mRNA_M-pyrifera_M_contig80222.18797.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80222.18797.1
Unique NamemRNA_M-pyrifera_M_contig80222.18797.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80222.18797.1 vs. uniprot
Match: A0A832E5V7_9DELT (Uncharacterized protein n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A832E5V7_9DELT)

HSP 1 Score: 59.7 bits (143), Expect = 1.080e-6
Identity = 65/239 (27.20%), Postives = 100/239 (41.84%), Query Frame = 1 
Query:   52 DCCDSPEDLCDDPFLVNPGAFEIAANDQQDSCRGTSRNNDADGHIGGCDRNFVFANDFQLVGPTIPSEQTNEAVWA--LDLCEFK----EDDDDPSWGFDEQQTMIFSLANGTRNGYDIGIVGPATTQAAVVDHYGGIVPARGDFMLAMSSGTARDEATGGHQSAAGATTGNTIVNLPASFLDSGASTFVEDCGGLPYAVGV---------DSIRAHFRMRQPTNMHAFSFQALYMDFE 723
            DCCD    +C DP LVNPGA+E A N+  D+C G     + D     CD +             +PS+  +   +A  +DLC+F     +D +D  WG    +   F+LA+G  +        P   Q ++  ++G  +  +    +A+ S      +   +   AG  TG   V+L  S L + A     + G LP   G          D I    R+R PTN  +FS +  +   E
Sbjct:  194 DCCDVAGGVCQDPELVNPGAYEYAGNEVDDNCNG-----EVDEVAATCDDD-------------LPSDAADPLDYARSIDLCQFTTESPKDPEDRVWGVISAE---FTLADGKGS--------PKAVQRSIRPNFGNSIAKQAGSRMALFSSGHAAASKDKNPDYAGFQTG---VDLKTSSL-APADWVAANGGKLPNPPGCLAPGELTANDPIMLTLRVRAPTNAKSFSVKMFFFSAE 399
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80222.18797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A832E5V7_9DELT1.080e-627.20Uncharacterized protein n=1 Tax=Nannocystis exeden... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80222contigM-pyrifera_M_contig80222:135..857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.8
Seed ortholog evalue8e-09
Seed eggNOG ortholog448385.sce2445
Preferred nameflgK
KEGG koko:K02396
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Flagellar basal body rod
EggNOG OGsCOG4786@1,COG4786@2
COG Functional cat.N
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035
Exons1
Model size723
Cds size723
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816707.6697903-CDS-M-pyrifera_M_contig80222:134..8571622816707.6697903-CDS-M-pyrifera_M_contig80222:134..857Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80222 135..857 -
1692278132.3291347-CDS-M-pyrifera_M_contig80222:134..8571692278132.3291347-CDS-M-pyrifera_M_contig80222:134..857Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80222 135..857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80222.18797.1prot_M-pyrifera_M_contig80222.18797.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80222 135..857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80222.18797.1

>prot_M-pyrifera_M_contig80222.18797.1 ID=prot_M-pyrifera_M_contig80222.18797.1|Name=mRNA_M-pyrifera_M_contig80222.18797.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=241bp
DLDGDGYYSDAPLIEWRDCCDSPEDLCDDPFLVNPGAFEIAANDQQDSCR
GTSRNNDADGHIGGCDRNFVFANDFQLVGPTIPSEQTNEAVWALDLCEFK
EDDDDPSWGFDEQQTMIFSLANGTRNGYDIGIVGPATTQAAVVDHYGGIV
PARGDFMLAMSSGTARDEATGGHQSAAGATTGNTIVNLPASFLDSGASTF
VEDCGGLPYAVGVDSIRAHFRMRQPTNMHAFSFQALYMDFE
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mRNA from alignment at M-pyrifera_M_contig80222:135..857-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80222.18797.1 ID=mRNA_M-pyrifera_M_contig80222.18797.1|Name=mRNA_M-pyrifera_M_contig80222.18797.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=723bp|location=Sequence derived from alignment at M-pyrifera_M_contig80222:135..857- (Macrocystis pyrifera P11B4 male)
GACCTAGACGGCGACGGCTACTACTCTGATGCACCGCTGATTGAGTGGCG
TGACTGCTGTGACTCGCCTGAGGACCTTTGTGACGACCCCTTCCTTGTGA
ACCCTGGCGCCTTCGAGATCGCGGCCAACGACCAGCAGGACAGCTGCCGC
GGCACCTCGCGCAACAACGACGCCGACGGCCACATTGGTGGCTGCGACCG
CAACTTTGTCTTCGCCAACGACTTCCAGCTGGTGGGCCCGACGATTCCGT
CCGAGCAGACCAACGAGGCCGTGTGGGCCCTCGACCTCTGCGAGTTCAAG
GAGGACGACGACGACCCGAGCTGGGGCTTCGACGAGCAACAGACGATGAT
CTTCTCGCTGGCCAACGGCACGCGTAACGGCTACGACATTGGCATCGTGG
GCCCCGCTACAACACAGGCGGCAGTGGTGGATCACTACGGCGGCATCGTG
CCTGCACGTGGCGACTTCATGCTAGCCATGTCGTCGGGCACTGCTCGCGA
CGAGGCCACGGGTGGCCACCAGTCTGCAGCCGGCGCCACCACCGGCAACA
CGATCGTCAACCTGCCGGCCAGCTTCCTGGATAGCGGCGCCTCGACGTTC
GTCGAGGACTGTGGCGGCCTCCCTTACGCGGTGGGCGTGGACTCGATCCG
CGCCCACTTCCGCATGCGGCAGCCGACCAACATGCACGCCTTCTCCTTCC
AGGCGCTGTACATGGACTTTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80222:135..857-

>mRNA_M-pyrifera_M_contig80222.18797.1 ID=mRNA_M-pyrifera_M_contig80222.18797.1|Name=mRNA_M-pyrifera_M_contig80222.18797.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1446bp|location=Sequence derived from alignment at M-pyrifera_M_contig80222:135..857- (Macrocystis pyrifera P11B4 male)
GACCTAGACGGCGACGGCTACTACTCTGATGCACCGCTGATTGAGTGGCG
TGACTGCTGTGACTCGCCTGAGGACCTTTGTGACGACCCCTTCCTTGTGA
ACCCTGGCGCCTTCGAGATCGCGGCCAACGACCAGCAGGACAGCTGCCGC
GGCACCTCGCGCAACAACGACGCCGACGGCCACATTGGTGGCTGCGACCG
CAACTTTGTCTTCGCCAACGACTTCCAGCTGGTGGGCCCGACGATTCCGT
CCGAGCAGACCAACGAGGCCGTGTGGGCCCTCGACCTCTGCGAGTTCAAG
GAGGACGACGACGACCCGAGCTGGGGCTTCGACGAGCAACAGACGATGAT
CTTCTCGCTGGCCAACGGCACGCGTAACGGCTACGACATTGGCATCGTGG
GCCCCGCTACAACACAGGCGGCAGTGGTGGATCACTACGGCGGCATCGTG
CCTGCACGTGGCGACTTCATGCTAGCCATGTCGTCGGGCACTGCTCGCGA
CGAGGCCACGGGTGGCCACCAGTCTGCAGCCGGCGCCACCACCGGCAACA
CGATCGTCAACCTGCCGGCCAGCTTCCTGGATAGCGGCGCCTCGACGTTC
GTCGAGGACTGTGGCGGCCTCCCTTACGCGGTGGGCGTGGACTCGATCCG
CGCCCACTTCCGCATGCGGCAGCCGACCAACATGCACGCCTTCTCCTTCC
AGGCGCTGTACATGGACTTTGAGGACCTAGACGGCGACGGCTACTACTCT
GATGCACCGCTGATTGAGTGGCGTGACTGCTGTGACTCGCCTGAGGACCT
TTGTGACGACCCCTTCCTTGTGAACCCTGGCGCCTTCGAGATCGCGGCCA
ACGACCAGCAGGACAGCTGCCGCGGCACCTCGCGCAACAACGACGCCGAC
GGCCACATTGGTGGCTGCGACCGCAACTTTGTCTTCGCCAACGACTTCCA
GCTGGTGGGCCCGACGATTCCGTCCGAGCAGACCAACGAGGCCGTGTGGG
CCCTCGACCTCTGCGAGTTCAAGGAGGACGACGACGACCCGAGCTGGGGC
TTCGACGAGCAACAGACGATGATCTTCTCGCTGGCCAACGGCACGCGTAA
CGGCTACGACATTGGCATCGTGGGCCCCGCTACAACACAGGCGGCAGTGG
TGGATCACTACGGCGGCATCGTGCCTGCACGTGGCGACTTCATGCTAGCC
ATGTCGTCGGGCACTGCTCGCGACGAGGCCACGGGTGGCCACCAGTCTGC
AGCCGGCGCCACCACCGGCAACACGATCGTCAACCTGCCGGCCAGCTTCC
TGGATAGCGGCGCCTCGACGTTCGTCGAGGACTGTGGCGGCCTCCCTTAC
GCGGTGGGCGTGGACTCGATCCGCGCCCACTTCCGCATGCGGCAGCCGAC
CAACATGCACGCCTTCTCCTTCCAGGCGCTGTACATGGACTTTGAG
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