mRNA_M-pyrifera_M_contig80137.18782.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80137.18782.1
Unique NamemRNA_M-pyrifera_M_contig80137.18782.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80137.18782.1 vs. uniprot
Match: A0A0D8XYY9_DICVI (Uncharacterized protein n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8XYY9_DICVI)

HSP 1 Score: 90.9 bits (224), Expect = 3.160e-21
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 ELRKRFKEGIEYNMKVVVRGARGVGKTSLLQRLSVQPVSGAYEPTDQIQTRSIEWDYKTESVVVKVDVWDV 213
            EL+KRF +GI+YNMK+V+RG R VGK+ LL+RL  QP    Y PT++IQ  S++W+YKT   +VKVDVWD+
Sbjct:   31 ELQKRFSKGIQYNMKIVIRGDRNVGKSCLLRRLQGQPFLEDYIPTEEIQVASVDWNYKTTDDIVKVDVWDI 101
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BLAST of mRNA_M-pyrifera_M_contig80137.18782.1 vs. uniprot
Match: A0A1I8CH07_9BILA (Uncharacterized protein n=1 Tax=Rhabditophanes sp. KR3021 TaxID=114890 RepID=A0A1I8CH07_9BILA)

HSP 1 Score: 93.2 bits (230), Expect = 1.200e-20
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    1 ELRKRFKEGIEYNMKVVVRGARGVGKTSLLQRLSVQPVSGAYEPTDQIQTRSIEWDYKTESVVVKVDVWDV 213
            +L+KRFK G+ YNMK+V+RG R VGKTSL QRL   P +  Y  TDQIQ   IEW+YK    +VKVDVWDV
Sbjct:    4 DLQKRFKNGVNYNMKIVIRGDRNVGKTSLFQRLQGHPFTSTYTSTDQIQVTHIEWNYKNRDHIVKVDVWDV 74
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BLAST of mRNA_M-pyrifera_M_contig80137.18782.1 vs. uniprot
Match: J9F1V1_WUCBA (Uncharacterized protein n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=J9F1V1_WUCBA)

HSP 1 Score: 85.5 bits (210), Expect = 8.130e-19
Identity = 38/71 (53.52%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 ELRKRFKEGIEYNMKVVVRGARGVGKTSLLQRLSVQPVSGAYEPTDQIQTRSIEWDYKTESVVVKVDVWDV 213
            EL++++ +G++YNMK+V+RG R VGKTSL +RL   P    Y PT++IQ  SI+W+Y+T   +VKVDVWDV
Sbjct:   36 ELQRKYAKGVQYNMKIVIRGDRNVGKTSLWRRLQGLPFLDDYTPTNEIQVASIQWNYRTTDDIVKVDVWDV 106
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BLAST of mRNA_M-pyrifera_M_contig80137.18782.1 vs. uniprot
Match: E5S4U6_TRISP (Rab-like protein 6 n=2 Tax=Trichinella TaxID=6333 RepID=E5S4U6_TRISP)

HSP 1 Score: 87.4 bits (215), Expect = 1.180e-18
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    4 LRKRFKEGIEYNMKVVVRGARGVGKTSLLQRLSVQPVSGAYEPTDQIQTRSIEWDYKTESVVVKVDVWDV 213
            LR +FK G+ YNMK+++RG R VGK+ LL+RL   P  G Y PT++IQ  S+EW YKT   V+KVD+WDV
Sbjct:   34 LRMKFKRGVNYNMKILLRGDRNVGKSCLLRRLQGGPFIGQYIPTEEIQVASVEWSYKTRDDVIKVDIWDV 103
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BLAST of mRNA_M-pyrifera_M_contig80137.18782.1 vs. uniprot
Match: A0A0V1IBV0_TRIPS (Rab-like protein 6 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1IBV0_TRIPS)

HSP 1 Score: 87.4 bits (215), Expect = 1.420e-18
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    4 LRKRFKEGIEYNMKVVVRGARGVGKTSLLQRLSVQPVSGAYEPTDQIQTRSIEWDYKTESVVVKVDVWDV 213
            LR +FK G+ YNMK+++RG R VGK+ LL+RL   P  G Y PT++IQ  S+EW YKT   V+KVD+WDV
Sbjct:   34 LRMKFKRGVNYNMKILLRGDRNVGKSCLLRRLQGGPFIGQYIPTEEIQVASVEWSYKTRDDVIKVDIWDV 103
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BLAST of mRNA_M-pyrifera_M_contig80137.18782.1 vs. uniprot
Match: A0A0V1FH68_TRIPS (Rab-like protein 6 n=8 Tax=Trichinella TaxID=6333 RepID=A0A0V1FH68_TRIPS)

HSP 1 Score: 87.4 bits (215), Expect = 1.470e-18
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    4 LRKRFKEGIEYNMKVVVRGARGVGKTSLLQRLSVQPVSGAYEPTDQIQTRSIEWDYKTESVVVKVDVWDV 213
            LR +FK G+ YNMK+++RG R VGK+ LL+RL   P  G Y PT++IQ  S+EW YKT   V+KVD+WDV
Sbjct:   34 LRMKFKRGVNYNMKILLRGDRNVGKSCLLRRLQGGPFIGQYIPTEEIQVASVEWSYKTRDDVIKVDIWDV 103
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BLAST of mRNA_M-pyrifera_M_contig80137.18782.1 vs. uniprot
Match: A0A0V1NTK7_9BILA (Rab-like protein 6 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1NTK7_9BILA)

HSP 1 Score: 87.4 bits (215), Expect = 1.720e-18
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    4 LRKRFKEGIEYNMKVVVRGARGVGKTSLLQRLSVQPVSGAYEPTDQIQTRSIEWDYKTESVVVKVDVWDV 213
            LR +FK G+ YNMK+++RG R VGK+ LL+RL   P  G Y PT++IQ  S+EW YKT   V+KVD+WDV
Sbjct:   34 LRMKFKRGVNYNMKILLRGDRNVGKSCLLRRLQGGPFIGQYIPTEEIQVASVEWSYKTRDDVIKVDIWDV 103
[Close]
BLAST of mRNA_M-pyrifera_M_contig80137.18782.1 vs. uniprot
Match: A0A0V1HF64_9BILA (Rab-like protein 6 (Fragment) n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HF64_9BILA)

HSP 1 Score: 87.4 bits (215), Expect = 1.730e-18
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    4 LRKRFKEGIEYNMKVVVRGARGVGKTSLLQRLSVQPVSGAYEPTDQIQTRSIEWDYKTESVVVKVDVWDV 213
            LR +FK G+ YNMK+++RG R VGK+ LL+RL   P  G Y PT++IQ  S+EW YKT   V+KVD+WDV
Sbjct:   41 LRMKFKRGVNYNMKILLRGDRNVGKSCLLRRLQGGPFIGQYIPTEEIQVASVEWSYKTRDDVIKVDIWDV 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig80137.18782.1 vs. uniprot
Match: A0A3P6T6N6_LITSI (Uncharacterized protein n=1 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6T6N6_LITSI)

HSP 1 Score: 83.6 bits (205), Expect = 3.010e-18
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 ELRKRFKEGIEYNMKVVVRGARGVGKTSLLQRLSVQPVSGAYEPTDQIQTRSIEWDYKTESVVVKVDVWDV 213
            EL+K++ +G++YNMK+V+RG R VGKT L +RL   P    Y PT++IQ  SI+W+Y+    VVKVDVWDV
Sbjct:   25 ELQKKYAKGVQYNMKIVIRGDRSVGKTCLWRRLQGLPFLDDYSPTNEIQVASIQWNYRATDDVVKVDVWDV 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig80137.18782.1 vs. uniprot
Match: A0A183FDY0_HELPZ (Uncharacterized protein n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183FDY0_HELPZ)

HSP 1 Score: 85.1 bits (209), Expect = 3.030e-18
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    4 LRKRFKEGIEYNMKVVVRGARGVGKTSLLQRLSVQPVSGAYEPTDQIQTRSIEWDYKTESVVVKVDVWDV 213
            L+KRF  GI+YNMKVV+RG R VGK+ LL+RL   P    Y PT++IQ  +++W+YK    VVKVDVWDV
Sbjct:   33 LQKRFARGIQYNMKVVIRGDRSVGKSCLLRRLQGLPFMEEYTPTEEIQVANVQWNYKATDDVVKVDVWDV 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80137.18782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D8XYY9_DICVI3.160e-2157.75Uncharacterized protein n=1 Tax=Dictyocaulus vivip... [more]
A0A1I8CH07_9BILA1.200e-2060.56Uncharacterized protein n=1 Tax=Rhabditophanes sp.... [more]
J9F1V1_WUCBA8.130e-1953.52Uncharacterized protein n=1 Tax=Wuchereria bancrof... [more]
E5S4U6_TRISP1.180e-1855.71Rab-like protein 6 n=2 Tax=Trichinella TaxID=6333 ... [more]
A0A0V1IBV0_TRIPS1.420e-1855.71Rab-like protein 6 n=1 Tax=Trichinella pseudospira... [more]
A0A0V1FH68_TRIPS1.470e-1855.71Rab-like protein 6 n=8 Tax=Trichinella TaxID=6333 ... [more]
A0A0V1NTK7_9BILA1.720e-1855.71Rab-like protein 6 n=3 Tax=Trichinella TaxID=6333 ... [more]
A0A0V1HF64_9BILA1.730e-1855.71Rab-like protein 6 (Fragment) n=1 Tax=Trichinella ... [more]
A0A3P6T6N6_LITSI3.010e-1853.52Uncharacterized protein n=1 Tax=Litomosoides sigmo... [more]
A0A183FDY0_HELPZ3.030e-1857.14Uncharacterized protein n=1 Tax=Heligmosomoides po... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80137contigM-pyrifera_M_contig80137:2..315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score88.2
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog6334.EFV60189
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ras of Complex, Roc, domain of DAPkinase
EggNOG OGs38DQY@33154,3BAAY@33208,3CR5S@33213,40D0Q@6231,KOG0084@1,KOG0084@2759
COG Functional cat.U
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.7021399-CDS-M-pyrifera_M_contig80137:1..1741622816706.7021399-CDS-M-pyrifera_M_contig80137:1..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80137 2..174 -
1692278131.7541928-CDS-M-pyrifera_M_contig80137:1..1741692278131.7541928-CDS-M-pyrifera_M_contig80137:1..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80137 2..174 -
1622816706.7161934-CDS-M-pyrifera_M_contig80137:275..3151622816706.7161934-CDS-M-pyrifera_M_contig80137:275..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80137 276..315 -
1692278131.7647424-CDS-M-pyrifera_M_contig80137:275..3151692278131.7647424-CDS-M-pyrifera_M_contig80137:275..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80137 276..315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80137.18782.1prot_M-pyrifera_M_contig80137.18782.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80137 2..315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80137.18782.1

>prot_M-pyrifera_M_contig80137.18782.1 ID=prot_M-pyrifera_M_contig80137.18782.1|Name=mRNA_M-pyrifera_M_contig80137.18782.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
ELRKRFKEGIEYNMKVVVRGARGVGKTSLLQRLSVQPVSGAYEPTDQIQT
RSIEWDYKTESVVVKVDVWDV
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mRNA from alignment at M-pyrifera_M_contig80137:2..315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80137.18782.1 ID=mRNA_M-pyrifera_M_contig80137.18782.1|Name=mRNA_M-pyrifera_M_contig80137.18782.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=314bp|location=Sequence derived from alignment at M-pyrifera_M_contig80137:2..315- (Macrocystis pyrifera P11B4 male)
GAATTACGCAAGCGGTTCAAGGAAGGGATCGAGTACAACAGTAATCCTCC
ATTCCCCATCCCCTCTCCATTCTCCCTCACTTTCATCCCTCGTAATCCGT
TGGATACAACTTGAGACATGGGTTTTGTTTCGGTTCTGCAGTGAAAGTAG
TGGTACGGGGCGCAAGGGGTGTAGGAAAGACGAGTTTGCTACAGCGCCTA
TCTGTGCAGCCTGTTTCTGGCGCATACGAGCCAACTGATCAAATCCAGAC
ACGCTCAATCGAGTGGGACTACAAGACAGAATCGGTTGTGGTGAAGGTGG
ATGTGTGGGATGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80137:2..315-

>mRNA_M-pyrifera_M_contig80137.18782.1 ID=mRNA_M-pyrifera_M_contig80137.18782.1|Name=mRNA_M-pyrifera_M_contig80137.18782.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig80137:2..315- (Macrocystis pyrifera P11B4 male)
GAATTACGCAAGCGGTTCAAGGAAGGGATCGAGTACAACAGAATTACGCA
AGCGGTTCAAGGAAGGGATCGAGTACAACATGAAAGTAGTGGTACGGGGC
GCAAGGGGTGTAGGAAAGACGAGTTTGCTACAGCGCCTATCTGTGCAGCC
TGTTTCTGGCGCATACGAGCCAACTGATCAAATCCAGACACGCTCAATCG
AGTGGGACTACAAGACAGAATCGGTTGTGGTGAAGGTGGATGTGTGGGAT
GTTTGAAAGTAGTGGTACGGGGCGCAAGGGGTGTAGGAAAGACGAGTTTG
CTACAGCGCCTATCTGTGCAGCCTGTTTCTGGCGCATACGAGCCAACTGA
TCAAATCCAGACACGCTCAATCGAGTGGGACTACAAGACAGAATCGGTTG
TGGTGAAGGTGGATGTGTGGGATGTT
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