mRNA_M-pyrifera_M_contig80007.18763.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80007.18763.1
Unique NamemRNA_M-pyrifera_M_contig80007.18763.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80007.18763.1 vs. uniprot
Match: D7FU67_ECTSI (Glucose-6-phosphate isomerase, cytosolic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU67_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.060e-19
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 QVHETLDKVRTFSEQVRSGKLRGATGKLLTNIVAVGIGGSYLGPEFVHEV 150
            QVH+TLDKV+ FSE+VRSG+LRGATGK L NIVAVGIGGSYLGPEFVHEV
Sbjct:  258 QVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHEV 307
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BLAST of mRNA_M-pyrifera_M_contig80007.18763.1 vs. uniprot
Match: A0A836C893_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C893_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.640e-16
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QVHETLDKVRTFSEQVRSGKLRGATGKLLTNIVAVGIGGSYLGPEFVHE 147
            +VH  L+KV+ FSE VRSG+ RGATGKLL NIVAVGIGGSYLGPEFVHE
Sbjct:  133 EVHAVLNKVKAFSEAVRSGEQRGATGKLLRNIVAVGIGGSYLGPEFVHE 181
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BLAST of mRNA_M-pyrifera_M_contig80007.18763.1 vs. uniprot
Match: A0A836CFZ0_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.610e-16
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    4 VHETLDKVRTFSEQVRSGKLRGATGKLLTNIVAVGIGGSYLGPEFVHE 147
            VHE L KV+ FSE VRSG+ RGATG+LL NIVAVGIGGSYLGPEFVHE
Sbjct:  134 VHEVLRKVKAFSEAVRSGEQRGATGRLLRNIVAVGIGGSYLGPEFVHE 181
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BLAST of mRNA_M-pyrifera_M_contig80007.18763.1 vs. uniprot
Match: A0A7V9JRK5_9BACT (Glucose-6-phosphate isomerase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V9JRK5_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 1.050e-15
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QVHETLDKVRTFSEQVRSGKLRGATGKLLTNIVAVGIGGSYLGPEFVHE 147
            QVHE L +++TFSEQVRSG+ +G TGK LT++VA+GIGGSYLGPEFV E
Sbjct:  121 QVHEVLGRIKTFSEQVRSGRWKGVTGKPLTDVVAIGIGGSYLGPEFVFE 169
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BLAST of mRNA_M-pyrifera_M_contig80007.18763.1 vs. uniprot
Match: A0A518HAL9_9BACT (Glucose-6-phosphate isomerase n=1 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518HAL9_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 2.340e-15
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QVHETLDKVRTFSEQVRSGKLRGATGKLLTNIVAVGIGGSYLGPEFVHE 147
            +VHE LDK+R FSE+VRSG   GATG+ LT++V++GIGGSYLGPEFVHE
Sbjct:  114 EVHEVLDKIRAFSEKVRSGAWTGATGRPLTDVVSIGIGGSYLGPEFVHE 162
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BLAST of mRNA_M-pyrifera_M_contig80007.18763.1 vs. uniprot
Match: A0A7S3KVV6_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KVV6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.350e-15
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QVHETLDKVRTFSEQVRSGKLRGATGKLLTNIVAVGIGGSYLGPEFVHE 147
            +VHE LD+++ F+E VRSGKLRG TGK L NIV+VGIGGSYLGPEF+HE
Sbjct:  423 EVHEVLDQIKEFTEGVRSGKLRGYTGKRLRNIVSVGIGGSYLGPEFLHE 471
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BLAST of mRNA_M-pyrifera_M_contig80007.18763.1 vs. uniprot
Match: A0A432MPB7_9BACT (Glucose-6-phosphate isomerase n=1 Tax=Tautonia sociabilis TaxID=2080755 RepID=A0A432MPB7_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 4.370e-15
Identity = 34/49 (69.39%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QVHETLDKVRTFSEQVRSGKLRGATGKLLTNIVAVGIGGSYLGPEFVHE 147
            +VH+ LDK+R FSE+VRSG   GATG+ LT++V++GIGGSYLGPEFVHE
Sbjct:  114 EVHDVLDKIRAFSEKVRSGSWTGATGRPLTDVVSIGIGGSYLGPEFVHE 162
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BLAST of mRNA_M-pyrifera_M_contig80007.18763.1 vs. uniprot
Match: A0A7S1Z1V3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z1V3_TRICV)

HSP 1 Score: 76.3 bits (186), Expect = 5.100e-15
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QVHETLDKVRTFSEQVRSGKLRGATGKLLTNIVAVGIGGSYLGPEFVHE 147
            +VHE LD+VRTF++ VR+G +RG TGK L NIV+VGIGGSYLGPEF+HE
Sbjct:  267 EVHEVLDQVRTFTDAVRNGAIRGYTGKRLRNIVSVGIGGSYLGPEFLHE 315
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BLAST of mRNA_M-pyrifera_M_contig80007.18763.1 vs. uniprot
Match: UPI0012609E46 (glucose-6-phosphate isomerase n=2 Tax=Tautonia TaxID=2680020 RepID=UPI0012609E46)

HSP 1 Score: 76.3 bits (186), Expect = 5.970e-15
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 QVHETLDKVRTFSEQVRSGKLRGATGKLLTNIVAVGIGGSYLGPEFVHE 147
            QVH  L+K+R FS++VRSG+ +GATGK LT++V++GIGGSYLGPEFVHE
Sbjct:  114 QVHSVLEKIRGFSDRVRSGEWKGATGKPLTDVVSIGIGGSYLGPEFVHE 162
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BLAST of mRNA_M-pyrifera_M_contig80007.18763.1 vs. uniprot
Match: A0A7S2YCA4_9STRA (Glucose-6-phosphate isomerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCA4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.130e-15
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QVHETLDKVRTFSEQVRSGKLRGATGKLLTNIVAVGIGGSYLGPEFVHE 147
            +VHE LD+++ F+E VRSG+LRG TGK L NIV+VGIGGSYLGPEF+HE
Sbjct:  340 EVHEVLDQIKEFTEGVRSGELRGYTGKRLRNIVSVGIGGSYLGPEFLHE 388
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80007.18763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU67_ECTSI1.060e-1986.00Glucose-6-phosphate isomerase, cytosolic n=1 Tax=E... [more]
A0A836C893_9STRA2.640e-1679.59Glucose-6-phosphate isomerase n=1 Tax=Tribonema mi... [more]
A0A836CFZ0_9STRA3.610e-1681.25Glucose-6-phosphate isomerase n=1 Tax=Tribonema mi... [more]
A0A7V9JRK5_9BACT1.050e-1571.43Glucose-6-phosphate isomerase (Fragment) n=1 Tax=P... [more]
A0A518HAL9_9BACT2.340e-1571.43Glucose-6-phosphate isomerase n=1 Tax=Tautonia pla... [more]
A0A7S3KVV6_9STRA2.350e-1573.47Glucose-6-phosphate isomerase n=1 Tax=Amphora coff... [more]
A0A432MPB7_9BACT4.370e-1569.39Glucose-6-phosphate isomerase n=1 Tax=Tautonia soc... [more]
A0A7S1Z1V3_TRICV5.100e-1571.43Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
UPI0012609E465.970e-1569.39glucose-6-phosphate isomerase n=2 Tax=Tautonia Tax... [more]
A0A7S2YCA4_9STRA8.130e-1571.43Glucose-6-phosphate isomerase (Fragment) n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80007contigM-pyrifera_M_contig80007:214..363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue4.1e-16
Seed eggNOG ortholog2880.D7FU67
KEGG rclassRC00376,RC00563
KEGG koko:K01810
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00004,M00114
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.glucose-6-phosphate isomerase activity
EggNOG OGsCOG0166@1,KOG2446@2759
EC5.3.1.9
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816705.693106-CDS-M-pyrifera_M_contig80007:213..3631622816705.693106-CDS-M-pyrifera_M_contig80007:213..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80007 214..363 +
1692278131.1355498-CDS-M-pyrifera_M_contig80007:213..3631692278131.1355498-CDS-M-pyrifera_M_contig80007:213..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80007 214..363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80007.18763.1prot_M-pyrifera_M_contig80007.18763.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80007 214..363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80007.18763.1

>prot_M-pyrifera_M_contig80007.18763.1 ID=prot_M-pyrifera_M_contig80007.18763.1|Name=mRNA_M-pyrifera_M_contig80007.18763.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
QVHETLDKVRTFSEQVRSGKLRGATGKLLTNIVAVGIGGSYLGPEFVHEV
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mRNA from alignment at M-pyrifera_M_contig80007:214..363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80007.18763.1 ID=mRNA_M-pyrifera_M_contig80007.18763.1|Name=mRNA_M-pyrifera_M_contig80007.18763.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig80007:214..363+ (Macrocystis pyrifera P11B4 male)
CAGGTGCACGAGACATTGGATAAGGTGAGGACCTTCTCCGAGCAGGTGAG
GTCTGGAAAGCTCCGAGGCGCGACCGGCAAGCTGCTGACCAACATCGTCG
CGGTAGGCATCGGCGGGAGCTATCTGGGCCCGGAATTCGTTCACGAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80007:214..363+

>mRNA_M-pyrifera_M_contig80007.18763.1 ID=mRNA_M-pyrifera_M_contig80007.18763.1|Name=mRNA_M-pyrifera_M_contig80007.18763.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig80007:214..363+ (Macrocystis pyrifera P11B4 male)
CAGGTGCACGAGACATTGGATAAGGTGAGGACCTTCTCCGAGCAGGTGAG
GTCTGGAAAGCTCCGAGGCGCGACCGGCAAGCTGCTGACCAACATCGTCG
CGGTAGGCATCGGCGGGAGCTATCTGGGCCCGGAATTCGTTCACGAGGTG
CAGGTGCACGAGACATTGGATAAGGTGAGGACCTTCTCCGAGCAGGTGAG
GTCTGGAAAGCTCCGAGGCGCGACCGGCAAGCTGCTGACCAACATCGTCG
CGGTAGGCATCGGCGGGAGCTATCTGGGCCCGGAATTCGTTCACGAGGTG
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