mRNA_M-pyrifera_M_contig79739.18710.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79739.18710.1
Unique NamemRNA_M-pyrifera_M_contig79739.18710.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79739.18710.1 vs. uniprot
Match: A0A6H5KNJ1_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ1_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 3.950e-68
Identity = 109/162 (67.28%), Postives = 134/162 (82.72%), Query Frame = 1 
Query:    7 RSKKYRAVFRVGMKTVAPKLVVGDHVSVLDTPGLPDPYPRSSNVYYDETVTKLRGVGYANAVLIVLNQERVTPTLIKNYGILYRAFNRLPCAKMFVLRRDSSFMAQSMADQAILEAESRKAVDSILEATNLRRWNTQQFFMWTNGSGEEQDKQVEYIRDQVR 492
            R K+YRA F VG KTV PKLVVG+ +SVLDTPGLPDP PR+S+ YY++TVTKLR VGYANA+L V+ QERVTPTLIKNYG+LYRA NRL C KMFVLRR++S++  + ADQ   E+ESR  V+ IL+ATNL+ ++  QFFM TNGSGEEQDKQV+ +R+QV+
Sbjct:  202 REKEYRATFGVGSKTVEPKLVVGEELSVLDTPGLPDPLPRNSDTYYNDTVTKLRSVGYANAILFVVTQERVTPTLIKNYGLLYRALNRLDCVKMFVLRRETSYLLLNKADQEAHESESRSTVNQILDATNLKNFSKMQFFMLTNGSGEEQDKQVKNMREQVK 363
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BLAST of mRNA_M-pyrifera_M_contig79739.18710.1 vs. uniprot
Match: D7FTA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA3_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 6.160e-56
Identity = 94/163 (57.67%), Postives = 120/163 (73.62%), Query Frame = 1 
Query:    7 RSKKYRAVFRVGMKTVAPKLVVGDHVSVLDTPGLPDPYPRSSNVYYDETVTKLRGVGYANAVLIVLNQERVTPTLIKNYGILYRAFNRLPCAKMFVLRRDSSFMAQSMADQAILEAESRKAVDSILEATNLRRWNTQQFFMWTNGSGEEQDKQVEYIRDQVRK 495
            R K+YRA F VG KTV PK                   PR+S+ YY++TVTKLR VGYANA+L V+ QERVTPTLIKNYG+LYRA NRL C KMFVLRR++S++  + +DQ   E+ESR+ V+ IL+ATNL+ ++  QFFM TNGSGEEQDKQV+Y+R+QV++
Sbjct:    5 REKEYRATFGVGSKTVEPK-------------------PRNSDTYYNDTVTKLRSVGYANAILFVVTQERVTPTLIKNYGLLYRALNRLDCVKMFVLRRETSYLLLNKSDQEAHESESRRTVNQILDATNLKNFSKMQFFMLTNGSGEEQDKQVKYMREQVKR 148
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BLAST of mRNA_M-pyrifera_M_contig79739.18710.1 vs. uniprot
Match: A0A6H5JSX4_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.160e-9
Identity = 38/131 (29.01%), Postives = 69/131 (52.67%), Query Frame = 1 
Query:   88 VLDTPGLPDPYPRSSNVYYDETVTKLRGVGYANAVLIVLNQERVTPTLIKNYGILYRAFNRLPCAKMFVLRRDSSFMAQSMADQAILEAESRKAVDSILEATNLRRWNTQQFFMWTNGSGEEQDKQVEYIR 480
            V+DTPG P   P++++  +D  V  LR  G  + ++ ++ QE V+PT  ++Y +L R  N LPC+K+ V R+ +        ++    + ++  V+ +L+ + L         +  +G G E  KQV+ IR
Sbjct:   85 VIDTPGFPGHDPKTTSKNFDALVKALRREGSLSTLIFLVQQEEVSPTEFRDYAVLLRQLNHLPCSKLIVCRQAALSRRHKRTEEERRHSGAQ-FVEGVLDDSGLNM----PLVLLNDGYGSESIKQVDEIR 210
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79739.18710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KNJ1_9PHAE3.950e-6867.28G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D7FTA3_ECTSI6.160e-5657.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSX4_9PHAE3.160e-929.01G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79739contigM-pyrifera_M_contig79739:337..831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size495
Cds size495
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.9036417-CDS-M-pyrifera_M_contig79739:336..8311622816700.9036417-CDS-M-pyrifera_M_contig79739:336..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79739 337..831 +
1692278127.8140314-CDS-M-pyrifera_M_contig79739:336..8311692278127.8140314-CDS-M-pyrifera_M_contig79739:336..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79739 337..831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79739.18710.1prot_M-pyrifera_M_contig79739.18710.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79739 337..831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79739.18710.1

>prot_M-pyrifera_M_contig79739.18710.1 ID=prot_M-pyrifera_M_contig79739.18710.1|Name=mRNA_M-pyrifera_M_contig79739.18710.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
MGRSKKYRAVFRVGMKTVAPKLVVGDHVSVLDTPGLPDPYPRSSNVYYDE
TVTKLRGVGYANAVLIVLNQERVTPTLIKNYGILYRAFNRLPCAKMFVLR
RDSSFMAQSMADQAILEAESRKAVDSILEATNLRRWNTQQFFMWTNGSGE
EQDKQVEYIRDQVRK
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mRNA from alignment at M-pyrifera_M_contig79739:337..831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79739.18710.1 ID=mRNA_M-pyrifera_M_contig79739.18710.1|Name=mRNA_M-pyrifera_M_contig79739.18710.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig79739:337..831+ (Macrocystis pyrifera P11B4 male)
ATGGGCAGGTCCAAGAAGTACCGCGCTGTATTCCGGGTGGGGATGAAGAC
GGTAGCGCCCAAGCTCGTGGTGGGGGACCACGTGTCTGTACTGGACACCC
CGGGGCTGCCGGACCCGTATCCCCGGAGCTCGAACGTCTACTACGATGAG
ACCGTAACGAAGCTCAGGGGGGTGGGGTACGCAAACGCGGTGCTGATCGT
GCTGAACCAGGAGCGGGTGACCCCGACGCTCATCAAGAACTACGGCATTC
TGTACCGGGCTTTCAATCGGCTCCCTTGCGCGAAGATGTTCGTACTGCGG
AGGGACTCGTCGTTCATGGCGCAGAGCATGGCGGACCAGGCGATACTCGA
GGCGGAGTCGCGGAAGGCGGTGGACAGTATTCTGGAGGCCACCAACCTGA
GGAGGTGGAATACGCAGCAGTTTTTCATGTGGACTAACGGGTCGGGAGAG
GAGCAGGACAAGCAGGTCGAGTACATAAGGGATCAGGTGAGGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79739:337..831+

>mRNA_M-pyrifera_M_contig79739.18710.1 ID=mRNA_M-pyrifera_M_contig79739.18710.1|Name=mRNA_M-pyrifera_M_contig79739.18710.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig79739:337..831+ (Macrocystis pyrifera P11B4 male)
ATGGGCAGGTCCAAGAAGTACCGCGCTGTATTCCGGGTGGGGATGAAGAC
GGTAGCGCCCAAGCTCGTGGTGGGGGACCACGTGTCTGTACTGGACACCC
CGGGGCTGCCGGACCCGTATCCCCGGAGCTCGAACGTCTACTACGATGAG
ACCGTAACGAAGCTCAGGGGGGTGGGGTACGCAAACGCGGTGCTGATCGT
GCTGAACCAGGAGCGGGTGACCCCGACGCTCATCAAGAACTACGGCATTC
TGTACCGGGCTTTCAATCGGCTCCCTTGCGCGAAGATGTTCGTACTGCGG
AGGGACTCGTCGTTCATGGCGCAGAGCATGGCGGACCAGGCGATACTCGA
GGCGGAGTCGCGGAAGGCGGTGGACAGTATTCTGGAGGCCACCAACCTGA
GGAGGTGGAATACGCAGCAGTTTTTCATGTGGACTAACGGGTCGGGAGAG
GAGCAGGACAAGCAGGTCGAGTACATAAGGGATCAGGTGAGGAAGATGGG
CAGGTCCAAGAAGTACCGCGCTGTATTCCGGGTGGGGATGAAGACGGTAG
CGCCCAAGCTCGTGGTGGGGGACCACGTGTCTGTACTGGACACCCCGGGG
CTGCCGGACCCGTATCCCCGGAGCTCGAACGTCTACTACGATGAGACCGT
AACGAAGCTCAGGGGGGTGGGGTACGCAAACGCGGTGCTGATCGTGCTGA
ACCAGGAGCGGGTGACCCCGACGCTCATCAAGAACTACGGCATTCTGTAC
CGGGCTTTCAATCGGCTCCCTTGCGCGAAGATGTTCGTACTGCGGAGGGA
CTCGTCGTTCATGGCGCAGAGCATGGCGGACCAGGCGATACTCGAGGCGG
AGTCGCGGAAGGCGGTGGACAGTATTCTGGAGGCCACCAACCTGAGGAGG
TGGAATACGCAGCAGTTTTTCATGTGGACTAACGGGTCGGGAGAGGAGCA
GGACAAGCAGGTCGAGTACATAAGGGATCAGGTGAGGAAG
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