mRNA_M-pyrifera_M_contig80220.18796.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80220.18796.1
Unique NamemRNA_M-pyrifera_M_contig80220.18796.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A7Y2DRT9_9ACTN (CpaF family protein n=3 Tax=Acidimicrobiia TaxID=84992 RepID=A0A7Y2DRT9_9ACTN)

HSP 1 Score: 140 bits (352), Expect = 5.710e-38
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 1
Query:    1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216
            RLRDGSRRITHI+EVAGMEG+VVTLQDVFLFDF+AGVDEQGRFKG LK TGVRPKFAQKLADHGIRLGPEMF
Sbjct:  380 RLRDGSRRITHITEVAGMEGDVVTLQDVFLFDFSAGVDEQGRFKGQLKSTGVRPKFAQKLADHGIRLGPEMF 451          
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A7X6NZD7_9ACTN (CpaF family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6NZD7_9ACTN)

HSP 1 Score: 130 bits (326), Expect = 1.060e-34
Identity = 59/72 (81.94%), Postives = 67/72 (93.06%), Query Frame = 1
Query:    1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216
            RLRDGSRR+THI+EV GMEG+V+TLQDVFLFDFAAGVDE GRF+G LKPTGVRP+F +KLAD GIRLGPE+F
Sbjct:  298 RLRDGSRRVTHITEVQGMEGDVITLQDVFLFDFAAGVDENGRFRGQLKPTGVRPRFVEKLADQGIRLGPEVF 369          
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A359F5D0_9ACTN (Pilus assembly protein CpaF (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A359F5D0_9ACTN)

HSP 1 Score: 121 bits (304), Expect = 5.770e-34
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216
            RLRDGSRR+THI+EV GMEG+V+TLQDVFLFDF  GVDE G+F G LK TGVRPKF +KLAD GIRLGPE+F
Sbjct:   53 RLRDGSRRVTHITEVQGMEGDVITLQDVFLFDFGMGVDEHGKFLGHLKATGVRPKFTEKLADQGIRLGPEVF 124          
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A538D6Q1_9ACTN (CpaF family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538D6Q1_9ACTN)

HSP 1 Score: 126 bits (317), Expect = 6.140e-33
Identity = 58/72 (80.56%), Postives = 67/72 (93.06%), Query Frame = 1
Query:    1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216
            RLRDGSRR+THI+EV GMEGE++TLQDVFLFD+ AGVDE GR+KG+LKPTGVRPKFA+KLAD GIRL PE+F
Sbjct:  371 RLRDGSRRVTHITEVQGMEGEIITLQDVFLFDWHAGVDENGRYKGTLKPTGVRPKFAEKLADQGIRLRPEVF 442          
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A3M2G830_ACTSX (CpaF family protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G830_ACTSX)

HSP 1 Score: 126 bits (316), Expect = 1.170e-32
Identity = 55/72 (76.39%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216
            RLRDGSRR+THI+EV GMEG+V+TLQD+FLFDF+AGVD+QGR++G+LKPTG+RPKFA+KL   GIRLGPE+F
Sbjct:  405 RLRDGSRRVTHITEVQGMEGDVITLQDIFLFDFSAGVDDQGRYRGTLKPTGIRPKFAEKLLTEGIRLGPEVF 476          
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A7W0LNQ8_9ACTN (CpaF family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0LNQ8_9ACTN)

HSP 1 Score: 124 bits (311), Expect = 4.180e-32
Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216
            RLRDG+RRITHI+EV GMEG+V+TLQDVFLFDF  GVDE G FKG LK TGVRPKFA+KLAD+G+RLGPE+F
Sbjct:  371 RLRDGTRRITHITEVQGMEGDVITLQDVFLFDFGMGVDEHGSFKGHLKATGVRPKFAEKLADYGVRLGPEVF 442          
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A6I3A1Y3_9ACTN (CpaF family protein n=2 Tax=root TaxID=1 RepID=A0A6I3A1Y3_9ACTN)

HSP 1 Score: 124 bits (310), Expect = 6.170e-32
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216
            RLRDGSRRITHI+EV GMEGE++TLQDVFLFDFAAGVDE G+++G L+  GVRPKF +KLAD GIRLGPE+F
Sbjct:  371 RLRDGSRRITHITEVQGMEGEIITLQDVFLFDFAAGVDENGKYRGQLRAAGVRPKFVEKLADQGIRLGPEVF 442          
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: UPI001D120824 (CpaF family protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D120824)

HSP 1 Score: 124 bits (311), Expect = 6.670e-32
Identity = 56/72 (77.78%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216
            RLRDG+RR+THI+EV GMEG+V+TLQDVFLFDF AGVDE GR++G L+ TGVRPKFA+KLAD GIRLGPE+F
Sbjct:  414 RLRDGTRRVTHITEVQGMEGDVITLQDVFLFDFGAGVDESGRYRGQLQATGVRPKFAEKLADQGIRLGPEVF 485          
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A7X7D7W7_9ACTN (CpaF family protein n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A7X7D7W7_9ACTN)

HSP 1 Score: 122 bits (305), Expect = 1.980e-31
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216
            RLRDG+RRITHI+E+ GMEG+V+T QDVFLFDF  GVDE GRF+G +K TGVRPKFA+KLAD GIRLGPE+F
Sbjct:  334 RLRDGTRRITHITEIQGMEGDVITTQDVFLFDFGMGVDEHGRFRGHMKATGVRPKFAEKLADQGIRLGPEVF 405          
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Match: A0A5Q2RNK8_9ACTN (CpaF family protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RNK8_9ACTN)

HSP 1 Score: 122 bits (306), Expect = 2.190e-31
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPTGVRPKFAQKLADHGIRLGPEMF 216
            RLRDG+RRITHI+EV GMEG+V+TLQD+FLFD+  GVDE GRF+G LK TGVRPKFA+KLAD GIRLGPE+F
Sbjct:  370 RLRDGTRRITHITEVQGMEGDVITLQDIFLFDYGMGVDEHGRFRGHLKATGVRPKFAEKLADLGIRLGPEVF 441          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80220.18796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2DRT9_9ACTN5.710e-3893.06CpaF family protein n=3 Tax=Acidimicrobiia TaxID=8... [more]
A0A7X6NZD7_9ACTN1.060e-3481.94CpaF family protein n=1 Tax=Actinomycetia bacteriu... [more]
A0A359F5D0_9ACTN5.770e-3477.78Pilus assembly protein CpaF (Fragment) n=1 Tax=Aci... [more]
A0A538D6Q1_9ACTN6.140e-3380.56CpaF family protein n=1 Tax=Actinomycetia bacteriu... [more]
A0A3M2G830_ACTSX1.170e-3276.39CpaF family protein n=1 Tax=Actinomyces sp. TaxID=... [more]
A0A7W0LNQ8_9ACTN4.180e-3279.17CpaF family protein n=1 Tax=Acidimicrobiia bacteri... [more]
A0A6I3A1Y3_9ACTN6.170e-3277.78CpaF family protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
UPI001D1208246.670e-3277.78CpaF family protein n=1 Tax=Aquihabitans sp. Kera ... [more]
A0A7X7D7W7_9ACTN1.980e-3176.39CpaF family protein n=2 Tax=Acidimicrobiales TaxID... [more]
A0A5Q2RNK8_9ACTN2.190e-3177.78CpaF family protein n=1 Tax=Actinomarinicola tropi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80220contigM-pyrifera_M_contig80220:732..947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score110.5
Seed ortholog evalue3.2e-22
Seed eggNOG ortholog68170.KL590518_gene96
Preferred namecpaF
KEGG koko:K02283
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Type ii secretion system protein e
EggNOG OGs2GKKJ@201174,COG4962@1,COG4962@2
COG Functional cat.U
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02035,ko02044
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816707.6360788-CDS-M-pyrifera_M_contig80220:731..9471622816707.6360788-CDS-M-pyrifera_M_contig80220:731..947Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80220 732..947 -
1692278132.316873-CDS-M-pyrifera_M_contig80220:731..9471692278132.316873-CDS-M-pyrifera_M_contig80220:731..947Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80220 732..947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80220.18796.1prot_M-pyrifera_M_contig80220.18796.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80220 732..947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80220.18796.1

>prot_M-pyrifera_M_contig80220.18796.1 ID=prot_M-pyrifera_M_contig80220.18796.1|Name=mRNA_M-pyrifera_M_contig80220.18796.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
RLRDGSRRITHISEVAGMEGEVVTLQDVFLFDFAAGVDEQGRFKGSLKPT
GVRPKFAQKLADHGIRLGPEMF
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mRNA from alignment at M-pyrifera_M_contig80220:732..947-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80220.18796.1 ID=mRNA_M-pyrifera_M_contig80220.18796.1|Name=mRNA_M-pyrifera_M_contig80220.18796.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig80220:732..947- (Macrocystis pyrifera P11B4 male)
CGCCTCCGAGACGGCTCCCGCCGAATCACCCACATCTCCGAGGTGGCAGG CATGGAAGGCGAAGTCGTGACCCTGCAGGACGTCTTCCTGTTCGACTTCG CTGCCGGTGTCGACGAGCAGGGCCGCTTCAAGGGTTCGCTGAAGCCAACG GGCGTGCGACCGAAGTTCGCTCAGAAGCTCGCCGATCACGGCATTCGACT CGGCCCGGAGATGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80220:732..947-

>mRNA_M-pyrifera_M_contig80220.18796.1 ID=mRNA_M-pyrifera_M_contig80220.18796.1|Name=mRNA_M-pyrifera_M_contig80220.18796.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig80220:732..947- (Macrocystis pyrifera P11B4 male)
CGCCTCCGAGACGGCTCCCGCCGAATCACCCACATCTCCGAGGTGGCAGG
CATGGAAGGCGAAGTCGTGACCCTGCAGGACGTCTTCCTGTTCGACTTCG
CTGCCGGTGTCGACGAGCAGGGCCGCTTCAAGGGTTCGCTGAAGCCAACG
GGCGTGCGACCGAAGTTCGCTCAGAAGCTCGCCGATCACGGCATTCGACT
CGGCCCGGAGATGTTCCGCCTCCGAGACGGCTCCCGCCGAATCACCCACA
TCTCCGAGGTGGCAGGCATGGAAGGCGAAGTCGTGACCCTGCAGGACGTC
TTCCTGTTCGACTTCGCTGCCGGTGTCGACGAGCAGGGCCGCTTCAAGGG
TTCGCTGAAGCCAACGGGCGTGCGACCGAAGTTCGCTCAGAAGCTCGCCG
ATCACGGCATTCGACTCGGCCCGGAGATGTTC
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