mRNA_M-pyrifera_M_contig79562.18676.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79562.18676.1
Unique NamemRNA_M-pyrifera_M_contig79562.18676.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79562.18676.1 vs. uniprot
Match: A0A5A8E6Z6_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E6Z6_CAFRO)

HSP 1 Score: 137 bits (346), Expect = 1.160e-38
Identity = 64/128 (50.00%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    1 QFESDCMLVFRNCMVYNQDGSDYYLLAENRMKAFQERFASVKAGAADKTGAGAKPPTLQDKRGFTQNVYAITAEELGKLVQLLDTRCGSAIRKVDSDDIEVDVDAIDSQTFWIADEFVKSCVAAGAKK 384
            +FE D  L++ NCM YN DGS+Y+ +A+   K FQ++F+ + A A  +T    + PTL +K+ F+ N+Y ITA+ELGK+VQ+LD RC S IRK+DSDDIE+D+DAI ++TFW  D FV + +AA   K
Sbjct:   61 EFEKDVALIWDNCMTYNADGSEYFEIAKRLKKLFQQKFSKIAASAGIRTDEH-RAPTLAEKKTFSHNIYHITADELGKVVQILDQRCDSCIRKIDSDDIEIDIDAISAETFWEVDAFVSNVIAASKSK 187          
BLAST of mRNA_M-pyrifera_M_contig79562.18676.1 vs. uniprot
Match: A0A1W0A9V6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9V6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.140e-27
Identity = 49/125 (39.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    4 FESDCMLVFRNCMVYNQDGSDYYLLAENRMKAFQERFASVKAGAADKTGAGAKPPTLQDKRGFTQNVYAITAEELGKLVQLLDTRCGSAIRKVDSDDIEVDVDAIDSQTFWIADEFVKSCVAAGA 378
            F  D  L++ NC +YNQDGSD Y +A +  K F E+   +K      T + ++ P+L+D+  F+Q++Y I++++LG +V++LD RC  A+ K +SD++++++DAID++TF   D FVK C+  G+
Sbjct:   67 FAKDMRLIWDNCKLYNQDGSDLYAIAHSLSKLFDEKMKHLKLDDGPPTKSSSRDPSLEDRIVFSQDIYKISSKDLGTVVEMLDERCPKALDKQNSDELDLNIDAIDAKTFKELDTFVKECIPGGS 191          
BLAST of mRNA_M-pyrifera_M_contig79562.18676.1 vs. uniprot
Match: A0A7S1XM82_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM82_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.100e-26
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:   13 DCMLVFRNCMVYNQDGSDYYLLAENRMKAFQERFASVKAGAADKTGAGAKPPTLQDKRGFTQNVYAITAEELGKLVQLLDTRCGSAI-RKVDSDDIEVDVDAIDSQTFWIADEFVKSCVAAGAKK 384
            D  LV+RNCM YNQDGSD+Y +AE   K F+ +FA V    A ++    +PPT  ++  F+ N++ I  +ELG+L+Q LD  C   + +K D D+IE++VDAID+ TF   D FVK C+   + K
Sbjct:   73 DIRLVWRNCMTYNQDGSDFYKIAERFSKKFETKFAPVAKAEARESVEDERPPTTDERIVFSHNLFNIRMQELGQLIQKLDGLCPECLEKKPDEDEIEINVDAIDAATFRNVDRFVKDCLPDASGK 197          
BLAST of mRNA_M-pyrifera_M_contig79562.18676.1 vs. uniprot
Match: A0A6G0WNJ5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNJ5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.380e-26
Identity = 47/126 (37.30%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    1 QFESDCMLVFRNCMVYNQDGSDYYLLAENRMKAFQERFASVKAGAADKTGAGAKPPTLQDKRGFTQNVYAITAEELGKLVQLLDTRCGSAIRKVDSDDIEVDVDAIDSQTFWIADEFVKSCVAAGA 378
            +F  D  L++ NC +YNQDGSD + +A +  K F ER   +K      T + +  P+L+++  F+Q++Y I++++LG ++++L+ RC  A+ + ++D++E++VDAID++TF   D F+K CV  GA
Sbjct:   66 EFAKDMRLIWDNCKLYNQDGSDLWAVAHDLSKMFDERMKELKLDDGPSTKSSSSEPSLEERIVFSQDIYKISSKDLGTVIEMLEERCPKALDRQNADELELNVDAIDTKTFKEVDAFIKDCVPGGA 191          
BLAST of mRNA_M-pyrifera_M_contig79562.18676.1 vs. uniprot
Match: A0A7S3JU45_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JU45_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.010e-24
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:   13 DCMLVFRNCMVYNQDGSDYYLLAENRMKAFQERFASVKAGAADKTGAGAKPPTLQDKRGFTQNVYAITAEELGKLVQLLDTRCGSAIRKVDSDD-IEVDVDAIDSQTFWIADEFVKSCVAAGAKK 384
            D  LV+ NC  YNQDGSD++ LAE+  K F+++FA VKA            P+L++K  F+  +Y I  EELG+LV+ L+ RC  AI K  +DD +E+++DAID +TF   D+FVK+C+     K
Sbjct:   65 DIRLVWSNCKKYNQDGSDFFNLAESLSKRFEDQFAKVKAEDPMIEDDTEHAPSLEEKTKFSHMIYKIKQEELGQLVEKLEDRCPEAIDKTPNDDELEINIDAIDPKTFRELDKFVKACIVNNQPK 189          
BLAST of mRNA_M-pyrifera_M_contig79562.18676.1 vs. uniprot
Match: A0A8J2WSU6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSU6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.520e-24
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   13 DCMLVFRNCMVYNQDGSDYYLLAENRMKAFQERFASVKAG--AADKTGAGAKPPTLQDKRGFTQNVYAITAEELGKLVQLLDTRCGSAIRKVDSDD-IEVDVDAIDSQTFWIADEFVKSCVAAGAKK 384
            D  L++ NC  YNQDGSD+Y LA+   K F+ERF+ VKA   A D+       P L++K  F+ N+Y I  EELG LV+ LD +C  AI K  SDD IE+++D ID +TF   D +V+ C++    K
Sbjct:   71 DIRLIWNNCKKYNQDGSDFYNLADGFSKRFEERFSKVKAENPALDEEEL-THAPDLEEKTRFSHNIYRIKQEELGVLVEKLDAKCPDAIDKSTSDDEIEINIDQIDPRTFHDLDRYVRQCLSQSNPK 196          
BLAST of mRNA_M-pyrifera_M_contig79562.18676.1 vs. uniprot
Match: W4GDM1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GDM1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 8.720e-24
Identity = 50/126 (39.68%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    4 FESDCMLVFRNCMVYNQDGSDYYLLAENRMKAFQERFASVKAGAADKTG-AGAKPPTLQDKRGFTQNVYAITAEELGKLVQLLDTRCGSAIRKVDSDDIEVDVDAIDSQTFWIADEFVKSCVAAGA 378
            F  D  L++ NC +YNQDGSD + +A++  K F E+   +K  A D +  A +  PTL+++  F+Q++Y I++++LG +V +L+  C  A+ K ++D++E++VDAID++TF   D F+K CV  GA
Sbjct:   67 FGRDMRLIWENCKLYNQDGSDLWTVADDLTKLFDEKMKELKLDAGDPSSKASSSEPTLEERIVFSQDIYKISSKDLGIVVDMLEELCPKALDK-NADELELNVDAIDAKTFKEIDAFIKDCVPGGA 191          
BLAST of mRNA_M-pyrifera_M_contig79562.18676.1 vs. uniprot
Match: A0A7S2UZN8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZN8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 9.400e-24
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   10 SDCMLVFRNCMVYNQDGSDYYLLAENRMKAFQERFASVKAGAADKTGAGAKPPTLQDKRGFTQNVYAITAEELGKLVQLLDTRCGSAIRKVDSDDIEVDVDAIDSQTF 333
            +D  LV+ NCM+YNQDGSDYY LAE   K F++++A V            K PTL++K  F Q +Y + AE+ G++V  LD RC   + KVD D++E+ VD ID +TF
Sbjct:  104 ADIRLVWENCMIYNQDGSDYYRLAEKLSKKFEDKYAKVSNKEVSSAIDDDKVPTLEEKLLFEQMIYRLRAEQTGEVVLTLDQRCPDCLAKVDGDELEITVDVIDPRTF 211          
BLAST of mRNA_M-pyrifera_M_contig79562.18676.1 vs. uniprot
Match: A0A484E8G4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8G4_BRELC)

HSP 1 Score: 100 bits (249), Expect = 1.240e-23
Identity = 52/129 (40.31%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    4 FESDCMLVFRNCMVYNQDGSDYYLLAENRMKAFQERFASVK--AGAADKTGAGAKPPTLQDKRGFTQNVYAITAEELGKLVQLLDTRCGSAIRKVDSDDIEVDVDAIDSQTFWIADEFVKSCVAAGAKK 384
            F  D  LV+ NC +YNQDGSD YLLAE   K F++R  +VK   G   K       P+L++K  F+QN+Y +  ++LG +VQLL+ +C  ++ K   D++E+ VD ID++TF   ++FV   V  G+++
Sbjct:   83 FARDMRLVWSNCKLYNQDGSDLYLLAEELAKKFEDRVKAVKLDVGPVPKADKSVPAPSLEEKIFFSQNIYKVKPKDLGAIVQLLEEQCPKSLDKSSPDELEIVVDNIDNKTFRDLEKFVLENVPEGSRE 211          
BLAST of mRNA_M-pyrifera_M_contig79562.18676.1 vs. uniprot
Match: A0A7R9VVT0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVT0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.260e-23
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   13 DCMLVFRNCMVYNQDGSDYYLLAENRMKAFQERFASVKAGAADKTGAGAK----PPTLQDKRGFTQNVYAITAEELGKLVQLLDTRCGSAIRKVDSDD-IEVDVDAIDSQTFWIADEFVKSCVAAG 375
            D  L+++NCM YN DGSD+++LA+N  K F+++FA ++     K+ A  K     PTL++KR F + +Y I+ EELGK++  LD +C +A+ K  ++D +E++VD I    F     FVKSC  +G
Sbjct:   72 DVRLIWKNCMQYNADGSDFFILAQNMSKKFEDKFAKLQKDLDSKSAANGKGNSSEPTLEEKRTFAKLLYKISKEELGKVIVDLDAKCSTALTKNSAEDEVEINVDHISPTVFHELMNFVKSCADSG 197          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79562.18676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E6Z6_CAFRO1.160e-3850.00Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A1W0A9V6_9STRA2.140e-2739.20Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S1XM82_9STRA2.100e-2644.00Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A6G0WNJ5_9STRA3.380e-2637.30Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3JU45_9STRA1.010e-2444.00Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A8J2WSU6_9STRA5.520e-2444.88Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
W4GDM1_9STRA8.720e-2439.68Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A7S2UZN8_9STRA9.400e-2445.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A484E8G4_BRELC1.240e-2340.31Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7R9VVT0_9STRA1.260e-2340.48Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79562contigM-pyrifera_M_contig79562:73..456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog112098.XP_008613176.1
KEGG koko:K11724
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03036
Exons1
Model size384
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.1027298-CDS-M-pyrifera_M_contig79562:72..4381622816699.1027298-CDS-M-pyrifera_M_contig79562:72..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79562 73..438 -
1692278126.678511-CDS-M-pyrifera_M_contig79562:72..4381692278126.678511-CDS-M-pyrifera_M_contig79562:72..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79562 73..438 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.113254-UTR-M-pyrifera_M_contig79562:438..4561622816699.113254-UTR-M-pyrifera_M_contig79562:438..456Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79562 439..456 -
1692278126.6922553-UTR-M-pyrifera_M_contig79562:438..4561692278126.6922553-UTR-M-pyrifera_M_contig79562:438..456Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79562 439..456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79562.18676.1prot_M-pyrifera_M_contig79562.18676.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79562 73..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79562.18676.1

>prot_M-pyrifera_M_contig79562.18676.1 ID=prot_M-pyrifera_M_contig79562.18676.1|Name=mRNA_M-pyrifera_M_contig79562.18676.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MLVFRNCMVYNQDGSDYYLLAENRMKAFQERFASVKAGAADKTGAGAKPP
TLQDKRGFTQNVYAITAEELGKLVQLLDTRCGSAIRKVDSDDIEVDVDAI
DSQTFWIADEFVKSCVAAGAKK
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mRNA from alignment at M-pyrifera_M_contig79562:73..456-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79562.18676.1 ID=mRNA_M-pyrifera_M_contig79562.18676.1|Name=mRNA_M-pyrifera_M_contig79562.18676.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig79562:73..456- (Macrocystis pyrifera P11B4 male)
CAGTTTGAGAGCGATTGCATGTTGGTGTTCCGGAACTGCATGGTGTACAA CCAAGACGGTTCCGACTACTACCTTTTGGCGGAGAATCGGATGAAGGCGT TCCAGGAGCGGTTCGCGAGCGTCAAGGCGGGCGCAGCGGACAAGACGGGC GCTGGAGCGAAGCCGCCTACGCTGCAGGACAAGCGTGGATTCACGCAGAA CGTGTACGCGATCACTGCCGAGGAGCTGGGCAAGCTGGTGCAGCTGCTTG ACACGCGCTGCGGGTCAGCCATCCGAAAAGTCGACTCGGACGACATTGAG GTGGACGTGGATGCCATCGACTCACAGACCTTTTGGATCGCTGACGAATT CGTCAAATCTTGCGTCGCTGCTGGAGCCAAGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79562:73..456-

>mRNA_M-pyrifera_M_contig79562.18676.1 ID=mRNA_M-pyrifera_M_contig79562.18676.1|Name=mRNA_M-pyrifera_M_contig79562.18676.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig79562:73..456- (Macrocystis pyrifera P11B4 male)
ATGTTGGTGTTCCGGAACTGCATGGTGTACAACCAAGACGGTTCCGACTA
CTACCTTTTGGCGGAGAATCGGATGAAGGCGTTCCAGGAGCGGTTCGCGA
GCGTCAAGGCGGGCGCAGCGGACAAGACGGGCGCTGGAGCGAAGCCGCCT
ACGCTGCAGGACAAGCGTGGATTCACGCAGAACGTGTACGCGATCACTGC
CGAGGAGCTGGGCAAGCTGGTGCAGCTGCTTGACACGCGCTGCGGGTCAG
CCATCCGAAAAGTCGACTCGGACGACATTGAGGTGGACGTGGATGCCATC
GACTCACAGACCTTTTGGATCGCTGACGAATTCGTCAAATCTTGCGTCGC
TGCTGGAGCCAAGAAGATGTTGGTGTTCCGGAACTGCATGGTGTACAACC
AAGACGGTTCCGACTACTACCTTTTGGCGGAGAATCGGATGAAGGCGTTC
CAGGAGCGGTTCGCGAGCGTCAAGGCGGGCGCAGCGGACAAGACGGGCGC
TGGAGCGAAGCCGCCTACGCTGCAGGACAAGCGTGGATTCACGCAGAACG
TGTACGCGATCACTGCCGAGGAGCTGGGCAAGCTGGTGCAGCTGCTTGAC
ACGCGCTGCGGGTCAGCCATCCGAAAAGTCGACTCGGACGACATTGAGGT
GGACGTGGATGCCATCGACTCACAGACCTTTTGGATCGCTGACGAATTCG
TCAAATCTTGCGTCGCTGCTGGAGCCAAGAAG
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