mRNA_M-pyrifera_M_contig79507.18669.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79507.18669.1
Unique NamemRNA_M-pyrifera_M_contig79507.18669.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79507.18669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79507contigM-pyrifera_M_contig79507:308..826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog55529.EKX45205
KEGG koko:K10450
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.7673132-CDS-M-pyrifera_M_contig79507:307..8261622816698.7673132-CDS-M-pyrifera_M_contig79507:307..826Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79507 308..826 -
1692278126.5017233-CDS-M-pyrifera_M_contig79507:307..8261692278126.5017233-CDS-M-pyrifera_M_contig79507:307..826Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79507 308..826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79507.18669.1prot_M-pyrifera_M_contig79507.18669.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79507 308..826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79507.18669.1

>prot_M-pyrifera_M_contig79507.18669.1 ID=prot_M-pyrifera_M_contig79507.18669.1|Name=mRNA_M-pyrifera_M_contig79507.18669.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
YNVSVYGVGFGATEDGLTDLKVGGQTCTRIIWESDTVVHCEGVSAPWSSE
NVEVTVGEQVSAVNSLVVAFDEPKLTIIQTEVDAAVGGYPVTLVGERFAL
QLEDITAVHFGDIIVPKTDEWEFSDDFTTLTVIAPPGQGRSLPVVVERVD
GLVNDVGGKVPTFSYANPVLQSV
back to top

mRNA from alignment at M-pyrifera_M_contig79507:308..826-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79507.18669.1 ID=mRNA_M-pyrifera_M_contig79507.18669.1|Name=mRNA_M-pyrifera_M_contig79507.18669.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=519bp|location=Sequence derived from alignment at M-pyrifera_M_contig79507:308..826- (Macrocystis pyrifera P11B4 male)
TACAATGTCTCTGTGTATGGAGTTGGATTCGGTGCAACGGAAGATGGGTT
GACGGATTTGAAAGTTGGTGGGCAGACATGCACACGGATCATTTGGGAGA
GTGATACTGTGGTGCATTGTGAAGGTGTGTCTGCTCCTTGGTCCTCAGAA
AATGTGGAAGTGACGGTTGGAGAGCAGGTGTCTGCTGTCAACTCGCTCGT
TGTTGCCTTTGACGAACCAAAGTTGACAATTATCCAAACTGAAGTTGATG
CTGCAGTTGGTGGATATCCTGTGACACTTGTCGGTGAACGGTTTGCGCTG
CAACTCGAGGACATTACAGCGGTACATTTTGGAGATATAATAGTTCCCAA
AACAGACGAATGGGAGTTTTCTGATGACTTTACCACCCTTACAGTCATTG
CACCACCTGGACAAGGTAGGAGTTTACCAGTCGTTGTGGAGCGCGTGGAT
GGTTTGGTGAATGATGTTGGAGGAAAAGTTCCAACCTTTTCCTATGCCAA
CCCTGTTCTTCAATCTGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig79507:308..826-

>mRNA_M-pyrifera_M_contig79507.18669.1 ID=mRNA_M-pyrifera_M_contig79507.18669.1|Name=mRNA_M-pyrifera_M_contig79507.18669.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig79507:308..826- (Macrocystis pyrifera P11B4 male)
TACAATGTCTCTGTGTATGGAGTTGGATTCGGTGCAACGGAAGATGGGTT
GACGGATTTGAAAGTTGGTGGGCAGACATGCACACGGATCATTTGGGAGA
GTGATACTGTGGTGCATTGTGAAGGTGTGTCTGCTCCTTGGTCCTCAGAA
AATGTGGAAGTGACGGTTGGAGAGCAGGTGTCTGCTGTCAACTCGCTCGT
TGTTGCCTTTGACGAACCAAAGTTGACAATTATCCAAACTGAAGTTGATG
CTGCAGTTGGTGGATATCCTGTGACACTTGTCGGTGAACGGTTTGCGCTG
CAACTCGAGGACATTACAGCGGTACATTTTGGAGATATAATAGTTCCCAA
AACAGACGAATGGGAGTTTTCTGATGACTTTACCACCCTTACAGTCATTG
CACCACCTGGACAAGGTAGGAGTTTACCAGTCGTTGTGGAGCGCGTGGAT
GGTTTGGTGAATGATGTTGGAGGAAAAGTTCCAACCTTTTCCTATGCCAA
CCCTGTTCTTCAATCTGTGTACAATGTCTCTGTGTATGGAGTTGGATTCG
GTGCAACGGAAGATGGGTTGACGGATTTGAAAGTTGGTGGGCAGACATGC
ACACGGATCATTTGGGAGAGTGATACTGTGGTGCATTGTGAAGGTGTGTC
TGCTCCTTGGTCCTCAGAAAATGTGGAAGTGACGGTTGGAGAGCAGGTGT
CTGCTGTCAACTCGCTCGTTGTTGCCTTTGACGAACCAAAGTTGACAATT
ATCCAAACTGAAGTTGATGCTGCAGTTGGTGGATATCCTGTGACACTTGT
CGGTGAACGGTTTGCGCTGCAACTCGAGGACATTACAGCGGTACATTTTG
GAGATATAATAGTTCCCAAAACAGACGAATGGGAGTTTTCTGATGACTTT
ACCACCCTTACAGTCATTGCACCACCTGGACAAGGTAGGAGTTTACCAGT
CGTTGTGGAGCGCGTGGATGGTTTGGTGAATGATGTTGGAGGAAAAGTTC
CAACCTTTTCCTATGCCAACCCTGTTCTTCAATCTGTG
back to top