mRNA_M-pyrifera_M_contig80220.18796.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A7Y2DRT9_9ACTN (CpaF family protein n=3 Tax=Acidimicrobiia TaxID=84992 RepID=A0A7Y2DRT9_9ACTN) HSP 1 Score: 140 bits (352), Expect = 5.710e-38 Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 1 Query: 1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216 RLRDGSRRITHI+EVAGMEG+VVTLQDVFLFDF+AGVDEQGRFKG LK TGVRPKFAQKLADHGIRLGPEMF Sbjct: 380 RLRDGSRRITHITEVAGMEGDVVTLQDVFLFDFSAGVDEQGRFKGQLKSTGVRPKFAQKLADHGIRLGPEMF 451
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A7X6NZD7_9ACTN (CpaF family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6NZD7_9ACTN) HSP 1 Score: 130 bits (326), Expect = 1.060e-34 Identity = 59/72 (81.94%), Postives = 67/72 (93.06%), Query Frame = 1 Query: 1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216 RLRDGSRR+THI+EV GMEG+V+TLQDVFLFDFAAGVDE GRF+G LKPTGVRP+F +KLAD GIRLGPE+F Sbjct: 298 RLRDGSRRVTHITEVQGMEGDVITLQDVFLFDFAAGVDENGRFRGQLKPTGVRPRFVEKLADQGIRLGPEVF 369
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A359F5D0_9ACTN (Pilus assembly protein CpaF (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A359F5D0_9ACTN) HSP 1 Score: 121 bits (304), Expect = 5.770e-34 Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1 Query: 1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216 RLRDGSRR+THI+EV GMEG+V+TLQDVFLFDF GVDE G+F G LK TGVRPKF +KLAD GIRLGPE+F Sbjct: 53 RLRDGSRRVTHITEVQGMEGDVITLQDVFLFDFGMGVDEHGKFLGHLKATGVRPKFTEKLADQGIRLGPEVF 124
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A538D6Q1_9ACTN (CpaF family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538D6Q1_9ACTN) HSP 1 Score: 126 bits (317), Expect = 6.140e-33 Identity = 58/72 (80.56%), Postives = 67/72 (93.06%), Query Frame = 1 Query: 1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216 RLRDGSRR+THI+EV GMEGE++TLQDVFLFD+ AGVDE GR+KG+LKPTGVRPKFA+KLAD GIRL PE+F Sbjct: 371 RLRDGSRRVTHITEVQGMEGEIITLQDVFLFDWHAGVDENGRYKGTLKPTGVRPKFAEKLADQGIRLRPEVF 442
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A3M2G830_ACTSX (CpaF family protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G830_ACTSX) HSP 1 Score: 126 bits (316), Expect = 1.170e-32 Identity = 55/72 (76.39%), Postives = 68/72 (94.44%), Query Frame = 1 Query: 1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216 RLRDGSRR+THI+EV GMEG+V+TLQD+FLFDF+AGVD+QGR++G+LKPTG+RPKFA+KL GIRLGPE+F Sbjct: 405 RLRDGSRRVTHITEVQGMEGDVITLQDIFLFDFSAGVDDQGRYRGTLKPTGIRPKFAEKLLTEGIRLGPEVF 476
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A7W0LNQ8_9ACTN (CpaF family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0LNQ8_9ACTN) HSP 1 Score: 124 bits (311), Expect = 4.180e-32 Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 1 Query: 1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216 RLRDG+RRITHI+EV GMEG+V+TLQDVFLFDF GVDE G FKG LK TGVRPKFA+KLAD+G+RLGPE+F Sbjct: 371 RLRDGTRRITHITEVQGMEGDVITLQDVFLFDFGMGVDEHGSFKGHLKATGVRPKFAEKLADYGVRLGPEVF 442
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A6I3A1Y3_9ACTN (CpaF family protein n=2 Tax=root TaxID=1 RepID=A0A6I3A1Y3_9ACTN) HSP 1 Score: 124 bits (310), Expect = 6.170e-32 Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1 Query: 1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216 RLRDGSRRITHI+EV GMEGE++TLQDVFLFDFAAGVDE G+++G L+ GVRPKF +KLAD GIRLGPE+F Sbjct: 371 RLRDGSRRITHITEVQGMEGEIITLQDVFLFDFAAGVDENGKYRGQLRAAGVRPKFVEKLADQGIRLGPEVF 442
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: UPI001D120824 (CpaF family protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D120824) HSP 1 Score: 124 bits (311), Expect = 6.670e-32 Identity = 56/72 (77.78%), Postives = 66/72 (91.67%), Query Frame = 1 Query: 1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216 RLRDG+RR+THI+EV GMEG+V+TLQDVFLFDF AGVDE GR++G L+ TGVRPKFA+KLAD GIRLGPE+F Sbjct: 414 RLRDGTRRVTHITEVQGMEGDVITLQDVFLFDFGAGVDESGRYRGQLQATGVRPKFAEKLADQGIRLGPEVF 485
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A7X7D7W7_9ACTN (CpaF family protein n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A7X7D7W7_9ACTN) HSP 1 Score: 122 bits (305), Expect = 1.980e-31 Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1 Query: 1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216 RLRDG+RRITHI+E+ GMEG+V+T QDVFLFDF GVDE GRF+G +K TGVRPKFA+KLAD GIRLGPE+F Sbjct: 334 RLRDGTRRITHITEIQGMEGDVITTQDVFLFDFGMGVDEHGRFRGHMKATGVRPKFAEKLADQGIRLGPEVF 405
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A5Q2RNK8_9ACTN (CpaF family protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RNK8_9ACTN) HSP 1 Score: 122 bits (306), Expect = 2.190e-31 Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1 Query: 1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216 RLRDG+RRITHI+EV GMEG+V+TLQD+FLFD+ GVDE GRF+G LK TGVRPKFA+KLAD GIRLGPE+F Sbjct: 370 RLRDGTRRITHITEVQGMEGDVITLQDIFLFDYGMGVDEHGRFRGHLKATGVRPKFAEKLADLGIRLGPEVF 441 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig80220.18796.1 >prot_M-pyrifera_M_contig80220.18796.1 ID=prot_M-pyrifera_M_contig80220.18796.1|Name=mRNA_M-pyrifera_M_contig80220.18796.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTback to top mRNA from alignment at M-pyrifera_M_contig80220:732..947- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig80220.18796.1 ID=mRNA_M-pyrifera_M_contig80220.18796.1|Name=mRNA_M-pyrifera_M_contig80220.18796.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig80220:732..947- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig80220:732..947- >mRNA_M-pyrifera_M_contig80220.18796.1 ID=mRNA_M-pyrifera_M_contig80220.18796.1|Name=mRNA_M-pyrifera_M_contig80220.18796.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig80220:732..947- (Macrocystis pyrifera P11B4 male)back to top |