mRNA_M-pyrifera_M_contig80236.18803.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig80236.18803.1
Unique Name	mRNA_M-pyrifera_M_contig80236.18803.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot
Match: A0A482RS88_9ARCH (Protein kinase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RS88_9ARCH)

HSP 1 Score: 161 bits (407), Expect = 6.870e-47
Identity = 79/118 (66.95%), Postives = 100/118 (84.75%), Query Frame = 1

Query:    1 VKWQRGQKLGQGAVGEVFLGLSLETGELMAVKQLRTEEVRRGELASLEHEVRMLRRLRHPNIVRYLGTELQDGILSIFLEYVPGGSIRSFLQRFGALAEPVIRAYTRQLLLGLEYLHR 354
            ++W+RG+ LGQGA G V+LGL+++TGELMAVKQ+ T+EV R EL+SLE+E+ +LR LRH NIVRY+GTEL    LSIFLEYVPGGS+++ + +FGAL E V R+YTRQLLLGLEYLHR
Sbjct:  152 IRWKRGEVLGQGAFGTVYLGLNIDTGELMAVKQMATDEVSRRELSSLENEISLLRTLRHVNIVRYIGTELSASALSIFLEYVPGGSLKALIDKFGALEEGVGRSYTRQLLLGLEYLHR 269

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BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot
Match: A0A7S1CQA9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQA9_9STRA)

HSP 1 Score: 157 bits (396), Expect = 4.560e-42
Identity = 81/118 (68.64%), Postives = 93/118 (78.81%), Query Frame = 1

Query:    1 VKWQRGQKLGQGAVGEVFLGLSLETGELMAVKQLRTEEVRRGELASLEHEVRMLRRLRHPNIVRYLGTELQDGILSIFLEYVPGGSIRSFLQRFGALAEPVIRAYTRQLLLGLEYLHR 354
            ++WQRG+ LG GA G V+LGL+L++GELMAVKQL T EV   EL +LEHEV M+ R  H NIVRYLGTE  +  LSIFLEYVPGGSIRS + RFG L E V+R YTRQLLLGLEYLHR
Sbjct:  650 IRWQRGEVLGAGAYGTVYLGLNLDSGELMAVKQLDTSEVSAKELLALEHEVSMMDRFDHENIVRYLGTEHTEETLSIFLEYVPGGSIRSLVNRFGKLDEAVVRVYTRQLLLGLEYLHR 767

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BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot
Match: A0A7S0P6C2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P6C2_CAFRO)

HSP 1 Score: 144 bits (362), Expect = 3.880e-41
Identity = 67/118 (56.78%), Postives = 92/118 (77.97%), Query Frame = 1

Query:    1 VKWQRGQKLGQGAVGEVFLGLSLETGELMAVKQLRTEEVRRGELASLEHEVRMLRRLRHPNIVRYLGTELQDGILSIFLEYVPGGSIRSFLQRFGALAEPVIRAYTRQLLLGLEYLHR 354
            ++W++G++LG GAVG VF GL+++TGELMA+KQ+ + ++   ELA+LE EV +LR  RHPNIVRYLG + +   L +FLEYVPGGS++  L+RFG   E ++R YTR LL+GLEYLHR
Sbjct:   11 IRWRKGERLGAGAVGTVFQGLNVDTGELMAIKQIDSADLSARELAALEQEVSLLRSFRHPNIVRYLGAQREGDTLCVFLEYVPGGSVKRVLERFGGFEEGLVRRYTRHLLVGLEYLHR 128

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BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot
Match: F0YC78_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC78_AURAN)

HSP 1 Score: 142 bits (358), Expect = 1.010e-39
Identity = 69/117 (58.97%), Postives = 91/117 (77.78%), Query Frame = 1

Query:    1 VKWQRGQKLGQGAVGEVFLGLSLETGELMAVKQLRTEEVRRGELASLEHEVRMLRRLRHPNIVRYLGTELQDGILSIFLEYVPGGSIRSFLQRFGALAEPVIRAYTRQLLLGLEYLH 351
            ++WQRG+ +G+GA G V+L L+L+TGELMAVK L   EV   E ++LE+EV M++ L HPNIVRYLG +  +  L+IFLEYVPGGS+RS L +FG L E ++R Y+RQ+LLGLEYLH
Sbjct:    1 IRWQRGEMIGKGAFGSVYLSLNLDTGELMAVKHLDCAEVSSRERSALENEVSMMKGLCHPNIVRYLGVDSSNDALAIFLEYVPGGSLRSLLDKFGKLEEDIVRLYSRQILLGLEYLH 117

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BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot
Match: A0A7S0T1C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T1C3_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.700e-39
Identity = 72/117 (61.54%), Postives = 95/117 (81.20%), Query Frame = 1

Query:    1 VKWQRGQKLGQGAVGEVFLGLSLETGELMAVKQLRTEEVRRGELASLEHEVRMLRRLRHPNIVRYLGTELQDGILSIFLEYVPGGSIRSFLQRFGALAEPVIRAYTRQLLLGLEYLH 351
            +KW++ + LGQGA G V LGL+++TGELMAVKQ++ +EV + EL+ L +E+ +L+ LRH NIVRY+GTE+    LSIFLEY+PGGSI+S L +FGAL E V+R+YTRQLL GLEYLH
Sbjct:   36 IKWKKAEILGQGAFGVVSLGLNIDTGELMAVKQMKIDEVSKKELSILNNEINLLKTLRHNNIVRYIGTEISSTHLSIFLEYIPGGSIKSLLNKFGALDESVVRSYTRQLLYGLEYLH 152

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BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot
Match: A0A7S0P7A6_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P7A6_CAFRO)

HSP 1 Score: 144 bits (362), Expect = 6.370e-39
Identity = 67/118 (56.78%), Postives = 92/118 (77.97%), Query Frame = 1

Query:    1 VKWQRGQKLGQGAVGEVFLGLSLETGELMAVKQLRTEEVRRGELASLEHEVRMLRRLRHPNIVRYLGTELQDGILSIFLEYVPGGSIRSFLQRFGALAEPVIRAYTRQLLLGLEYLHR 354
            ++W++G++LG GAVG VF GL+++TGELMA+KQ+ + ++   ELA+LE EV +LR  RHPNIVRYLG + +   L +FLEYVPGGS++  L+RFG   E ++R YTR LL+GLEYLHR
Sbjct:   11 IRWRKGERLGAGAVGTVFQGLNVDTGELMAIKQIDSADLSARELAALEQEVSLLRSFRHPNIVRYLGAQREGDTLCVFLEYVPGGSVKRVLERFGGFEEGLVRRYTRHLLVGLEYLHR 128

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BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot
Match: A0A7S4E9F3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E9F3_9STRA)

HSP 1 Score: 145 bits (366), Expect = 4.940e-38
Identity = 73/117 (62.39%), Postives = 90/117 (76.92%), Query Frame = 1

Query:    1 VKWQRGQKLGQGAVGEVFLGLSLETGELMAVKQLRTEEVRRGELASLEHEVRMLRRLRHPNIVRYLGTELQDGILSIFLEYVPGGSIRSFLQRFGALAEPVIRAYTRQLLLGLEYLH 351
            ++WQRG+ +G+GA G V+LGL+L+TGELMAVK L  EEV   E  +LE+EVR L+ L HPNIVRYLG + +   L+IFLEYV GGS+RS L RFG L E V+R Y RQ+LLGLEYLH
Sbjct:  269 IRWQRGELVGKGAFGTVYLGLNLDTGELMAVKMLEAEEVSSRERHALENEVRTLKNLGHPNIVRYLGVDSRSDTLAIFLEYVSGGSLRSLLDRFGRLEERVVRLYARQILLGLEYLH 385

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BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot
Match: A0A5A8D7I1_CAFRO (Protein kinase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D7I1_CAFRO)

HSP 1 Score: 144 bits (362), Expect = 1.300e-37
Identity = 67/118 (56.78%), Postives = 92/118 (77.97%), Query Frame = 1

Query:    1 VKWQRGQKLGQGAVGEVFLGLSLETGELMAVKQLRTEEVRRGELASLEHEVRMLRRLRHPNIVRYLGTELQDGILSIFLEYVPGGSIRSFLQRFGALAEPVIRAYTRQLLLGLEYLHR 354
            ++W++G++LG GAVG VF GL+++TGELMA+KQ+ + ++   ELA+LE EV +LR  RHPNIVRYLG + +   L +FLEYVPGGS++  L+RFG   E ++R YTR LL+GLEYLHR
Sbjct:   61 IRWRKGERLGAGAVGTVFQGLNVDTGELMAIKQIDSADLSARELAALEQEVSLLRSFRHPNIVRYLGAQREGDTLCVFLEYVPGGSVKRVLERFGGFEEGLVRRYTRHLLVGLEYLHR 178

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BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot
Match: A0A5A8CNV7_CAFRO (Protein kinase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CNV7_CAFRO)

HSP 1 Score: 144 bits (362), Expect = 1.690e-37
Identity = 67/118 (56.78%), Postives = 92/118 (77.97%), Query Frame = 1

Query:    1 VKWQRGQKLGQGAVGEVFLGLSLETGELMAVKQLRTEEVRRGELASLEHEVRMLRRLRHPNIVRYLGTELQDGILSIFLEYVPGGSIRSFLQRFGALAEPVIRAYTRQLLLGLEYLHR 354
            ++W++G++LG GAVG VF GL+++TGELMA+KQ+ + ++   ELA+LE EV +LR  RHPNIVRYLG + +   L +FLEYVPGGS++  L+RFG   E ++R YTR LL+GLEYLHR
Sbjct:  370 IRWRKGERLGAGAVGTVFQGLNVDTGELMAIKQIDSADLSARELAALEQEVSLLRSFRHPNIVRYLGAQREGDTLCVFLEYVPGGSVKRVLERFGGFEEGLVRRYTRHLLVGLEYLHR 487

[Close]

BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot
Match: A0A5A8D8T0_CAFRO (Protein kinase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D8T0_CAFRO)

HSP 1 Score: 144 bits (362), Expect = 1.710e-37
Identity = 67/118 (56.78%), Postives = 92/118 (77.97%), Query Frame = 1

Query:    1 VKWQRGQKLGQGAVGEVFLGLSLETGELMAVKQLRTEEVRRGELASLEHEVRMLRRLRHPNIVRYLGTELQDGILSIFLEYVPGGSIRSFLQRFGALAEPVIRAYTRQLLLGLEYLHR 354
            ++W++G++LG GAVG VF GL+++TGELMA+KQ+ + ++   ELA+LE EV +LR  RHPNIVRYLG + +   L +FLEYVPGGS++  L+RFG   E ++R YTR LL+GLEYLHR
Sbjct:   61 IRWRKGERLGAGAVGTVFQGLNVDTGELMAIKQIDSADLSARELAALEQEVSLLRSFRHPNIVRYLGAQREGDTLCVFLEYVPGGSVKRVLERFGGFEEGLVRRYTRHLLVGLEYLHR 178

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig80236.18803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A482RS88_9ARCH	6.870e-47	66.95	Protein kinase domain-containing protein (Fragment...	[more]
A0A7S1CQA9_9STRA	4.560e-42	68.64	Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20...	[more]
A0A7S0P6C2_CAFRO	3.880e-41	56.78	Hypothetical protein (Fragment) n=1 Tax=Cafeteria ...	[more]
F0YC78_AURAN	1.010e-39	58.97	Protein kinase domain-containing protein (Fragment...	[more]
A0A7S0T1C3_9STRA	3.700e-39	61.54	Hypothetical protein (Fragment) n=1 Tax=Chromulina...	[more]
A0A7S0P7A6_CAFRO	6.370e-39	56.78	Hypothetical protein (Fragment) n=1 Tax=Cafeteria ...	[more]
A0A7S4E9F3_9STRA	4.940e-38	62.39	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A5A8D7I1_CAFRO	1.300e-37	56.78	Protein kinase domain-containing protein n=1 Tax=C...	[more]
A0A5A8CNV7_CAFRO	1.690e-37	56.78	Protein kinase domain-containing protein n=1 Tax=C...	[more]
A0A5A8D8T0_CAFRO	1.710e-37	56.78	Protein kinase domain-containing protein n=1 Tax=C...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig80236	contig	M-pyrifera_M_contig80236:3..356 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	145.6
Seed ortholog evalue	1.5e-32
Seed eggNOG ortholog	44056.XP_009037802.1
Hectar predicted targeting category	other localisation
EggNOG free text desc.	MAP kinase kinase kinase activity
EggNOG OGs	KOG0198@1,KOG0198@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	354
Cds size	354
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816707.8755093-CDS-M-pyrifera_M_contig80236:2..356	1622816707.8755093-CDS-M-pyrifera_M_contig80236:2..356	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig80236 3..356 -
1692278132.4140258-CDS-M-pyrifera_M_contig80236:2..356	1692278132.4140258-CDS-M-pyrifera_M_contig80236:2..356	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig80236 3..356 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig80236.18803.1	prot_M-pyrifera_M_contig80236.18803.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig80236 3..356 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig80236:3..356-
coding sequence from alignment at M-pyrifera_M_contig80236:3..356-

protein sequence of mRNA_M-pyrifera_M_contig80236.18803.1

>prot_M-pyrifera_M_contig80236.18803.1 ID=prot_M-pyrifera_M_contig80236.18803.1|Name=mRNA_M-pyrifera_M_contig80236.18803.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
VKWQRGQKLGQGAVGEVFLGLSLETGELMAVKQLRTEEVRRGELASLEHE
VRMLRRLRHPNIVRYLGTELQDGILSIFLEYVPGGSIRSFLQRFGALAEP
VIRAYTRQLLLGLEYLHR

mRNA from alignment at M-pyrifera_M_contig80236:3..356-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig80236.18803.1 ID=mRNA_M-pyrifera_M_contig80236.18803.1|Name=mRNA_M-pyrifera_M_contig80236.18803.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig80236:3..356- (Macrocystis pyrifera P11B4 male)
GTCAAGTGGCAGAGAGGACAAAAGTTGGGACAAGGAGCTGTTGGAGAAGT
GTTCTTGGGGTTGTCTTTGGAAACGGGAGAGTTGATGGCTGTAAAGCAGT
TGAGGACGGAGGAAGTTCGAAGAGGAGAGTTGGCAAGTTTGGAGCATGAA
GTGAGGATGCTGAGGAGGTTGAGACACCCGAATATTGTGAGGTATTTGGG
CACAGAATTGCAAGATGGAATTTTGTCAATTTTCCTGGAATATGTCCCAG
GTGGATCGATTCGATCCTTCTTACAACGTTTTGGAGCACTTGCTGAGCCA
GTGATTCGAGCGTATACAAGACAACTGTTGCTGGGCTTGGAGTATTTACA
TCGG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig80236:3..356-

>mRNA_M-pyrifera_M_contig80236.18803.1 ID=mRNA_M-pyrifera_M_contig80236.18803.1|Name=mRNA_M-pyrifera_M_contig80236.18803.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig80236:3..356- (Macrocystis pyrifera P11B4 male)
GTCAAGTGGCAGAGAGGACAAAAGTTGGGACAAGGAGCTGTTGGAGAAGT
GTTCTTGGGGTTGTCTTTGGAAACGGGAGAGTTGATGGCTGTAAAGCAGT
TGAGGACGGAGGAAGTTCGAAGAGGAGAGTTGGCAAGTTTGGAGCATGAA
GTGAGGATGCTGAGGAGGTTGAGACACCCGAATATTGTGAGGTATTTGGG
CACAGAATTGCAAGATGGAATTTTGTCAATTTTCCTGGAATATGTCCCAG
GTGGATCGATTCGATCCTTCTTACAACGTTTTGGAGCACTTGCTGAGCCA
GTGATTCGAGCGTATACAAGACAACTGTTGCTGGGCTTGGAGTATTTACA
TCGGGTCAAGTGGCAGAGAGGACAAAAGTTGGGACAAGGAGCTGTTGGAG
AAGTGTTCTTGGGGTTGTCTTTGGAAACGGGAGAGTTGATGGCTGTAAAG
CAGTTGAGGACGGAGGAAGTTCGAAGAGGAGAGTTGGCAAGTTTGGAGCA
TGAAGTGAGGATGCTGAGGAGGTTGAGACACCCGAATATTGTGAGGTATT
TGGGCACAGAATTGCAAGATGGAATTTTGTCAATTTTCCTGGAATATGTC
CCAGGTGGATCGATTCGATCCTTCTTACAACGTTTTGGAGCACTTGCTGA
GCCAGTGATTCGAGCGTATACAAGACAACTGTTGCTGGGCTTGGAGTATT
TACATCGG