mRNA_M-pyrifera_M_contig79549.18672.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79549.18672.1
Unique NamemRNA_M-pyrifera_M_contig79549.18672.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79549.18672.1 vs. uniprot
Match: A0A8H7PMH0_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PMH0_MORIS)

HSP 1 Score: 57.0 bits (136), Expect = 2.730e-7
Identity = 30/94 (31.91%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:   19 PLLALHIKEVTATAANWSSHLEGTADVDCLA-AHYFNTVRNVPEPMIEPWDVTALVQRPI-DAGVSLTLEARKVLNVNVTKAFVETVLSALEQW 294
            PL+ +++++ +  A++W+  L    DVD  + A++FN   +  EP++EPW     + +P  D    + + +RK+L +N T  F ET+LS+L  W
Sbjct: 1977 PLVDMNLEQFSIKASDWTKSL--MVDVDFQSYANFFNIKNSHWEPLVEPWKFNMKLSKPSSDEPYGMQISSRKMLEINCTHTFTETMLSSLSTW 2068
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BLAST of mRNA_M-pyrifera_M_contig79549.18672.1 vs. uniprot
Match: A0A8H7Q9B0_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q9B0_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 5.090e-7
Identity = 32/94 (34.04%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:   19 PLLALHIKEVTATAANWSSHLEGTADVDCLA-AHYFNTVRNVPEPMIEPWDVTALVQRPIDAG-VSLTLEARKVLNVNVTKAFVETVLSALEQW 294
            PL+ +++++ +  A++WS  L    DVD  + A++FN   +  EP+IEPW     + R  +    +L + +R++L +N T  F ETVLS L  W
Sbjct: 1843 PLIDMNLEQFSIKASDWSKSL--LVDVDFQSYANFFNVKNSHWEPLIEPWKFNMKLMRRSNLDPYALQISSRRMLEINFTHTFAETVLSTLSTW 1934
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BLAST of mRNA_M-pyrifera_M_contig79549.18672.1 vs. uniprot
Match: F4RNU5_MELLP (Uncharacterized protein n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4RNU5_MELLP)

HSP 1 Score: 55.8 bits (133), Expect = 6.950e-7
Identity = 30/93 (32.26%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:   19 PLLALHIKEVTATAANWSSHLEGTADVDCLAAHYFNTVRNVPEPMIEPWDVTALV-QRPIDAGVSLTLEARKVLNVNVTKAFVETVLSALEQW 294
            PLL L  KE +  A +WS+ L     + CL  + +N   +  EP+++PW V+  + QR     ++++LE++K L +NVT  F++ V+++ + W
Sbjct: 1820 PLLNLSTKEFSVRATDWSNQLCMETAI-CLLINSYNLTNSHWEPLMDPWPVSLKISQRGSPPCMTMSLESKKRLELNVTATFIDLVMTSADVW 1911
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BLAST of mRNA_M-pyrifera_M_contig79549.18672.1 vs. uniprot
Match: A0A1Y1YEI3_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YEI3_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 1.150e-5
Identity = 25/88 (28.41%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   19 PLLALHIKEVTATAANWSSHLEGTADVDCLAAHYFNTVRNVPEPMIEPWDVTALVQRPI-DAGVSLTLEARKVLNVNVTKAFVETVLS 279
            P++ + +++      +WSS L  + D+  LA + FN   +  EP++EPW  +  + RP+  A   +  E+++  ++N+  +F+ET LS
Sbjct: 1766 PIIDIQLQKFVVEVKDWSSQLIVSTDIQMLA-NMFNIKNSHWEPLVEPWQFSIKIDRPLAPATTQMNFESKRQFDLNIAHSFLETTLS 1852
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BLAST of mRNA_M-pyrifera_M_contig79549.18672.1 vs. uniprot
Match: A0A4P9XDH4_9FUNG (Uncharacterized protein n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9XDH4_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 1.570e-5
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   19 PLLALHIKEVTATAANWSSHLEGTADVDCLAAHYFNTVRNVPEPMIEPWDVTALVQR-PIDAGVSLTLEARKVLNVNVTKAFVETVLS 279
            P+L L + ++    A+WSS L     +  +  +YFN   +  EP++EPW     V R P   G S+   +R+ L++N+T A++ETVL+
Sbjct: 1926 PVLDLVMDKLEVEIADWSSKLRVNVSIH-MFVNYFNIRNSHWEPLVEPWQAFINVARQPETGGTSVEFFSRRKLDINITHAWLETVLA 2012
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79549.18672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A8H7PMH0_MORIS2.730e-731.91Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A8H7Q9B0_9FUNG5.090e-734.04Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
F4RNU5_MELLP6.950e-732.26Uncharacterized protein n=1 Tax=Melampsora larici-... [more]
A0A1Y1YEI3_9FUNG1.150e-528.41Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A4P9XDH4_9FUNG1.570e-534.09Uncharacterized protein n=1 Tax=Caulochytrium prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79549contigM-pyrifera_M_contig79549:382..678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.9718158-CDS-M-pyrifera_M_contig79549:381..6781622816698.9718158-CDS-M-pyrifera_M_contig79549:381..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79549 382..678 -
1692278126.6277905-CDS-M-pyrifera_M_contig79549:381..6781692278126.6277905-CDS-M-pyrifera_M_contig79549:381..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79549 382..678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79549.18672.1prot_M-pyrifera_M_contig79549.18672.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79549 382..678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79549.18672.1

>prot_M-pyrifera_M_contig79549.18672.1 ID=prot_M-pyrifera_M_contig79549.18672.1|Name=mRNA_M-pyrifera_M_contig79549.18672.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
AEAANAPLLALHIKEVTATAANWSSHLEGTADVDCLAAHYFNTVRNVPEP
MIEPWDVTALVQRPIDAGVSLTLEARKVLNVNVTKAFVETVLSALEQWQ
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mRNA from alignment at M-pyrifera_M_contig79549:382..678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79549.18672.1 ID=mRNA_M-pyrifera_M_contig79549.18672.1|Name=mRNA_M-pyrifera_M_contig79549.18672.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig79549:382..678- (Macrocystis pyrifera P11B4 male)
GCCGAGGCAGCGAACGCTCCTCTTCTTGCACTTCACATCAAGGAGGTGAC
TGCCACTGCTGCGAATTGGTCCTCCCATCTGGAGGGAACTGCAGACGTCG
ACTGCCTTGCAGCACATTACTTCAACACAGTGCGAAACGTTCCTGAGCCT
ATGATTGAGCCCTGGGACGTCACTGCTCTGGTGCAGAGGCCCATTGACGC
AGGCGTGAGCCTCACATTGGAGGCGAGAAAGGTGCTGAACGTCAACGTGA
CGAAGGCCTTCGTGGAGACGGTGCTCTCTGCGCTCGAGCAATGGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79549:382..678-

>mRNA_M-pyrifera_M_contig79549.18672.1 ID=mRNA_M-pyrifera_M_contig79549.18672.1|Name=mRNA_M-pyrifera_M_contig79549.18672.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig79549:382..678- (Macrocystis pyrifera P11B4 male)
GCCGAGGCAGCGAACGCTCCTCTTCTTGCACTTCACATCAAGGAGGTGAC
TGCCACTGCTGCGAATTGGTCCTCCCATCTGGAGGGAACTGCAGACGTCG
ACTGCCTTGCAGCACATTACTTCAACACAGTGCGAAACGTTCCTGAGCCT
ATGATTGAGCCCTGGGACGTCACTGCTCTGGTGCAGAGGCCCATTGACGC
AGGCGTGAGCCTCACATTGGAGGCGAGAAAGGTGCTGAACGTCAACGTGA
CGAAGGCCTTCGTGGAGACGGTGCTCTCTGCGCTCGAGCAATGGCAGGCC
GAGGCAGCGAACGCTCCTCTTCTTGCACTTCACATCAAGGAGGTGACTGC
CACTGCTGCGAATTGGTCCTCCCATCTGGAGGGAACTGCAGACGTCGACT
GCCTTGCAGCACATTACTTCAACACAGTGCGAAACGTTCCTGAGCCTATG
ATTGAGCCCTGGGACGTCACTGCTCTGGTGCAGAGGCCCATTGACGCAGG
CGTGAGCCTCACATTGGAGGCGAGAAAGGTGCTGAACGTCAACGTGACGA
AGGCCTTCGTGGAGACGGTGCTCTCTGCGCTCGAGCAATGGCAG
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