mRNA_M-pyrifera_M_contig80247.18804.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80247.18804.1
Unique NamemRNA_M-pyrifera_M_contig80247.18804.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80247.18804.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.440e-17
Identity = 37/90 (41.11%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   46 GIESWIADNGATTHMTPNPDHLYNKRPPSPENAKIFIGNGTELAVEYVGSVDLIFHSTEDVRVTLESVSFIPSLKVNLLSLHTVQAKEAI 315
            G   ++ D GA  H+ P+ + +YN+RPP PE   + +G+G  + VE+ G +D+IFH +EDVRVTL++V  +P L +++LSL+ +Q +  I
Sbjct:  667 GSTVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCSEDVRVTLQNVGVVPGLALDILSLNKIQDRHEI 756          
BLAST of mRNA_M-pyrifera_M_contig80247.18804.1 vs. uniprot
Match: UPI0007AFD797 (uncharacterized protein LOC107632877 n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI0007AFD797)

HSP 1 Score: 57.0 bits (136), Expect = 2.350e-7
Identity = 26/87 (29.89%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   55 SWIADNGATTHMTPNPDHLYNKRPPSPENAKIFIGNGTELAVEYVGSVDLIFHSTEDVRVTLESVSFIPSLKVNLLSLHTVQAKEAI 315
            SW+AD+GA+ H+TP+P +L +    + +  ++F+GNGT +A++  GS  +++    ++   L+++  +P +  NLLS+    A+  +
Sbjct:  125 SWLADSGASHHLTPDPSNLLSSFASNTDANQVFVGNGTGIAIKNSGSF-ILYDKYTNISFCLKNLLHVPQITQNLLSVSRFAAENGV 210          
BLAST of mRNA_M-pyrifera_M_contig80247.18804.1 vs. uniprot
Match: A0A540NKQ8_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NKQ8_MALBA)

HSP 1 Score: 56.2 bits (134), Expect = 5.820e-7
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   55 SWIADNGATTHMTPNPDHLYNKRPPSPENAKIFIGNGTELAVEYVGSVDLIFHSTEDVRVTLESVSFIPSLKVNLLS 285
            SW  D G T H+T +     ++R PS E  ++F+GNGT++ VE VGS+ L   S     +TL +V ++PS++ NL S
Sbjct:  251 SWWFDTGCTVHITNSLQGFKSQREPSREVYRVFVGNGTKVDVESVGSIKLELSS--GFILTLNNVLYVPSMRRNLFS 325          
BLAST of mRNA_M-pyrifera_M_contig80247.18804.1 vs. uniprot
Match: A0A1R3G8F0_COCAP (NB-ARC domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3G8F0_COCAP)

HSP 1 Score: 54.7 bits (130), Expect = 2.090e-6
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   58 WIADNGATTHMTPNPDHLYNKRPPSPENAKIFIGNGTELAVEYVGSVDLIFHSTEDVRVTLESVSFIPSLKVNLLSL 288
            W+AD+GAT+HMT NP  L      S  N  ++IG+G  L + ++G   L   S+   + +L ++ F+P LK NLLS+
Sbjct:  596 WLADSGATSHMTSNPSLLQQSTLYS-GNDGVYIGDGKSLRISHIGDSSLCIGSS---KFSLTNILFVPELKENLLSI 668          
BLAST of mRNA_M-pyrifera_M_contig80247.18804.1 vs. uniprot
Match: A0A4Y1QKU2_PRUDU (Wall associated kinase-like 7 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QKU2_PRUDU)

HSP 1 Score: 54.3 bits (129), Expect = 2.840e-6
Identity = 30/85 (35.29%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   55 SWIADNGATTHMTPNPDHLYNKRPPSPENAKIFIGNGTELAVEYVGSVDLIFHSTEDVRVTLESVSFIPSLKVNLLSL-HTVQAK 306
            SW  D+GAT H++ +      KR P+    K+F+GNG ++ VE++G+V +   S     + L  V+++PS++ NL+S+   V+AK
Sbjct:  185 SWWLDSGATIHVSNSLQGFTTKRVPNKYELKVFVGNGVQVEVEFMGAVKIELES--GFTLDLFEVAYVPSMRRNLVSVARLVKAK 267          
BLAST of mRNA_M-pyrifera_M_contig80247.18804.1 vs. uniprot
Match: A0A1R3JWT7_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JWT7_COCAP)

HSP 1 Score: 52.4 bits (124), Expect = 1.390e-5
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   58 WIADNGATTHMTPNPDHLYNKRPPSPENAKIFIGNGTELAVEYVGSVDLIFHSTEDVRVTLESVSFIPSLKVNLLSL 288
            W+AD+GAT+HMT NP  L      S  N  ++IG+G  L + ++G   L    +   + +L ++ F+P LK NLLS+
Sbjct:  334 WLADSGATSHMTSNPSLLQQSTLYS-GNDGVYIGDGKSLRISHIGDSSLCIGFS---KFSLTNILFVPELKENLLSI 406          
BLAST of mRNA_M-pyrifera_M_contig80247.18804.1 vs. uniprot
Match: A0A2P6R9W2_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R9W2_ROSCH)

HSP 1 Score: 51.6 bits (122), Expect = 2.490e-5
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   55 SWIADNGATTHMTPNPDHLYNKRPPSPENAKIFIGNGTELAVEYVGSVDLIFHSTEDVRVTLESVSFIPSLKVNLLSLH 291
            +W+AD+GA+ H+TP+  HL ++  P   NAK+ +GNG  L + ++GS   + H T      L +V  +P +  NLLS++
Sbjct:  380 TWLADSGASQHVTPDLSHL-SEVTPYTGNAKLTVGNGNNLQIAHIGSS--LMH-TPSASFKLTNVLHVPEITHNLLSVN 454          
BLAST of mRNA_M-pyrifera_M_contig80247.18804.1 vs. uniprot
Match: A0A2P6S2B1_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B1_ROSCH)

HSP 1 Score: 51.6 bits (122), Expect = 2.500e-5
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1
Query:   58 WIADNGATTHMTPNPDHLYNKRPPSPENAKIFIGNGTELAVEYVGSVDLIFHSTEDVRVTLESVSFIPSLKVNLLSLH 291
            W+AD GAT HMT NP  L N  P  P    + IGNG +LA+ ++G+  L         + L+++  IP L  +LLS++
Sbjct:  434 WLADTGATNHMTHNPQVLNNVIP-YPTTDGVQIGNGNQLAITHIGNAMLGI-------LKLDNILLIPDLAAHLLSIY 503          
BLAST of mRNA_M-pyrifera_M_contig80247.18804.1 vs. uniprot
Match: A0A6P5SG96_PRUAV (uncharacterized protein LOC110758400 n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5SG96_PRUAV)

HSP 1 Score: 51.2 bits (121), Expect = 3.280e-5
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 1
Query:   52 ESWIADNGATTHMTPNPDHLYNKRPPSPENAKIFIGNGTELAVEYVGSVDLIFHSTEDVRVTLESVSFIPSLKVNLLSLH 291
            E WIAD+GAT HMT +  ++ +   P P N  I   NG  + + ++G   LI H+       L SV  +P +  NLLSL+
Sbjct:  370 EYWIADSGATNHMTADISNI-SVAAPYPTNETIATANGAGIHIAHIGKSSLITHTHS---FALNSVLHVPQISANLLSLN 445          
BLAST of mRNA_M-pyrifera_M_contig80247.18804.1 vs. uniprot
Match: A0A8J5XXX0_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5XXX0_9ROSI)

HSP 1 Score: 51.2 bits (121), Expect = 3.490e-5
Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 1
Query:   52 ESWIADNGATTHMTPNPDHLYNKRPPSPENAKIFIGNGTELAVEYVGSVDLIFHSTEDVRVTLESVSFIPSLKVNLLSLHTVQAK 306
            E WI D+G T HM+PN D        S     + IGN     +  VG++ +     + V  TL  + ++P LK+NL+SL T+ +K
Sbjct:  263 EEWILDSGCTFHMSPNRDWFTTYETVS--EGVVLIGNNASCEIAGVGTIKVKMF--DGVVRTLSDIRYVPELKINLISLSTLDSK 343          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80247.18804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JVD9_9PHAE2.440e-1741.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0007AFD7972.350e-729.89uncharacterized protein LOC107632877 n=1 Tax=Arach... [more]
A0A540NKQ8_MALBA5.820e-740.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A1R3G8F0_COCAP2.090e-638.96NB-ARC domain-containing protein n=1 Tax=Corchorus... [more]
A0A4Y1QKU2_PRUDU2.840e-635.29Wall associated kinase-like 7 n=1 Tax=Prunus dulci... [more]
A0A1R3JWT7_COCAP1.390e-537.66Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A2P6R9W2_ROSCH2.490e-536.71Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6S2B1_ROSCH2.500e-538.46Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A6P5SG96_PRUAV3.280e-537.50uncharacterized protein LOC110758400 n=1 Tax=Prunu... [more]
A0A8J5XXX0_9ROSI3.490e-534.12Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80247contigM-pyrifera_M_contig80247:500..814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816707.9051914-CDS-M-pyrifera_M_contig80247:499..8141622816707.9051914-CDS-M-pyrifera_M_contig80247:499..814Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80247 500..814 +
1692278132.4257543-CDS-M-pyrifera_M_contig80247:499..8141692278132.4257543-CDS-M-pyrifera_M_contig80247:499..814Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80247 500..814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80247.18804.1prot_M-pyrifera_M_contig80247.18804.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80247 500..814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80247.18804.1

>prot_M-pyrifera_M_contig80247.18804.1 ID=prot_M-pyrifera_M_contig80247.18804.1|Name=mRNA_M-pyrifera_M_contig80247.18804.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
TAQSALVGQYDVLGRGIESWIADNGATTHMTPNPDHLYNKRPPSPENAKI
FIGNGTELAVEYVGSVDLIFHSTEDVRVTLESVSFIPSLKVNLLSLHTVQ
AKEAI
back to top

mRNA from alignment at M-pyrifera_M_contig80247:500..814+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80247.18804.1 ID=mRNA_M-pyrifera_M_contig80247.18804.1|Name=mRNA_M-pyrifera_M_contig80247.18804.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig80247:500..814+ (Macrocystis pyrifera P11B4 male)
ACAGCACAATCTGCTTTGGTCGGTCAGTACGATGTTTTGGGAAGGGGAAT AGAGAGTTGGATTGCGGACAACGGGGCGACAACGCACATGACCCCGAACC CGGACCACTTGTATAACAAGCGCCCCCCATCCCCTGAGAACGCCAAAATA TTTATTGGTAACGGAACAGAATTAGCAGTGGAGTACGTAGGCAGCGTGGA TTTAATTTTTCACAGCACGGAAGACGTACGCGTAACCTTAGAGAGTGTTT CATTTATTCCTAGCCTGAAGGTAAACTTGCTGTCGCTGCACACTGTCCAG GCCAAAGAGGCGATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig80247:500..814+

>mRNA_M-pyrifera_M_contig80247.18804.1 ID=mRNA_M-pyrifera_M_contig80247.18804.1|Name=mRNA_M-pyrifera_M_contig80247.18804.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig80247:500..814+ (Macrocystis pyrifera P11B4 male)
ACAGCACAATCTGCTTTGGTCGGTCAGTACGATGTTTTGGGAAGGGGAAT
AGAGAGTTGGATTGCGGACAACGGGGCGACAACGCACATGACCCCGAACC
CGGACCACTTGTATAACAAGCGCCCCCCATCCCCTGAGAACGCCAAAATA
TTTATTGGTAACGGAACAGAATTAGCAGTGGAGTACGTAGGCAGCGTGGA
TTTAATTTTTCACAGCACGGAAGACGTACGCGTAACCTTAGAGAGTGTTT
CATTTATTCCTAGCCTGAAGGTAAACTTGCTGTCGCTGCACACTGTCCAG
GCCAAAGAGGCGATCACAGCACAATCTGCTTTGGTCGGTCAGTACGATGT
TTTGGGAAGGGGAATAGAGAGTTGGATTGCGGACAACGGGGCGACAACGC
ACATGACCCCGAACCCGGACCACTTGTATAACAAGCGCCCCCCATCCCCT
GAGAACGCCAAAATATTTATTGGTAACGGAACAGAATTAGCAGTGGAGTA
CGTAGGCAGCGTGGATTTAATTTTTCACAGCACGGAAGACGTACGCGTAA
CCTTAGAGAGTGTTTCATTTATTCCTAGCCTGAAGGTAAACTTGCTGTCG
CTGCACACTGTCCAGGCCAAAGAGGCGATC
back to top