGGCGGGGGTACT
ACAAACAGCCGGTGGTTGGAATAATGTCGCTCGGCCTCGGCCTGCCCTCG
CCTCTTTTTTTTCGCGTCTTGGTTATCGGGTGCGCGCATGCGTGCTCGCG
CGTGTTATCAAAGCGCTTAGTGAAGGTCTTTATTCGTCGTTTTGTGCGCG
ATGGCGGACGGGAACGGGGATGGGTGTTTTTGAGTCAGCTTGCTTCTGAC
GGTTTTTTTTCGGCGACCCCGGCCCCCGTAGATTCGGCGCCTTTTGTTTT
GTCCTATCTATCGCCAGACACAACTTTAATTTTGTGTACTGTTGGCTCTG
GTGCTCCTCGTGCTACAGTAGAGGCTGTACAGCGTACAGCAGTATATAGC
TCTGTCTGTTTGCTTCGCGTCTCAAAGATACACCGGGTAGCAGCGTTTAT
ACCTGTTGCTTCTTGCTTCGCGTCTTGAAGATACACTGAGCCTCAAGTTT
TTCAGAATTTCTCCCTCCGCGCTCATAACCTCACCCTTTCCGTCTGCCAC
GAATTTTCCTTGCCTGCGCACGAATGAAAGATCTCATAAGACGAGTGGAG
CGCCAAGTCCAAGGGAGCGCAGAAAACGGGTCGATGGCCGGTGGAAGCAG
CGGCGGCTCGGGCGCCGACGCGGCTCCGCCTGCGCCGCGTGACTTGCAGG
CGATGTTCCAACGATCAAGCGAGAAACAGGTTGTTGCGGGGGGCGCTGCG
GACTATTCCGCGCTAGAGGCTAGGCTAAAGGGATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig803:28535..31470+

>mRNA_M-pyrifera_M_contig803.18815.1 ID=mRNA_M-pyrifera_M_contig803.18815.1|Name=mRNA_M-pyrifera_M_contig803.18815.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1752bp|location=Sequence derived from alignment at M-pyrifera_M_contig803:28535..31470+ (Macrocystis pyrifera P11B4 male)
CAGGCAGCGTCTAAGGTAGGAGGAGAAGGAGCGGCCGGCGGGGCCGCCAC
CGCCAGCATTGAGGAAACCGTCAAAACCTGCTGCGATAACGTCCAGAAAC
GCCTGCAAAAGGAATTCGATCGAAATCTCGACATCTTCGATCGTTACGTC
AAGAAGAACGTGTCCGCCGCTACGACGGTGGCCTCCCCCTCTAGGAGAGC
ATCAACCACTGGGGGGAGGGGGCATAACAGTGGAGCTACGTCTGGAGGGA
GCGCGGGGGCAGGGGTGGAGGCGGGGGCGGGACAAGCCGCAACAACAACA
GCCGATGGTGTTGGCGGCGGGCAAGATCGGTTGCCCTCCTCAACGACGGA
GGGGGGGGGGCAGGATTCGTGGATACTAGAGGTGTCGGAAGAAACGCCGC
CGAAGCGATTGGAAGAGGAGGAGGAGCTTGACGCGGAAATCCAGCACCTG
CGAAAACGGCGACGGAAGCAGGCAGCGTCTAAGGTAGGAGGAGAAGGAGC
GGCCGGCGGGGCCGCCACCGCCAGCATTGAGGAAACCGTCAAAACCTGCT
GCGATAACGTCCAGAAACGCCTGCAAAAGGAATTCGATCGAAATCTCGAC
ATCTTCGATCGTTACGTCAAGAAGAACGTGTCCGCCGCTACGACGGTGGC
CTCCCCCTCTAGGAGAGCATCAACCACTGGGGGGAGGGGGCATAACAGTG
GAGCTACGTCTGGAGGGAGCGCGGGGGCAGGGGTGGAGGCGGGGGCGGGA
CAAGCCGCAACAACAACAGCCGATGGTGTTGGCGGCGGGCAAGATCGGTT
GCCCTCCTCAACGACGGAGGGGGGGGGGCAGGATTCGTGGATACTAGAGG
TGTCGGAAGAAACGCCGCCGAAGCGATTGGAAGAGGAGGAGGAGCTTGAC
GCGGAAATCCAGCACCTGCGAAAACGGCGACGGAAGGGTTTGCGGCTATA
CGCGGCGATGGTGCGGAAGGGGGCTCGGGATACGGCGGTGCTGCAGGACG
TTAACGACTACGTGGAGGCGCTCCAGATGGGCGTGTCGAGCTCGTTCGAC
GACAACGGACTGACGCCGGTGCCGGCGAAGGTTCAGGAAGCGGTGCAGTC
GTGCGCGGAGCTGAGGGTGACGGCGGACCGAGCGCAAGGGTTTGCGGCTA
TACGCGGCGATGGTGCGGAAGGGGGCTCGGGATACGGCGGTGCTGCAGGA
CGTTAACGACTACGTGGAGGCGCTCCAGATGGGCGTGTCGAGCTCGTTCG
ACGACAACGGACTGACGCCGGTGCCGGCGAAGGTTCAGGAAGCGGTGCAG
TCGTGCGCGGAGCTGAGGGTGACGGCGGACCGAGCGCAAGATCTCATAAG
ACGAGTGGAGCGCCAAGTCCAAGGGAGCGCAGAAAACGGGTCGATGGCCG
GTGGAAGCAGCGGCGGCTCGGGCGCCGACGCGGCTCCGCCTGCGCCGCGT
GACTTGCAGGCGATGTTCCAACGATCAAGCGAGAAACAGGTTGTTGCGGG
GGGCGCTGCGGACTATTCCGCGCTAGAGGCTAGGCTAAAGGGATAGATCT
CATAAGACGAGTGGAGCGCCAAGTCCAAGGGAGCGCAGAAAACGGGTCGA
TGGCCGGTGGAAGCAGCGGCGGCTCGGGCGCCGACGCGGCTCCGCCTGCG
CCGCGTGACTTGCAGGCGATGTTCCAACGATCAAGCGAGAAACAGGTTGT
TGCGGGGGGCGCTGCGGACTATTCCGCGCTAGAGGCTAGGCTAAAGGGAT
AG
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